Wall clock time and date at job start Fri Apr 10 2020 22:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86794 * 119.99965 * 2 1 4 4 H 1.48496 * 109.47342 * 270.00118 * 3 2 1 5 5 H 1.48502 * 109.47265 * 30.00316 * 3 2 1 6 6 H 1.48504 * 109.46972 * 150.00004 * 3 2 1 7 7 C 1.39993 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99849 * 198.52727 * 7 2 1 9 9 C 1.41008 * 120.00168 * 18.52380 * 7 2 1 10 10 C 1.41341 * 120.54346 * 21.68999 * 9 7 2 11 11 C 1.36531 * 118.42773 * 179.71963 * 10 9 7 12 12 C 1.40021 * 119.45762 * 0.47936 * 11 10 9 13 13 C 1.47721 * 119.46106 * 179.78663 * 12 11 10 14 14 C 1.39883 * 120.60407 * 6.40479 * 13 12 11 15 15 C 1.38407 * 118.37243 * 180.28786 * 14 13 12 16 16 C 1.38339 * 119.49588 * 359.73290 * 15 14 13 17 17 N 1.31929 * 121.20773 * 359.97438 * 16 15 14 18 18 C 1.32354 * 121.76634 * 0.02562 * 17 16 15 19 19 N 1.38510 * 119.81446 * 180.02562 * 18 17 16 20 20 C 1.47022 * 110.99681 * 295.95967 * 19 18 17 21 21 C 1.53093 * 109.25451 * 182.35123 * 20 19 18 22 22 O 1.43023 * 109.29824 * 303.22180 * 21 20 19 23 23 C 1.43015 * 113.73729 * 58.64565 * 22 21 20 24 24 C 1.47013 * 111.00250 * 59.64213 * 19 18 17 25 25 N 1.33105 * 121.08206 * 359.50713 * 12 11 10 26 26 C 1.31256 * 121.71102 * 0.25673 * 25 12 11 27 27 H 0.96994 * 119.99770 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.78894 * 359.97438 * 10 9 7 29 29 H 1.07992 * 120.27326 * 180.24359 * 11 10 9 30 30 H 1.08003 * 120.81108 * 0.02562 * 14 13 12 31 31 H 1.08002 * 120.25251 * 179.70813 * 15 14 13 32 32 H 1.07999 * 119.39760 * 179.97438 * 16 15 14 33 33 H 1.08999 * 109.47132 * 62.44438 * 20 19 18 34 34 H 1.08998 * 109.54751 * 302.30850 * 20 19 18 35 35 H 1.08995 * 109.51087 * 183.26002 * 21 20 19 36 36 H 1.09005 * 109.50823 * 63.17969 * 21 20 19 37 37 H 1.09003 * 109.50694 * 61.26779 * 23 22 21 38 38 H 1.08997 * 109.50669 * 181.35517 * 23 22 21 39 39 H 1.09000 * 109.50380 * 57.67344 * 24 19 18 40 40 H 1.09001 * 109.54065 * 297.56609 * 24 19 18 41 41 H 1.07993 * 119.79577 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4401 0.7001 7 6 2.0082 -1.2124 -0.0005 8 1 3.0462 -1.2368 0.2967 9 6 1.3579 -2.4018 -0.3890 10 6 0.1963 -2.3557 -1.1929 11 6 -0.3952 -3.5337 -1.5485 12 6 0.1542 -4.7421 -1.1030 13 6 -0.4884 -6.0165 -1.4838 14 6 -1.5547 -6.0338 -2.3890 15 6 -2.1264 -7.2531 -2.7086 16 6 -1.6297 -8.4097 -2.1347 17 7 -0.6191 -8.3728 -1.2874 18 6 -0.0360 -7.2343 -0.9474 19 7 1.0226 -7.2426 -0.0542 20 6 0.5921 -7.7186 1.2685 21 6 1.7758 -7.6562 2.2373 22 8 2.8593 -8.4265 1.7100 23 6 3.3041 -7.9888 0.4231 24 6 2.1361 -8.0556 -0.5644 25 7 1.2492 -4.7616 -0.3464 26 6 1.8561 -3.6561 0.0175 27 1 -0.4849 0.8400 -0.0004 28 1 -0.2115 -1.4111 -1.5216 29 1 -1.2817 -3.5334 -2.1653 30 1 -1.9256 -5.1177 -2.8245 31 1 -2.9544 -7.3012 -3.4005 32 1 -2.0772 -9.3602 -2.3849 33 1 0.2416 -8.7476 1.1880 34 1 -0.2150 -7.0864 1.6387 35 1 1.4771 -8.0623 3.2037 36 1 2.0916 -6.6201 2.3599 37 1 3.6641 -6.9622 0.4922 38 1 4.1110 -8.6350 0.0777 39 1 2.4553 -7.6691 -1.5323 40 1 1.8114 -9.0903 -0.6748 41 1 2.7429 -3.7080 0.6315 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243456585.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:59 Heat of formation + Delta-G solvation = 26.730543 kcal Electronic energy + Delta-G solvation = -25634.075187 eV Core-core repulsion = 22092.541777 eV Total energy + Delta-G solvation = -3541.533410 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.64382 -40.08932 -39.63145 -36.54389 -36.11420 -33.93020 -32.50428 -32.13361 -31.95527 -30.77748 -27.98419 -27.14380 -24.95527 -24.66357 -24.19498 -22.72839 -22.24721 -21.31095 -19.31799 -18.60456 -17.79675 -17.36492 -17.09947 -17.00653 -16.38616 -16.15087 -15.96760 -15.91193 -15.60148 -15.23498 -14.76112 -14.62546 -14.42976 -14.06331 -14.00201 -13.60797 -13.41398 -13.30886 -13.11337 -12.93606 -12.64795 -12.48372 -12.29872 -12.21875 -11.68457 -11.57943 -11.32659 -10.85806 -10.82028 -10.46664 -10.15789 -10.06234 -9.84770 -9.12130 -9.05599 -8.69076 -6.40129 -0.09185 0.31551 1.01893 1.22048 1.39186 1.52558 1.59815 2.15328 2.62981 2.68045 2.94269 2.97731 3.60566 3.84312 3.85295 3.96674 4.01788 4.11745 4.20002 4.20970 4.27192 4.37693 4.38788 4.45601 4.58453 4.68069 4.71179 4.74900 4.84305 4.87483 4.95475 5.02564 5.05591 5.14896 5.27386 5.31545 5.43019 5.63937 5.85408 5.97248 5.97659 6.04202 6.16912 6.48547 6.51528 6.69400 6.79558 7.07140 7.88630 8.14115 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.015002 B = 0.004422 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.970212 B = 6330.958925 C = 7793.823162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.036 3.964 3 Si 0.988 3.012 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.255 1.255 7 C -0.461 4.461 8 H 0.089 0.911 9 C 0.044 3.956 10 C -0.170 4.170 11 C -0.125 4.125 12 C -0.014 4.014 13 C -0.034 4.034 14 C -0.096 4.096 15 C -0.154 4.154 16 C 0.077 3.923 17 N -0.527 5.527 18 C 0.268 3.732 19 N -0.454 5.454 20 C 0.039 3.961 21 C 0.073 3.927 22 O -0.395 6.395 23 C 0.072 3.928 24 C 0.040 3.960 25 N -0.393 5.393 26 C -0.043 4.043 27 H 0.295 0.705 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.146 0.854 31 H 0.173 0.827 32 H 0.182 0.818 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.119 0.881 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.121 0.879 39 H 0.067 0.933 40 H 0.042 0.958 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.776 -8.938 -2.700 9.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.178 1.178 7 C -0.489 4.489 8 H 0.107 0.893 9 C 0.040 3.960 10 C -0.195 4.195 11 C -0.145 4.145 12 C -0.149 4.149 13 C -0.038 4.038 14 C -0.123 4.123 15 C -0.173 4.173 16 C -0.082 4.082 17 N -0.240 5.240 18 C 0.040 3.960 19 N -0.176 5.176 20 C -0.089 4.089 21 C -0.004 4.004 22 O -0.313 6.313 23 C -0.005 4.005 24 C -0.087 4.087 25 N -0.099 5.099 26 C -0.208 4.208 27 H 0.106 0.894 28 H 0.135 0.865 29 H 0.140 0.860 30 H 0.164 0.836 31 H 0.190 0.810 32 H 0.199 0.801 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.137 0.863 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.138 0.862 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.098 -10.038 -1.880 10.272 hybrid contribution -0.914 2.054 -0.813 2.391 sum -2.012 -7.985 -2.693 8.664 Atomic orbital electron populations 1.69836 1.09288 1.31465 1.32199 1.26927 0.95486 1.04952 0.90841 0.85098 0.79195 0.75211 0.79727 1.18540 1.19105 1.17807 1.19963 0.99023 0.92054 1.37880 0.89309 1.18976 0.92597 0.94634 0.89827 1.21332 0.99444 0.97373 1.01390 1.21560 0.99786 0.93025 1.00113 1.18978 0.97905 0.90674 1.07362 1.19545 0.95711 0.92018 0.96516 1.21887 0.94413 1.00106 0.95925 1.22326 1.01672 0.91832 1.01456 1.23045 0.92367 0.99866 0.92915 1.67685 1.10855 1.30249 1.15175 1.19823 0.93167 0.87902 0.95118 1.60053 1.04921 1.51842 1.00827 1.22597 0.98565 0.98178 0.89543 1.22644 0.85328 0.96158 0.96268 1.87898 1.51641 1.57535 1.34264 1.22684 0.95188 1.00729 0.81915 1.22576 0.92109 0.95105 0.98906 1.67413 1.05734 1.30147 1.06643 1.22682 1.03446 0.87874 1.06805 0.89353 0.86497 0.86018 0.83597 0.81003 0.80094 0.93968 0.91788 0.86295 0.93088 0.92888 0.86157 0.91413 0.93963 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.72 10.84 21.84 0.24 -38.48 16 2 C 0.04 1.67 5.17 85.27 0.44 2.11 16 3 Si 0.99 34.77 29.60 68.60 2.03 36.80 16 4 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 5 H -0.27 -8.94 7.11 99.48 0.71 -8.23 16 6 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 7 C -0.46 -23.01 9.06 23.37 0.21 -22.80 16 8 H 0.09 4.21 7.91 -2.91 -0.02 4.19 16 9 C 0.04 2.30 5.61 -21.17 -0.12 2.18 16 10 C -0.17 -8.57 8.76 22.63 0.20 -8.37 16 11 C -0.12 -5.67 9.39 22.30 0.21 -5.46 16 12 C -0.01 -0.64 6.73 41.89 0.28 -0.36 16 13 C -0.03 -1.32 5.91 -19.81 -0.12 -1.44 16 14 C -0.10 -3.00 9.51 22.71 0.22 -2.78 16 15 C -0.15 -3.71 10.09 22.33 0.23 -3.49 16 16 C 0.08 2.02 11.17 84.70 0.95 2.96 16 17 N -0.53 -17.75 9.59 -192.33 -1.84 -19.60 16 18 C 0.27 10.18 5.35 133.59 0.71 10.89 16 19 N -0.45 -16.88 2.41 -699.97 -1.69 -18.57 16 20 C 0.04 1.31 5.50 86.31 0.47 1.78 16 21 C 0.07 2.20 7.01 72.01 0.50 2.70 16 22 O -0.39 -12.25 10.83 -148.98 -1.61 -13.87 16 23 C 0.07 2.11 7.01 72.02 0.50 2.61 16 24 C 0.04 1.34 5.46 86.32 0.47 1.81 16 25 N -0.39 -18.68 8.03 -182.79 -1.47 -20.15 16 26 C -0.04 -2.10 10.97 85.45 0.94 -1.16 16 27 H 0.30 12.70 8.30 -92.71 -0.77 11.93 16 28 H 0.12 6.01 6.07 -2.91 -0.02 5.99 16 29 H 0.12 4.71 6.26 -2.91 -0.02 4.69 16 30 H 0.15 4.06 6.32 -2.91 -0.02 4.04 16 31 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 32 H 0.18 3.29 8.06 -2.91 -0.02 3.27 16 33 H 0.04 1.42 7.98 -2.39 -0.02 1.40 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 36 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.04 1.40 7.90 -2.39 -0.02 1.38 16 41 H 0.13 6.05 8.06 -2.91 -0.02 6.02 16 Total: -1.00 -60.90 339.05 2.80 -58.10 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: 1.05 Total: 34.57 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 6.10 Total: -18.80 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -4.76 Total: -96.80 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -1.61 Total: -13.87 kcal Atomic # 14 Polarization: 34.77 SS G_CDS: 2.03 Total: 36.80 kcal Total: -60.90 2.80 -58.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243456585.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.829 kcal (2) G-P(sol) polarization free energy of solvation -60.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds