Wall clock time and date at job start Fri Apr 10 2020 22:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30698 * 1 3 3 Si 1.86803 * 119.99925 * 2 1 4 4 H 1.48498 * 109.47387 * 270.00257 * 3 2 1 5 5 H 1.48505 * 109.46857 * 30.00742 * 3 2 1 6 6 H 1.48506 * 109.46891 * 150.00152 * 3 2 1 7 7 C 1.40159 * 120.00415 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00408 * 166.38123 * 7 2 1 9 9 C 1.40836 * 119.99413 * 346.38061 * 7 2 1 10 10 C 1.41148 * 121.11809 * 332.79874 * 9 7 2 11 11 C 1.36424 * 119.11965 * 179.97438 * 10 9 7 12 12 N 1.32253 * 121.54494 * 359.97438 * 11 10 9 13 13 C 1.31621 * 122.51559 * 0.02562 * 12 11 10 14 14 C 1.39454 * 120.64298 * 0.25661 * 13 12 11 15 15 C 1.47620 * 120.79730 * 179.72447 * 14 13 12 16 16 C 1.39928 * 120.60588 * 293.50541 * 15 14 13 17 17 C 1.38407 * 118.36504 * 179.80300 * 16 15 14 18 18 C 1.38348 * 119.50193 * 0.42882 * 17 16 15 19 19 N 1.31940 * 121.21819 * 359.81508 * 18 17 16 20 20 C 1.32328 * 121.77936 * 359.97243 * 19 18 17 21 21 N 1.38531 * 119.83001 * 180.02562 * 20 19 18 22 22 C 1.47011 * 110.99944 * 95.46832 * 21 20 19 23 23 C 1.53099 * 109.25901 * 177.61402 * 22 21 20 24 24 O 1.43011 * 109.26009 * 56.84549 * 23 22 21 25 25 C 1.43016 * 113.74067 * 301.33581 * 24 23 22 26 26 C 1.47017 * 110.99405 * 331.83566 * 21 20 19 27 27 H 0.97001 * 120.00488 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.44226 * 359.95689 * 10 9 7 29 29 H 1.08008 * 119.22860 * 180.02562 * 11 10 9 30 30 H 1.08000 * 119.67584 * 179.97438 * 13 12 11 31 31 H 1.07993 * 120.81647 * 359.97438 * 16 15 14 32 32 H 1.07996 * 120.24526 * 180.19804 * 17 16 15 33 33 H 1.08007 * 119.39304 * 179.78543 * 18 17 16 34 34 H 1.09004 * 109.50961 * 297.54477 * 22 21 20 35 35 H 1.09003 * 109.50717 * 57.67686 * 22 21 20 36 36 H 1.09006 * 109.50037 * 296.91266 * 23 22 21 37 37 H 1.08994 * 109.54366 * 176.80944 * 23 22 21 38 38 H 1.09001 * 109.50766 * 298.73042 * 25 24 23 39 39 H 1.08998 * 109.54435 * 178.62658 * 25 24 23 40 40 H 1.09000 * 109.50813 * 302.32422 * 26 21 20 41 41 H 1.09004 * 109.50582 * 62.45570 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.4884 2.0465 -1.4000 5 1 1.4384 2.6526 0.7002 6 1 3.5386 1.4402 0.7000 7 6 2.0079 -1.2138 -0.0005 8 1 3.0650 -1.2268 -0.2208 9 6 1.3334 -2.4164 0.2861 10 6 0.1790 -2.4296 1.0982 11 6 -0.4426 -3.6178 1.3492 12 7 0.0109 -4.7551 0.8493 13 6 1.0809 -4.8152 0.0851 14 6 1.7955 -3.6597 -0.2294 15 6 2.9995 -3.7240 -1.0812 16 6 4.1548 -4.3745 -0.6338 17 6 5.2555 -4.4105 -1.4721 18 6 5.1876 -3.8013 -2.7123 19 7 4.0904 -3.1884 -3.1140 20 6 3.0083 -3.1277 -2.3547 21 7 1.8779 -2.4740 -2.8171 22 6 0.9353 -3.4211 -3.4302 23 6 -0.3218 -2.6675 -3.8725 24 8 0.0490 -1.6163 -4.7684 25 6 0.9659 -0.6751 -4.2036 26 6 2.2361 -1.4085 -3.7647 27 1 -0.4851 0.8400 0.0004 28 1 -0.2070 -1.5113 1.5157 29 1 -1.3263 -3.6299 1.9701 30 1 1.4112 -5.7693 -0.2984 31 1 4.1858 -4.8395 0.3404 32 1 6.1619 -4.9072 -1.1588 33 1 6.0488 -3.8274 -3.3637 34 1 1.4022 -3.8900 -4.2964 35 1 0.6640 -4.1866 -2.7032 36 1 -0.8181 -2.2436 -2.9994 37 1 -0.9998 -3.3548 -4.3785 38 1 0.5071 -0.1932 -3.3403 39 1 1.2199 0.0787 -4.9488 40 1 2.9142 -0.7048 -3.2818 41 1 2.7238 -1.8453 -4.6362 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243462568.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:15 Heat of formation + Delta-G solvation = 35.238036 kcal Electronic energy + Delta-G solvation = -26930.805528 eV Core-core repulsion = 23389.641030 eV Total energy + Delta-G solvation = -3541.164498 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.26588 -38.54462 -38.03763 -35.18391 -34.15727 -32.76138 -30.83751 -30.72007 -30.11079 -28.56768 -26.46736 -25.80980 -23.87856 -23.05865 -22.16159 -21.45200 -20.38632 -19.93668 -17.60968 -17.19180 -16.11987 -15.73999 -15.55397 -15.44526 -14.82561 -14.67720 -14.59690 -14.48763 -14.23338 -13.80192 -13.43227 -12.91952 -12.74012 -12.59701 -12.44180 -12.24160 -11.94177 -11.78510 -11.47653 -11.25597 -11.05683 -11.02451 -10.91919 -10.38066 -10.25099 -9.91507 -9.56107 -9.47214 -9.25246 -9.14172 -8.67789 -8.03846 -7.94813 -7.64599 -7.35081 -6.86805 -4.57545 1.60259 1.80322 2.68395 2.78482 2.97617 3.01522 3.21740 3.80862 4.01004 4.23856 4.30128 4.63330 4.94073 5.30144 5.35518 5.45194 5.50044 5.54634 5.59368 5.62654 5.68282 5.75444 5.82839 5.83165 5.95657 6.05285 6.19785 6.24874 6.32562 6.40690 6.47165 6.58204 6.70698 6.86751 6.89482 7.03879 7.12499 7.28777 7.32581 7.45739 7.50943 7.77290 7.91643 8.07929 8.40393 8.50717 8.68935 8.75321 9.58966 10.01850 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.009206 B = 0.008309 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3040.903221 B = 3369.028293 C = 3960.455499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.085 3.915 3 Si 0.898 3.102 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.412 4.412 8 H 0.072 0.928 9 C 0.164 3.836 10 C -0.206 4.206 11 C 0.079 3.921 12 N -0.579 5.579 13 C 0.124 3.876 14 C -0.223 4.223 15 C -0.008 4.008 16 C -0.079 4.079 17 C -0.189 4.189 18 C 0.088 3.912 19 N -0.523 5.523 20 C 0.310 3.690 21 N -0.441 5.441 22 C 0.035 3.965 23 C 0.068 3.932 24 O -0.391 6.391 25 C 0.063 3.937 26 C 0.036 3.964 27 H 0.282 0.718 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.143 0.857 34 H 0.038 0.962 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.426 -1.570 -4.636 6.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.442 4.442 8 H 0.091 0.909 9 C 0.156 3.844 10 C -0.228 4.228 11 C -0.068 4.068 12 N -0.294 5.294 13 C -0.034 4.034 14 C -0.230 4.230 15 C -0.012 4.012 16 C -0.105 4.105 17 C -0.209 4.209 18 C -0.070 4.070 19 N -0.236 5.236 20 C 0.079 3.921 21 N -0.161 5.161 22 C -0.092 4.092 23 C -0.010 4.010 24 O -0.309 6.309 25 C -0.014 4.014 26 C -0.092 4.092 27 H 0.093 0.907 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.147 0.853 32 H 0.142 0.858 33 H 0.160 0.840 34 H 0.057 0.943 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.343 -1.517 -5.036 6.232 hybrid contribution 1.495 0.964 0.291 1.803 sum 4.838 -0.553 -4.745 6.799 Atomic orbital electron populations 1.69732 1.07490 1.29396 1.33371 1.25858 0.94636 1.00991 0.92069 0.86462 0.80837 0.80942 0.79572 1.19177 1.19928 1.18481 1.19258 0.96312 0.90188 1.38457 0.90940 1.17527 0.89675 0.90901 0.86323 1.21873 1.00200 0.97975 1.02748 1.21661 0.98101 0.89008 0.98024 1.67292 1.16247 1.29446 1.16414 1.21994 0.91629 0.95271 0.94518 1.19162 1.00318 0.95383 1.08109 1.19235 0.94339 0.95620 0.92049 1.21707 0.91813 0.97672 0.99272 1.21848 0.99410 1.03382 0.96282 1.22268 0.95199 0.94919 0.94623 1.67557 1.01283 1.19039 1.35764 1.19917 0.89105 0.92549 0.90484 1.59516 1.10078 1.10193 1.36310 1.22709 0.93668 0.95055 0.97772 1.22614 0.95023 0.89232 0.94082 1.87885 1.64008 1.38802 1.40229 1.22679 0.89033 0.91016 0.98655 1.22542 0.97463 0.94278 0.94941 0.90676 0.85884 0.86737 0.86785 0.85330 0.85779 0.83982 0.94337 0.89336 0.91306 0.88937 0.91621 0.89163 0.90105 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.02 10.96 55.56 0.61 -17.41 16 2 C 0.09 1.94 5.24 -17.31 -0.09 1.85 16 3 Si 0.90 17.62 29.58 -169.99 -5.03 12.59 16 4 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.41 -9.87 7.54 -37.88 -0.29 -10.16 16 8 H 0.07 1.80 7.33 -52.49 -0.38 1.41 16 9 C 0.16 3.94 5.41 -106.25 -0.57 3.37 16 10 C -0.21 -4.95 8.70 -39.13 -0.34 -5.29 16 11 C 0.08 1.82 11.08 -18.02 -0.20 1.62 16 12 N -0.58 -13.34 10.32 -13.34 -0.14 -13.48 16 13 C 0.12 2.71 10.89 -17.19 -0.19 2.52 16 14 C -0.22 -4.95 4.33 -104.05 -0.45 -5.40 16 15 C -0.01 -0.15 4.46 -104.53 -0.47 -0.62 16 16 C -0.08 -1.36 9.92 -38.89 -0.39 -1.75 16 17 C -0.19 -2.82 10.09 -39.48 -0.40 -3.21 16 18 C 0.09 1.38 11.17 -17.46 -0.20 1.18 16 19 N -0.52 -9.73 8.98 -12.11 -0.11 -9.84 16 20 C 0.31 6.18 5.25 -154.97 -0.81 5.36 16 21 N -0.44 -8.73 3.31 -172.56 -0.57 -9.30 16 22 C 0.03 0.63 5.45 -3.71 -0.02 0.61 16 23 C 0.07 1.16 7.01 37.21 0.26 1.43 16 24 O -0.39 -6.96 10.83 -35.23 -0.38 -7.34 16 25 C 0.06 1.09 7.01 37.21 0.26 1.35 16 26 C 0.04 0.65 5.06 -3.71 -0.02 0.63 16 27 H 0.28 6.06 8.29 -40.82 -0.34 5.72 16 28 H 0.12 3.03 6.33 -52.49 -0.33 2.70 16 29 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 30 H 0.11 2.24 8.06 -52.49 -0.42 1.81 16 31 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 32 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.14 1.77 8.06 -52.48 -0.42 1.34 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.70 7.53 -51.93 -0.39 1.31 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 41 H 0.05 0.94 7.69 -51.93 -0.40 0.54 16 LS Contribution 340.18 15.07 5.13 5.13 Total: -1.00 -26.60 340.18 -9.69 -36.29 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -5.29 Total: 9.88 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -3.90 Total: -6.51 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.21 Total: -50.03 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.38 Total: -7.34 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -26.60 -9.69 -36.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243462568.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.528 kcal (2) G-P(sol) polarization free energy of solvation -26.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds