Wall clock time and date at job start Fri Apr 10 2020 22:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86804 * 120.00253 * 2 1 4 4 H 1.48501 * 109.46813 * 240.00329 * 3 2 1 5 5 H 1.48493 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46852 * 120.00477 * 3 2 1 7 7 C 1.40036 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00183 * 180.02562 * 7 2 1 9 9 C 1.41433 * 119.99750 * 0.26588 * 7 2 1 10 10 C 1.40443 * 119.77378 * 179.44837 * 9 7 2 11 11 C 1.39395 * 118.82257 * 179.75687 * 10 9 7 12 12 C 1.48244 * 120.82615 * 180.29159 * 11 10 9 13 13 C 1.39543 * 120.57016 * 310.23131 * 12 11 10 14 14 C 1.38556 * 118.39509 * 180.02562 * 13 12 11 15 15 C 1.38204 * 119.45612 * 0.02562 * 14 13 12 16 16 N 1.31932 * 121.13205 * 359.97307 * 15 14 13 17 17 C 1.32353 * 121.74911 * 359.74930 * 16 15 14 18 18 N 1.38718 * 119.79220 * 180.28684 * 17 16 15 19 19 C 1.47012 * 110.99744 * 68.40903 * 18 17 16 20 20 C 1.53100 * 109.25427 * 177.60338 * 19 18 17 21 21 O 1.43013 * 109.25763 * 56.85208 * 20 19 18 22 22 C 1.43020 * 113.74012 * 301.32563 * 21 20 19 23 23 C 1.47013 * 111.00349 * 304.77365 * 18 17 16 24 24 C 1.40102 * 118.34564 * 0.51610 * 11 10 9 25 25 C 1.38459 * 119.41818 * 359.74485 * 24 11 10 26 26 N 1.31496 * 121.15541 * 359.97438 * 25 24 11 27 27 H 0.97006 * 119.99177 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.58417 * 0.03313 * 10 9 7 29 29 H 1.08005 * 120.80661 * 359.97438 * 13 12 11 30 30 H 1.07999 * 120.27126 * 180.02562 * 14 13 12 31 31 H 1.08001 * 119.43290 * 179.97438 * 15 14 13 32 32 H 1.09004 * 109.50928 * 297.53952 * 19 18 17 33 33 H 1.09000 * 109.50780 * 57.67168 * 19 18 17 34 34 H 1.08996 * 109.51108 * 296.91117 * 20 19 18 35 35 H 1.09008 * 109.53757 * 176.80250 * 20 19 18 36 36 H 1.09007 * 109.50401 * 298.74080 * 22 21 20 37 37 H 1.08996 * 109.54633 * 178.63047 * 22 21 20 38 38 H 1.09000 * 109.50254 * 302.32675 * 23 18 17 39 39 H 1.08998 * 109.50411 * 62.45236 * 23 18 17 40 40 H 1.07994 * 120.28691 * 179.73181 * 24 11 10 41 41 H 1.07997 * 119.41798 * 179.97438 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0951 1.6963 -1.2126 5 1 1.2766 2.7464 0.0006 6 1 3.0953 1.6962 1.2124 7 6 2.0075 -1.2128 -0.0005 8 1 3.0875 -1.2128 -0.0001 9 6 1.3003 -2.4376 -0.0068 10 6 2.0072 -3.6510 -0.0190 11 6 1.2903 -4.8465 -0.0198 12 6 1.9913 -6.1527 -0.0260 13 6 3.0073 -6.4085 -0.9477 14 6 3.6319 -7.6448 -0.9137 15 6 3.2350 -8.5812 0.0222 16 7 2.2718 -8.3179 0.8844 17 6 1.6479 -7.1508 0.8967 18 7 0.6446 -6.9153 1.8253 19 6 1.1947 -6.8358 3.1864 20 6 0.0653 -6.5163 4.1695 21 8 -0.9551 -7.5117 4.0552 22 6 -1.5135 -7.6159 2.7427 23 6 -0.4002 -7.9464 1.7452 24 6 -0.1093 -4.7827 -0.0194 25 6 -0.7338 -3.5470 -0.0129 26 7 -0.0363 -2.4323 -0.0065 27 1 -0.4849 0.8402 0.0004 28 1 3.0872 -3.6578 -0.0232 29 1 3.2993 -5.6611 -1.6707 30 1 4.4223 -7.8749 -1.6127 31 1 3.7219 -9.5449 0.0481 32 1 1.6491 -7.7904 3.4517 33 1 1.9479 -6.0490 3.2292 34 1 -0.3536 -5.5373 3.9370 35 1 0.4576 -6.5123 5.1865 36 1 -1.9783 -6.6687 2.4687 37 1 -2.2630 -8.4071 2.7270 38 1 -0.8111 -7.9703 0.7359 39 1 0.0287 -8.9187 1.9873 40 1 -0.6958 -5.6895 -0.0243 41 1 -1.8127 -3.4979 -0.0130 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243462317.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:11 Heat of formation + Delta-G solvation = 25.415560 kcal Electronic energy + Delta-G solvation = -25606.656553 eV Core-core repulsion = 22065.066121 eV Total energy + Delta-G solvation = -3541.590432 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.83740 -40.09112 -39.67016 -36.69323 -35.61639 -34.38906 -32.32792 -32.22674 -31.84266 -30.46892 -27.90339 -27.49356 -25.19105 -25.01883 -23.84287 -22.97591 -22.28577 -21.44402 -19.28083 -18.67001 -17.74666 -17.28549 -17.18845 -16.71440 -16.43590 -16.26778 -16.03279 -15.89322 -15.82691 -15.35722 -14.94718 -14.60864 -14.44745 -14.19574 -13.99193 -13.95834 -13.40401 -13.15645 -12.83549 -12.69536 -12.68123 -12.57656 -12.39118 -12.15498 -11.77456 -11.67256 -11.27112 -11.01482 -10.88259 -10.59432 -10.23596 -9.66779 -9.53461 -9.41969 -9.30308 -8.24748 -6.46893 -0.07764 0.20000 0.96565 1.25035 1.41174 1.53142 1.57142 2.24545 2.48097 2.72432 2.86631 2.91555 3.46052 3.82561 3.86521 3.91885 3.99657 4.02525 4.11212 4.15207 4.18943 4.24914 4.30374 4.35578 4.49855 4.61382 4.62306 4.73452 4.79892 4.86256 4.88128 4.94053 5.02235 5.10955 5.21456 5.29179 5.48833 5.51889 5.70161 5.73923 5.92401 6.08709 6.15481 6.25838 6.32204 6.77291 6.90205 7.00186 8.24271 8.49754 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.014553 B = 0.004430 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.487618 B = 6318.546589 C = 7452.456227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.027 3.973 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.475 4.475 8 H 0.085 0.915 9 C 0.227 3.773 10 C -0.271 4.271 11 C 0.023 3.977 12 C -0.071 4.071 13 C -0.074 4.074 14 C -0.158 4.158 15 C 0.099 3.901 16 N -0.525 5.525 17 C 0.286 3.714 18 N -0.484 5.484 19 C 0.033 3.967 20 C 0.070 3.930 21 O -0.394 6.394 22 C 0.065 3.935 23 C 0.032 3.968 24 C -0.250 4.250 25 C 0.100 3.900 26 N -0.516 5.516 27 H 0.277 0.723 28 H 0.101 0.899 29 H 0.141 0.859 30 H 0.175 0.825 31 H 0.190 0.810 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.122 0.878 36 H 0.055 0.945 37 H 0.126 0.874 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.112 0.888 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 -14.119 1.630 14.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.194 4.194 3 Si 0.803 3.197 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.507 4.507 8 H 0.103 0.897 9 C 0.101 3.899 10 C -0.294 4.294 11 C 0.015 3.985 12 C -0.075 4.075 13 C -0.100 4.100 14 C -0.177 4.177 15 C -0.059 4.059 16 N -0.237 5.237 17 C 0.058 3.942 18 N -0.208 5.208 19 C -0.094 4.094 20 C -0.007 4.007 21 O -0.312 6.312 22 C -0.011 4.011 23 C -0.095 4.095 24 C -0.273 4.273 25 C -0.064 4.064 26 N -0.230 5.230 27 H 0.088 0.912 28 H 0.119 0.881 29 H 0.158 0.842 30 H 0.193 0.807 31 H 0.207 0.793 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.140 0.860 36 H 0.074 0.926 37 H 0.144 0.856 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.130 0.870 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.339 -13.464 2.310 13.860 hybrid contribution 1.294 0.189 -0.740 1.503 sum 3.633 -13.275 1.570 13.853 Atomic orbital electron populations 1.70232 1.08792 1.28924 1.30220 1.26922 0.95674 1.04323 0.92529 0.85260 0.78658 0.75751 0.79998 1.18280 1.19332 1.18460 1.19880 0.94528 0.90490 1.45778 0.89689 1.18881 0.88772 0.92875 0.89348 1.21834 0.98477 0.92653 1.16405 1.18473 0.93230 0.90362 0.96412 1.19683 0.97311 0.93859 0.96649 1.21933 0.93074 0.98163 0.96815 1.22416 1.01577 0.92869 1.00840 1.23172 0.92108 1.00640 0.90024 1.67719 1.09605 1.21056 1.25357 1.19710 0.92568 0.88537 0.93394 1.60153 1.09709 1.46767 1.04184 1.22695 0.98102 1.01154 0.87419 1.22676 0.87148 0.91181 0.99674 1.87931 1.54284 1.58416 1.30595 1.22795 0.94426 1.02810 0.81101 1.22728 0.92676 0.92853 1.01204 1.21346 0.93375 0.97398 1.15176 1.22807 0.99568 0.88983 0.95013 1.68656 1.07736 1.28521 1.18047 0.91220 0.88075 0.84158 0.80742 0.79333 0.93039 0.91228 0.93270 0.86023 0.92626 0.85630 0.89963 0.92950 0.86980 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.64 11.46 21.84 0.25 -41.39 16 2 C 0.03 1.38 5.50 85.29 0.47 1.85 16 3 Si 0.98 38.55 29.56 68.60 2.03 40.58 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.48 -26.09 9.14 23.49 0.21 -25.88 16 8 H 0.08 4.36 7.85 -2.91 -0.02 4.34 16 9 C 0.23 12.66 6.55 40.19 0.26 12.92 16 10 C -0.27 -13.32 9.38 23.09 0.22 -13.11 16 11 C 0.02 0.98 5.28 -19.89 -0.10 0.88 16 12 C -0.07 -2.58 5.54 -19.83 -0.11 -2.69 16 13 C -0.07 -2.17 9.70 22.66 0.22 -1.95 16 14 C -0.16 -3.40 10.09 22.34 0.23 -3.18 16 15 C 0.10 2.22 11.16 84.67 0.95 3.17 16 16 N -0.53 -15.42 9.59 -192.55 -1.85 -17.27 16 17 C 0.29 9.54 5.30 133.44 0.71 10.25 16 18 N -0.48 -15.72 2.98 -700.14 -2.09 -17.81 16 19 C 0.03 1.01 5.53 86.32 0.48 1.48 16 20 C 0.07 1.91 7.01 72.02 0.50 2.41 16 21 O -0.39 -10.89 10.83 -148.98 -1.61 -12.50 16 22 C 0.07 1.62 7.01 72.01 0.50 2.12 16 23 C 0.03 0.89 5.35 86.31 0.46 1.35 16 24 C -0.25 -10.99 8.88 22.78 0.20 -10.79 16 25 C 0.10 4.86 11.16 84.80 0.95 5.80 16 26 N -0.52 -29.10 7.85 -189.40 -1.49 -30.58 16 27 H 0.28 13.80 8.29 -92.70 -0.77 13.03 16 28 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 29 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 30 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 31 H 0.19 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.05 1.53 8.07 -2.38 -0.02 1.51 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 35 H 0.12 2.65 8.14 -2.38 -0.02 2.63 16 36 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.05 1.46 7.83 -2.39 -0.02 1.44 16 40 H 0.11 4.45 7.64 -2.91 -0.02 4.43 16 41 H 0.13 5.79 8.06 -2.91 -0.02 5.77 16 Total: -1.00 -67.86 344.98 2.42 -65.44 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 1.03 Total: 28.89 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 6.14 Total: -15.35 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -5.17 Total: -107.06 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -1.61 Total: -12.50 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -67.86 2.42 -65.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243462317.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.856 kcal (2) G-P(sol) polarization free energy of solvation -67.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds