Wall clock time and date at job start Fri Apr 10 2020 22:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86804 * 120.00253 * 2 1 4 4 H 1.48501 * 109.46813 * 240.00329 * 3 2 1 5 5 H 1.48493 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46852 * 120.00477 * 3 2 1 7 7 C 1.40036 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00183 * 180.02562 * 7 2 1 9 9 C 1.41433 * 119.99750 * 0.26588 * 7 2 1 10 10 C 1.40443 * 119.77378 * 179.44837 * 9 7 2 11 11 C 1.39395 * 118.82257 * 179.75687 * 10 9 7 12 12 C 1.48244 * 120.82615 * 180.29159 * 11 10 9 13 13 C 1.39543 * 120.57016 * 310.23131 * 12 11 10 14 14 C 1.38556 * 118.39509 * 180.02562 * 13 12 11 15 15 C 1.38204 * 119.45612 * 0.02562 * 14 13 12 16 16 N 1.31932 * 121.13205 * 359.97307 * 15 14 13 17 17 C 1.32353 * 121.74911 * 359.74930 * 16 15 14 18 18 N 1.38718 * 119.79220 * 180.28684 * 17 16 15 19 19 C 1.47012 * 110.99744 * 68.40903 * 18 17 16 20 20 C 1.53100 * 109.25427 * 177.60338 * 19 18 17 21 21 O 1.43013 * 109.25763 * 56.85208 * 20 19 18 22 22 C 1.43020 * 113.74012 * 301.32563 * 21 20 19 23 23 C 1.47013 * 111.00349 * 304.77365 * 18 17 16 24 24 C 1.40102 * 118.34564 * 0.51610 * 11 10 9 25 25 C 1.38459 * 119.41818 * 359.74485 * 24 11 10 26 26 N 1.31496 * 121.15541 * 359.97438 * 25 24 11 27 27 H 0.97006 * 119.99177 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.58417 * 0.03313 * 10 9 7 29 29 H 1.08005 * 120.80661 * 359.97438 * 13 12 11 30 30 H 1.07999 * 120.27126 * 180.02562 * 14 13 12 31 31 H 1.08001 * 119.43290 * 179.97438 * 15 14 13 32 32 H 1.09004 * 109.50928 * 297.53952 * 19 18 17 33 33 H 1.09000 * 109.50780 * 57.67168 * 19 18 17 34 34 H 1.08996 * 109.51108 * 296.91117 * 20 19 18 35 35 H 1.09008 * 109.53757 * 176.80250 * 20 19 18 36 36 H 1.09007 * 109.50401 * 298.74080 * 22 21 20 37 37 H 1.08996 * 109.54633 * 178.63047 * 22 21 20 38 38 H 1.09000 * 109.50254 * 302.32675 * 23 18 17 39 39 H 1.08998 * 109.50411 * 62.45236 * 23 18 17 40 40 H 1.07994 * 120.28691 * 179.73181 * 24 11 10 41 41 H 1.07997 * 119.41798 * 179.97438 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0951 1.6963 -1.2126 5 1 1.2766 2.7464 0.0006 6 1 3.0953 1.6962 1.2124 7 6 2.0075 -1.2128 -0.0005 8 1 3.0875 -1.2128 -0.0001 9 6 1.3003 -2.4376 -0.0068 10 6 2.0072 -3.6510 -0.0190 11 6 1.2903 -4.8465 -0.0198 12 6 1.9913 -6.1527 -0.0260 13 6 3.0073 -6.4085 -0.9477 14 6 3.6319 -7.6448 -0.9137 15 6 3.2350 -8.5812 0.0222 16 7 2.2718 -8.3179 0.8844 17 6 1.6479 -7.1508 0.8967 18 7 0.6446 -6.9153 1.8253 19 6 1.1947 -6.8358 3.1864 20 6 0.0653 -6.5163 4.1695 21 8 -0.9551 -7.5117 4.0552 22 6 -1.5135 -7.6159 2.7427 23 6 -0.4002 -7.9464 1.7452 24 6 -0.1093 -4.7827 -0.0194 25 6 -0.7338 -3.5470 -0.0129 26 7 -0.0363 -2.4323 -0.0065 27 1 -0.4849 0.8402 0.0004 28 1 3.0872 -3.6578 -0.0232 29 1 3.2993 -5.6611 -1.6707 30 1 4.4223 -7.8749 -1.6127 31 1 3.7219 -9.5449 0.0481 32 1 1.6491 -7.7904 3.4517 33 1 1.9479 -6.0490 3.2292 34 1 -0.3536 -5.5373 3.9370 35 1 0.4576 -6.5123 5.1865 36 1 -1.9783 -6.6687 2.4687 37 1 -2.2630 -8.4071 2.7270 38 1 -0.8111 -7.9703 0.7359 39 1 0.0287 -8.9187 1.9873 40 1 -0.6958 -5.6895 -0.0243 41 1 -1.8127 -3.4979 -0.0130 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243462317.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:12 Heat of formation + Delta-G solvation = 42.643546 kcal Electronic energy + Delta-G solvation = -25605.909491 eV Core-core repulsion = 22065.066121 eV Total energy + Delta-G solvation = -3540.843371 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.61656 -38.86480 -37.94319 -35.53412 -33.84849 -32.83129 -31.12713 -31.04310 -29.96250 -28.99387 -26.67772 -25.64492 -23.97092 -23.73210 -22.55121 -21.21373 -20.66645 -20.27421 -17.67189 -17.35485 -16.39381 -16.07677 -15.70166 -15.41701 -15.15753 -14.97317 -14.75063 -14.24112 -14.15324 -14.04403 -13.66415 -13.33048 -13.08365 -12.76362 -12.49321 -12.30687 -12.12467 -11.65698 -11.44007 -11.27479 -11.18726 -11.12630 -10.80400 -10.57179 -10.44445 -10.03040 -9.88213 -9.64707 -9.42664 -9.30919 -8.87972 -8.39605 -7.78513 -7.59718 -7.54690 -6.38456 -4.50640 1.15323 1.40303 2.79135 2.94934 3.08269 3.10164 3.21486 3.65277 3.92303 3.94032 3.95497 4.58529 4.76593 4.97731 5.03402 5.10491 5.20440 5.24483 5.25656 5.29482 5.38153 5.48850 5.60736 5.70430 5.82984 5.90937 5.94086 5.96601 6.06442 6.09231 6.24627 6.33158 6.54871 6.67231 6.72529 6.88486 6.91972 7.13122 7.18855 7.30440 7.43352 7.54815 7.73042 7.99393 8.07999 8.23151 8.66804 8.92609 10.12953 10.33645 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.014553 B = 0.004430 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.487618 B = 6318.546589 C = 7452.456227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.718 5.718 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.437 4.437 8 H 0.081 0.919 9 C 0.256 3.744 10 C -0.255 4.255 11 C 0.009 3.991 12 C -0.033 4.033 13 C -0.069 4.069 14 C -0.174 4.174 15 C 0.091 3.909 16 N -0.513 5.513 17 C 0.291 3.709 18 N -0.465 5.465 19 C 0.028 3.972 20 C 0.066 3.934 21 O -0.387 6.387 22 C 0.065 3.935 23 C 0.027 3.973 24 C -0.262 4.262 25 C 0.117 3.883 26 N -0.479 5.479 27 H 0.272 0.728 28 H 0.096 0.904 29 H 0.139 0.861 30 H 0.133 0.867 31 H 0.149 0.851 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.180 -12.167 1.836 12.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.154 4.154 3 Si 0.729 3.271 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.469 4.469 8 H 0.099 0.901 9 C 0.131 3.869 10 C -0.278 4.278 11 C 0.002 3.998 12 C -0.036 4.036 13 C -0.095 4.095 14 C -0.194 4.194 15 C -0.068 4.068 16 N -0.224 5.224 17 C 0.062 3.938 18 N -0.188 5.188 19 C -0.099 4.099 20 C -0.011 4.011 21 O -0.306 6.306 22 C -0.012 4.012 23 C -0.100 4.100 24 C -0.285 4.285 25 C -0.047 4.047 26 N -0.192 5.192 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.156 0.844 30 H 0.151 0.849 31 H 0.167 0.833 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.112 0.888 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.039 -11.486 2.514 11.803 hybrid contribution 1.666 -0.141 -0.766 1.839 sum 2.705 -11.626 1.748 12.064 Atomic orbital electron populations 1.70124 1.07102 1.27727 1.28992 1.26023 0.94866 1.00889 0.93624 0.86439 0.80119 0.80712 0.79827 1.19009 1.20233 1.19009 1.19527 0.94065 0.89422 1.43839 0.90123 1.18472 0.88306 0.91500 0.88619 1.21765 0.98150 0.92494 1.15425 1.18230 0.93220 0.89225 0.99100 1.19766 0.95131 0.94836 0.93903 1.21756 0.93737 0.96638 0.97414 1.22026 1.01745 0.94731 1.00851 1.22389 0.93634 0.99169 0.91571 1.67620 1.08639 1.21885 1.24289 1.19730 0.92207 0.88363 0.93458 1.60167 1.09129 1.45674 1.03858 1.22752 0.97971 1.01749 0.87427 1.22660 0.87650 0.92102 0.98704 1.87937 1.54272 1.58483 1.29871 1.22665 0.94424 1.02187 0.81950 1.22730 0.92969 0.93513 1.00827 1.21167 0.92879 0.97561 1.16912 1.22431 0.98686 0.88716 0.94903 1.68715 1.07193 1.26874 1.16422 0.91649 0.88589 0.84354 0.84950 0.83349 0.93139 0.89731 0.91605 0.88454 0.91725 0.88557 0.90005 0.92755 0.88789 0.86558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.98 11.46 55.55 0.64 -18.35 16 2 C 0.07 1.79 5.50 -17.34 -0.10 1.70 16 3 Si 0.90 18.45 29.56 -169.99 -5.02 13.42 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 7 C -0.44 -11.53 9.14 -37.69 -0.34 -11.87 16 8 H 0.08 1.99 7.85 -52.49 -0.41 1.58 16 9 C 0.26 6.84 6.55 -85.02 -0.56 6.28 16 10 C -0.26 -6.06 9.38 -38.32 -0.36 -6.42 16 11 C 0.01 0.20 5.28 -104.65 -0.55 -0.35 16 12 C -0.03 -0.60 5.54 -104.56 -0.58 -1.18 16 13 C -0.07 -1.08 9.70 -38.98 -0.38 -1.46 16 14 C -0.17 -2.21 10.09 -39.48 -0.40 -2.61 16 15 C 0.09 1.20 11.16 -17.52 -0.20 1.01 16 16 N -0.51 -8.15 9.59 -12.21 -0.12 -8.27 16 17 C 0.29 5.02 5.30 -154.93 -0.82 4.20 16 18 N -0.47 -7.67 2.98 -172.65 -0.52 -8.18 16 19 C 0.03 0.43 5.53 -3.71 -0.02 0.41 16 20 C 0.07 0.91 7.01 37.21 0.26 1.17 16 21 O -0.39 -5.60 10.83 -35.23 -0.38 -5.98 16 22 C 0.06 0.84 7.01 37.21 0.26 1.10 16 23 C 0.03 0.39 5.35 -3.71 -0.02 0.37 16 24 C -0.26 -5.67 8.88 -38.80 -0.34 -6.02 16 25 C 0.12 2.77 11.16 -17.61 -0.20 2.58 16 26 N -0.48 -12.94 7.85 -11.22 -0.09 -13.03 16 27 H 0.27 6.56 8.29 -40.82 -0.34 6.22 16 28 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 29 H 0.14 2.05 8.06 -52.48 -0.42 1.63 16 30 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 31 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 32 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.10 1.11 8.14 -51.92 -0.42 0.69 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.05 0.80 7.83 -51.93 -0.41 0.39 16 40 H 0.09 1.87 7.64 -52.49 -0.40 1.47 16 41 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 344.98 15.07 5.20 5.20 Total: -1.00 -29.99 344.98 -10.06 -40.05 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.42 Total: 6.24 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -4.34 Total: -11.10 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.08 Total: -47.83 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.38 Total: -5.98 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.02 Total: 13.42 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.99 -10.06 -40.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243462317.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.689 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds