Wall clock time and date at job start Fri Apr 10 2020 22:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30698 * 1 3 3 Si 1.86803 * 119.99925 * 2 1 4 4 H 1.48498 * 109.47387 * 270.00257 * 3 2 1 5 5 H 1.48505 * 109.46857 * 30.00742 * 3 2 1 6 6 H 1.48506 * 109.46891 * 150.00152 * 3 2 1 7 7 C 1.40159 * 120.00415 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00408 * 166.38123 * 7 2 1 9 9 C 1.40836 * 119.99413 * 346.38061 * 7 2 1 10 10 C 1.41148 * 121.11809 * 332.79874 * 9 7 2 11 11 C 1.36424 * 119.11965 * 179.97438 * 10 9 7 12 12 N 1.32253 * 121.54494 * 359.97438 * 11 10 9 13 13 C 1.31621 * 122.51559 * 0.02562 * 12 11 10 14 14 C 1.39454 * 120.64298 * 0.25661 * 13 12 11 15 15 C 1.47620 * 120.79730 * 179.72447 * 14 13 12 16 16 C 1.39928 * 120.60588 * 293.50541 * 15 14 13 17 17 C 1.38407 * 118.36504 * 179.80300 * 16 15 14 18 18 C 1.38348 * 119.50193 * 0.42882 * 17 16 15 19 19 N 1.31940 * 121.21819 * 359.81508 * 18 17 16 20 20 C 1.32328 * 121.77936 * 359.97243 * 19 18 17 21 21 N 1.38531 * 119.83001 * 180.02562 * 20 19 18 22 22 C 1.47011 * 110.99944 * 95.46832 * 21 20 19 23 23 C 1.53099 * 109.25901 * 177.61402 * 22 21 20 24 24 O 1.43011 * 109.26009 * 56.84549 * 23 22 21 25 25 C 1.43016 * 113.74067 * 301.33581 * 24 23 22 26 26 C 1.47017 * 110.99405 * 331.83566 * 21 20 19 27 27 H 0.97001 * 120.00488 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.44226 * 359.95689 * 10 9 7 29 29 H 1.08008 * 119.22860 * 180.02562 * 11 10 9 30 30 H 1.08000 * 119.67584 * 179.97438 * 13 12 11 31 31 H 1.07993 * 120.81647 * 359.97438 * 16 15 14 32 32 H 1.07996 * 120.24526 * 180.19804 * 17 16 15 33 33 H 1.08007 * 119.39304 * 179.78543 * 18 17 16 34 34 H 1.09004 * 109.50961 * 297.54477 * 22 21 20 35 35 H 1.09003 * 109.50717 * 57.67686 * 22 21 20 36 36 H 1.09006 * 109.50037 * 296.91266 * 23 22 21 37 37 H 1.08994 * 109.54366 * 176.80944 * 23 22 21 38 38 H 1.09001 * 109.50766 * 298.73042 * 25 24 23 39 39 H 1.08998 * 109.54435 * 178.62658 * 25 24 23 40 40 H 1.09000 * 109.50813 * 302.32422 * 26 21 20 41 41 H 1.09004 * 109.50582 * 62.45570 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.4884 2.0465 -1.4000 5 1 1.4384 2.6526 0.7002 6 1 3.5386 1.4402 0.7000 7 6 2.0079 -1.2138 -0.0005 8 1 3.0650 -1.2268 -0.2208 9 6 1.3334 -2.4164 0.2861 10 6 0.1790 -2.4296 1.0982 11 6 -0.4426 -3.6178 1.3492 12 7 0.0109 -4.7551 0.8493 13 6 1.0809 -4.8152 0.0851 14 6 1.7955 -3.6597 -0.2294 15 6 2.9995 -3.7240 -1.0812 16 6 4.1548 -4.3745 -0.6338 17 6 5.2555 -4.4105 -1.4721 18 6 5.1876 -3.8013 -2.7123 19 7 4.0904 -3.1884 -3.1140 20 6 3.0083 -3.1277 -2.3547 21 7 1.8779 -2.4740 -2.8171 22 6 0.9353 -3.4211 -3.4302 23 6 -0.3218 -2.6675 -3.8725 24 8 0.0490 -1.6163 -4.7684 25 6 0.9659 -0.6751 -4.2036 26 6 2.2361 -1.4085 -3.7647 27 1 -0.4851 0.8400 0.0004 28 1 -0.2070 -1.5113 1.5157 29 1 -1.3263 -3.6299 1.9701 30 1 1.4112 -5.7693 -0.2984 31 1 4.1858 -4.8395 0.3404 32 1 6.1619 -4.9072 -1.1588 33 1 6.0488 -3.8274 -3.3637 34 1 1.4022 -3.8900 -4.2964 35 1 0.6640 -4.1866 -2.7032 36 1 -0.8181 -2.2436 -2.9994 37 1 -0.9998 -3.3548 -4.3785 38 1 0.5071 -0.1932 -3.3403 39 1 1.2199 0.0787 -4.9488 40 1 2.9142 -0.7048 -3.2818 41 1 2.7238 -1.8453 -4.6362 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243462568.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:15 Heat of formation + Delta-G solvation = 21.009991 kcal Electronic energy + Delta-G solvation = -26931.422502 eV Core-core repulsion = 23389.641030 eV Total energy + Delta-G solvation = -3541.781472 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.68599 -40.06775 -39.63358 -36.59165 -35.91547 -34.27747 -32.36262 -32.14865 -31.75143 -30.14417 -28.03661 -27.42891 -25.31719 -24.54295 -23.61172 -23.17094 -21.96595 -21.38128 -19.37842 -18.58735 -17.56656 -17.34721 -17.01463 -16.88902 -16.33617 -16.21058 -16.13602 -16.00095 -15.86146 -15.20997 -14.84259 -14.44892 -14.27322 -14.17856 -13.99108 -13.85984 -13.34895 -13.29815 -13.09826 -12.87594 -12.68622 -12.48893 -12.37713 -12.00531 -11.72601 -11.61541 -11.21724 -10.94317 -10.67189 -10.55203 -10.11967 -9.76582 -9.72604 -9.31563 -8.86104 -8.58237 -6.38141 0.23109 0.44196 1.00440 1.06213 1.36036 1.44638 1.54664 2.16968 2.61576 2.85790 2.86601 2.94875 3.63624 3.78249 3.90357 4.01978 4.05824 4.13225 4.13496 4.18729 4.25303 4.36561 4.41436 4.45941 4.55307 4.58294 4.63746 4.77906 4.91152 4.96604 5.00159 5.05578 5.09340 5.24921 5.32600 5.41741 5.57459 5.64831 5.75787 5.87795 5.99516 6.08705 6.29563 6.46744 6.61610 6.90338 6.95648 7.15866 7.80324 8.30615 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.009206 B = 0.008309 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3040.903221 B = 3369.028293 C = 3960.455499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.057 3.943 3 Si 0.952 3.048 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.424 4.424 8 H 0.058 0.942 9 C 0.143 3.857 10 C -0.227 4.227 11 C 0.075 3.925 12 N -0.590 5.590 13 C 0.115 3.885 14 C -0.212 4.212 15 C -0.042 4.042 16 C -0.082 4.082 17 C -0.174 4.174 18 C 0.090 3.910 19 N -0.539 5.539 20 C 0.295 3.705 21 N -0.460 5.460 22 C 0.042 3.958 23 C 0.073 3.927 24 O -0.392 6.392 25 C 0.067 3.933 26 C 0.044 3.956 27 H 0.288 0.712 28 H 0.111 0.889 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.167 0.833 33 H 0.181 0.819 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.122 0.878 38 H 0.041 0.959 39 H 0.121 0.879 40 H 0.068 0.932 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.310 -1.958 -5.703 8.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.162 4.162 3 Si 0.774 3.226 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.454 4.454 8 H 0.076 0.924 9 C 0.135 3.865 10 C -0.249 4.249 11 C -0.073 4.073 12 N -0.305 5.305 13 C -0.042 4.042 14 C -0.218 4.218 15 C -0.047 4.047 16 C -0.108 4.108 17 C -0.194 4.194 18 C -0.068 4.068 19 N -0.253 5.253 20 C 0.065 3.935 21 N -0.180 5.180 22 C -0.085 4.085 23 C -0.004 4.004 24 O -0.310 6.310 25 C -0.010 4.010 26 C -0.084 4.084 27 H 0.099 0.901 28 H 0.129 0.871 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.157 0.843 32 H 0.185 0.815 33 H 0.198 0.802 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.140 0.860 38 H 0.059 0.941 39 H 0.139 0.861 40 H 0.086 0.914 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.223 -1.919 -6.109 8.264 hybrid contribution 1.018 0.980 0.592 1.532 sum 6.241 -0.939 -5.518 8.383 Atomic orbital electron populations 1.69770 1.08459 1.30358 1.33658 1.26406 0.95177 1.03187 0.91425 0.85640 0.79472 0.77795 0.79676 1.18620 1.18962 1.18963 1.19173 0.95583 0.91001 1.39678 0.92398 1.17807 0.90038 0.91981 0.86679 1.21841 1.01190 0.97951 1.03926 1.21922 0.98571 0.88693 0.98084 1.67340 1.16804 1.29360 1.16954 1.22334 0.91312 0.96217 0.94331 1.19336 1.00744 0.94604 1.07131 1.19274 0.94772 0.98230 0.92417 1.21940 0.91711 0.96942 1.00167 1.22245 0.99866 1.02057 0.95205 1.23012 0.95214 0.93158 0.95445 1.67601 1.01753 1.19916 1.35985 1.19922 0.89653 0.93147 0.90736 1.59501 1.10743 1.10855 1.36948 1.22628 0.93818 0.94686 0.97357 1.22616 0.94930 0.89385 0.93446 1.87884 1.64064 1.38898 1.40174 1.22717 0.88281 0.91250 0.98716 1.22460 0.97598 0.93805 0.94554 0.90109 0.87143 0.84877 0.84720 0.84290 0.81515 0.80200 0.93763 0.90810 0.94132 0.85979 0.94052 0.86097 0.91364 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.11 10.96 21.86 0.24 -37.87 16 2 C 0.06 2.64 5.24 85.33 0.45 3.08 16 3 Si 0.95 36.37 29.58 68.60 2.03 38.40 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 5 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 6 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.42 -20.89 7.54 23.37 0.18 -20.71 16 8 H 0.06 2.95 7.33 -2.91 -0.02 2.93 16 9 C 0.14 7.08 5.41 -20.92 -0.11 6.96 16 10 C -0.23 -11.27 8.70 22.56 0.20 -11.07 16 11 C 0.08 3.51 11.08 84.21 0.93 4.45 16 12 N -0.59 -27.31 10.32 -196.12 -2.02 -29.33 16 13 C 0.11 5.03 10.89 85.02 0.93 5.95 16 14 C -0.21 -9.52 4.33 -19.49 -0.08 -9.61 16 15 C -0.04 -1.68 4.46 -19.81 -0.09 -1.77 16 16 C -0.08 -2.67 9.92 22.72 0.23 -2.45 16 17 C -0.17 -4.54 10.09 22.34 0.23 -4.32 16 18 C 0.09 2.51 11.17 84.70 0.95 3.46 16 19 N -0.54 -19.12 8.98 -192.24 -1.73 -20.85 16 20 C 0.29 11.63 5.25 133.61 0.70 12.33 16 21 N -0.46 -18.37 3.31 -699.87 -2.32 -20.69 16 22 C 0.04 1.53 5.45 86.32 0.47 2.00 16 23 C 0.07 2.53 7.01 72.02 0.50 3.03 16 24 O -0.39 -13.69 10.83 -148.98 -1.61 -15.30 16 25 C 0.07 2.29 7.01 72.02 0.50 2.80 16 26 C 0.04 1.59 5.06 86.31 0.44 2.03 16 27 H 0.29 12.63 8.29 -92.71 -0.77 11.86 16 28 H 0.11 5.68 6.33 -2.91 -0.02 5.66 16 29 H 0.13 5.52 8.06 -2.91 -0.02 5.50 16 30 H 0.14 5.21 8.06 -2.91 -0.02 5.18 16 31 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 32 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 33 H 0.18 3.60 8.06 -2.91 -0.02 3.57 16 34 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.07 2.89 7.53 -2.39 -0.02 2.87 16 36 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 40 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.05 1.94 7.69 -2.38 -0.02 1.92 16 Total: -1.00 -58.40 340.18 2.04 -56.36 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: 1.04 Total: 33.12 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 6.41 Total: -3.84 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -5.83 Total: -108.74 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -1.61 Total: -15.30 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Total: -58.40 2.04 -56.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243462568.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.370 kcal (2) G-P(sol) polarization free energy of solvation -58.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds