Wall clock time and date at job start Fri Apr 10 2020 22:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86794 * 119.99965 * 2 1 4 4 H 1.48496 * 109.47342 * 270.00118 * 3 2 1 5 5 H 1.48502 * 109.47265 * 30.00316 * 3 2 1 6 6 H 1.48504 * 109.46972 * 150.00004 * 3 2 1 7 7 C 1.39993 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99849 * 198.52727 * 7 2 1 9 9 C 1.41008 * 120.00168 * 18.52380 * 7 2 1 10 10 C 1.41341 * 120.54346 * 21.68999 * 9 7 2 11 11 C 1.36531 * 118.42773 * 179.71963 * 10 9 7 12 12 C 1.40021 * 119.45762 * 0.47936 * 11 10 9 13 13 C 1.47721 * 119.46106 * 179.78663 * 12 11 10 14 14 C 1.39883 * 120.60407 * 6.40479 * 13 12 11 15 15 C 1.38407 * 118.37243 * 180.28786 * 14 13 12 16 16 C 1.38339 * 119.49588 * 359.73290 * 15 14 13 17 17 N 1.31929 * 121.20773 * 359.97438 * 16 15 14 18 18 C 1.32354 * 121.76634 * 0.02562 * 17 16 15 19 19 N 1.38510 * 119.81446 * 180.02562 * 18 17 16 20 20 C 1.47022 * 110.99681 * 295.95967 * 19 18 17 21 21 C 1.53093 * 109.25451 * 182.35123 * 20 19 18 22 22 O 1.43023 * 109.29824 * 303.22180 * 21 20 19 23 23 C 1.43015 * 113.73729 * 58.64565 * 22 21 20 24 24 C 1.47013 * 111.00250 * 59.64213 * 19 18 17 25 25 N 1.33105 * 121.08206 * 359.50713 * 12 11 10 26 26 C 1.31256 * 121.71102 * 0.25673 * 25 12 11 27 27 H 0.96994 * 119.99770 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.78894 * 359.97438 * 10 9 7 29 29 H 1.07992 * 120.27326 * 180.24359 * 11 10 9 30 30 H 1.08003 * 120.81108 * 0.02562 * 14 13 12 31 31 H 1.08002 * 120.25251 * 179.70813 * 15 14 13 32 32 H 1.07999 * 119.39760 * 179.97438 * 16 15 14 33 33 H 1.08999 * 109.47132 * 62.44438 * 20 19 18 34 34 H 1.08998 * 109.54751 * 302.30850 * 20 19 18 35 35 H 1.08995 * 109.51087 * 183.26002 * 21 20 19 36 36 H 1.09005 * 109.50823 * 63.17969 * 21 20 19 37 37 H 1.09003 * 109.50694 * 61.26779 * 23 22 21 38 38 H 1.08997 * 109.50669 * 181.35517 * 23 22 21 39 39 H 1.09000 * 109.50380 * 57.67344 * 24 19 18 40 40 H 1.09001 * 109.54065 * 297.56609 * 24 19 18 41 41 H 1.07993 * 119.79577 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4401 0.7001 7 6 2.0082 -1.2124 -0.0005 8 1 3.0462 -1.2368 0.2967 9 6 1.3579 -2.4018 -0.3890 10 6 0.1963 -2.3557 -1.1929 11 6 -0.3952 -3.5337 -1.5485 12 6 0.1542 -4.7421 -1.1030 13 6 -0.4884 -6.0165 -1.4838 14 6 -1.5547 -6.0338 -2.3890 15 6 -2.1264 -7.2531 -2.7086 16 6 -1.6297 -8.4097 -2.1347 17 7 -0.6191 -8.3728 -1.2874 18 6 -0.0360 -7.2343 -0.9474 19 7 1.0226 -7.2426 -0.0542 20 6 0.5921 -7.7186 1.2685 21 6 1.7758 -7.6562 2.2373 22 8 2.8593 -8.4265 1.7100 23 6 3.3041 -7.9888 0.4231 24 6 2.1361 -8.0556 -0.5644 25 7 1.2492 -4.7616 -0.3464 26 6 1.8561 -3.6561 0.0175 27 1 -0.4849 0.8400 -0.0004 28 1 -0.2115 -1.4111 -1.5216 29 1 -1.2817 -3.5334 -2.1653 30 1 -1.9256 -5.1177 -2.8245 31 1 -2.9544 -7.3012 -3.4005 32 1 -2.0772 -9.3602 -2.3849 33 1 0.2416 -8.7476 1.1880 34 1 -0.2150 -7.0864 1.6387 35 1 1.4771 -8.0623 3.2037 36 1 2.0916 -6.6201 2.3599 37 1 3.6641 -6.9622 0.4922 38 1 4.1110 -8.6350 0.0777 39 1 2.4553 -7.6691 -1.5323 40 1 1.8114 -9.0903 -0.6748 41 1 2.7429 -3.7080 0.6315 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243456585.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:00 Heat of formation + Delta-G solvation = 40.752943 kcal Electronic energy + Delta-G solvation = -25633.467130 eV Core-core repulsion = 22092.541777 eV Total energy + Delta-G solvation = -3540.925353 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.27648 -38.64688 -38.06379 -35.23362 -34.42108 -32.43708 -30.85241 -30.82966 -30.46374 -29.19595 -26.58693 -25.56604 -23.66344 -23.19027 -22.64617 -21.12827 -20.66576 -19.97561 -17.56886 -17.27421 -16.29324 -15.91955 -15.82205 -15.45195 -15.02498 -14.79697 -14.69572 -14.28941 -14.03044 -13.89581 -13.40427 -13.22447 -12.91568 -12.62884 -12.35107 -12.10534 -12.03363 -11.72161 -11.54856 -11.33284 -11.17334 -11.13187 -11.02365 -10.74366 -10.32633 -9.96727 -9.71668 -9.54435 -9.35804 -9.14062 -8.69361 -8.32465 -8.21313 -7.61363 -7.39194 -7.01482 -4.60378 1.32013 1.62906 2.62566 2.89575 2.93485 2.96072 3.18256 3.67688 3.99096 4.12150 4.16617 4.54700 4.88224 5.19635 5.25252 5.33202 5.42589 5.47487 5.49523 5.54942 5.60835 5.65609 5.72165 5.85003 5.92968 6.03230 6.10076 6.16078 6.21197 6.27601 6.36170 6.54817 6.62413 6.72791 6.86157 6.87862 7.00111 7.16945 7.28625 7.43413 7.60433 7.73073 7.83683 7.88763 8.27047 8.39442 8.45484 8.58214 9.66837 9.78601 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.015002 B = 0.004422 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.970212 B = 6330.958925 C = 7793.823162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.071 3.929 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.426 4.426 8 H 0.088 0.912 9 C 0.070 3.930 10 C -0.153 4.153 11 C -0.119 4.119 12 C -0.014 4.014 13 C 0.009 3.991 14 C -0.101 4.101 15 C -0.166 4.166 16 C 0.067 3.933 17 N -0.510 5.510 18 C 0.279 3.721 19 N -0.434 5.434 20 C 0.033 3.967 21 C 0.068 3.932 22 O -0.391 6.391 23 C 0.068 3.932 24 C 0.034 3.966 25 N -0.389 5.389 26 C -0.024 4.024 27 H 0.287 0.713 28 H 0.127 0.873 29 H 0.096 0.904 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.143 0.857 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.758 -7.590 -1.729 7.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.150 4.150 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.455 4.455 8 H 0.106 0.894 9 C 0.065 3.935 10 C -0.177 4.177 11 C -0.140 4.140 12 C -0.148 4.148 13 C 0.004 3.996 14 C -0.128 4.128 15 C -0.186 4.186 16 C -0.092 4.092 17 N -0.222 5.222 18 C 0.049 3.951 19 N -0.157 5.157 20 C -0.095 4.095 21 C -0.009 4.009 22 O -0.309 6.309 23 C -0.009 4.009 24 C -0.093 4.093 25 N -0.095 5.095 26 C -0.192 4.192 27 H 0.099 0.901 28 H 0.145 0.855 29 H 0.114 0.886 30 H 0.151 0.849 31 H 0.145 0.855 32 H 0.160 0.840 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.100 -8.682 -0.926 8.732 hybrid contribution -1.032 1.947 -0.995 2.418 sum -1.132 -6.735 -1.921 7.095 Atomic orbital electron populations 1.69805 1.07944 1.30181 1.31452 1.26128 0.94837 1.02100 0.91925 0.86166 0.80590 0.79628 0.79704 1.18916 1.19972 1.18130 1.19754 0.98662 0.91142 1.35927 0.89421 1.18704 0.91880 0.93869 0.89025 1.21306 0.98837 0.97039 1.00524 1.21312 0.99088 0.93591 0.99979 1.18455 0.98446 0.89267 1.08610 1.19441 0.93481 0.92885 0.93759 1.21581 0.95729 0.98200 0.97289 1.21883 1.01394 0.93474 1.01853 1.22232 0.94069 0.97774 0.95127 1.67596 1.09632 1.31000 1.13939 1.19729 0.92855 0.87621 0.94934 1.60081 1.04369 1.50971 1.00263 1.22652 0.98296 0.98834 0.89717 1.22608 0.86067 0.96680 0.95496 1.87902 1.51596 1.57472 1.33968 1.22616 0.95131 1.00640 0.82500 1.22618 0.92082 0.95708 0.98927 1.67351 1.05298 1.30567 1.06319 1.22546 1.02837 0.87698 1.06082 0.90136 0.85548 0.88572 0.84930 0.85546 0.83988 0.93848 0.90428 0.89096 0.91599 0.91601 0.89134 0.90458 0.93774 0.85659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.03 10.84 55.55 0.60 -17.43 16 2 C 0.07 1.61 5.17 -17.32 -0.09 1.52 16 3 Si 0.92 16.78 29.60 -169.99 -5.03 11.75 16 4 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 5 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 6 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 7 C -0.43 -10.19 9.06 -37.88 -0.34 -10.53 16 8 H 0.09 1.98 7.91 -52.48 -0.42 1.57 16 9 C 0.07 1.73 5.61 -106.64 -0.60 1.13 16 10 C -0.15 -3.69 8.76 -39.02 -0.34 -4.03 16 11 C -0.12 -2.66 9.39 -39.53 -0.37 -3.03 16 12 C -0.01 -0.32 6.73 -82.77 -0.56 -0.87 16 13 C 0.01 0.17 5.91 -104.54 -0.62 -0.44 16 14 C -0.10 -1.70 9.51 -38.90 -0.37 -2.07 16 15 C -0.17 -2.38 10.09 -39.48 -0.40 -2.77 16 16 C 0.07 1.01 11.17 -17.47 -0.20 0.81 16 17 N -0.51 -9.12 9.59 -12.14 -0.12 -9.23 16 18 C 0.28 5.37 5.35 -155.00 -0.83 4.54 16 19 N -0.43 -8.04 2.41 -172.60 -0.42 -8.46 16 20 C 0.03 0.55 5.50 -3.71 -0.02 0.53 16 21 C 0.07 1.04 7.01 37.21 0.26 1.30 16 22 O -0.39 -6.24 10.83 -35.23 -0.38 -6.62 16 23 C 0.07 1.02 7.01 37.21 0.26 1.28 16 24 C 0.03 0.57 5.46 -3.71 -0.02 0.55 16 25 N -0.39 -8.93 8.03 -9.13 -0.07 -9.00 16 26 C -0.02 -0.57 10.97 -16.77 -0.18 -0.76 16 27 H 0.29 6.06 8.30 -40.82 -0.34 5.72 16 28 H 0.13 3.11 6.07 -52.48 -0.32 2.79 16 29 H 0.10 1.88 6.26 -52.49 -0.33 1.55 16 30 H 0.13 2.02 6.32 -52.48 -0.33 1.69 16 31 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 33 H 0.04 0.74 7.98 -51.93 -0.41 0.33 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.04 0.75 7.90 -51.93 -0.41 0.34 16 41 H 0.13 2.74 8.06 -52.49 -0.42 2.32 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -27.06 339.05 -9.88 -36.94 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.16 Total: 9.80 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -4.41 Total: -12.84 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.00 Total: -44.13 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.38 Total: -6.62 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.75 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.06 -9.88 -36.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243456585.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.693 kcal (2) G-P(sol) polarization free energy of solvation -27.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds