Wall clock time and date at job start Fri Apr 10 2020 22:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86802 * 120.00004 * 2 1 4 4 H 1.48502 * 109.46868 * 239.99676 * 3 2 1 5 5 H 1.48494 * 109.46862 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47010 * 120.00029 * 3 2 1 7 7 C 1.39933 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99521 * 165.48546 * 7 2 1 9 9 C 1.41432 * 120.00380 * 345.49301 * 7 2 1 10 10 C 1.40821 * 120.60487 * 150.89469 * 9 7 2 11 11 N 1.31502 * 120.67080 * 180.28487 * 10 9 7 12 12 C 1.31930 * 122.12730 * 359.73905 * 11 10 9 13 13 C 1.39719 * 121.14670 * 0.02562 * 12 11 10 14 14 C 1.48310 * 120.41794 * 179.97438 * 13 12 11 15 15 C 1.39492 * 120.57232 * 130.02093 * 14 13 12 16 16 C 1.38592 * 118.39603 * 180.02562 * 15 14 13 17 17 C 1.38173 * 119.45277 * 359.97438 * 16 15 14 18 18 N 1.31960 * 121.12083 * 0.02562 * 17 16 15 19 19 C 1.32326 * 121.74734 * 359.70116 * 18 17 16 20 20 N 1.38790 * 119.78802 * 180.29455 * 19 18 17 21 21 C 1.47010 * 111.00254 * 69.48155 * 20 19 18 22 22 C 1.53105 * 109.25752 * 177.60736 * 21 20 19 23 23 O 1.43010 * 109.25770 * 56.85134 * 22 21 20 24 24 C 1.43024 * 113.73681 * 301.32596 * 23 22 21 25 25 C 1.47013 * 111.00041 * 305.84248 * 20 19 18 26 26 C 1.39214 * 119.16892 * 359.97438 * 13 12 11 27 27 H 0.96996 * 120.00100 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.66039 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.42735 * 180.02562 * 12 11 10 30 30 H 1.07996 * 120.79948 * 359.97438 * 15 14 13 31 31 H 1.08003 * 120.27216 * 180.02562 * 16 15 14 32 32 H 1.07998 * 119.43697 * 180.02562 * 17 16 15 33 33 H 1.08994 * 109.50951 * 297.54260 * 21 20 19 34 34 H 1.09009 * 109.50754 * 57.67727 * 21 20 19 35 35 H 1.08998 * 109.50527 * 296.91605 * 22 21 20 36 36 H 1.08996 * 109.54181 * 176.80507 * 22 21 20 37 37 H 1.08993 * 109.50872 * 298.73979 * 24 23 22 38 38 H 1.09000 * 109.53961 * 178.62468 * 24 23 22 39 39 H 1.09003 * 109.50898 * 302.33339 * 25 20 19 40 40 H 1.09011 * 109.50204 * 62.46165 * 25 20 19 41 41 H 1.07999 * 120.95707 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0622 -1.2269 -0.2339 9 6 1.3346 -2.4171 0.3079 10 6 1.7679 -3.6401 -0.2395 11 7 1.1395 -4.7606 0.0410 12 6 0.0909 -4.7957 0.8409 13 6 -0.4058 -3.6316 1.4327 14 6 -1.5861 -3.6896 2.3289 15 6 -1.5536 -3.0838 3.5850 16 6 -2.6817 -3.1662 4.3858 17 6 -3.7962 -3.8388 3.9225 18 7 -3.8047 -4.4046 2.7303 19 6 -2.7553 -4.3497 1.9261 20 7 -2.8108 -4.9541 0.6779 21 6 -3.7298 -4.2343 -0.2157 22 6 -3.7152 -4.8974 -1.5956 23 8 -4.0630 -6.2778 -1.4593 24 6 -3.1882 -7.0094 -0.5961 25 6 -3.1974 -6.3677 0.7938 26 6 0.2210 -2.4165 1.1706 27 1 -0.4850 0.8400 -0.0004 28 1 2.6225 -3.6572 -0.8995 29 1 -0.3919 -5.7407 1.0417 30 1 -0.6704 -2.5639 3.9255 31 1 -2.6899 -2.7078 5.3637 32 1 -4.6753 -3.9025 4.5466 33 1 -4.7390 -4.2700 0.1946 34 1 -3.4099 -3.1962 -0.3073 35 1 -2.7185 -4.8142 -2.0288 36 1 -4.4370 -4.4027 -2.2455 37 1 -2.1762 -6.9876 -1.0003 38 1 -3.5286 -8.0423 -0.5224 39 1 -2.4890 -6.8871 1.4392 40 1 -4.1982 -6.4375 1.2203 41 1 -0.1390 -1.4991 1.6122 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243463816.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:19 Heat of formation + Delta-G solvation = 29.741162 kcal Electronic energy + Delta-G solvation = -25882.432099 eV Core-core repulsion = 22341.029239 eV Total energy + Delta-G solvation = -3541.402860 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.54172 -38.80495 -38.10522 -35.45382 -34.05277 -33.05763 -31.04394 -30.95664 -30.35545 -28.72908 -26.55490 -25.60802 -23.89612 -23.61015 -22.49501 -21.48961 -20.54257 -20.19145 -17.58377 -17.31563 -16.25252 -15.99858 -15.78870 -15.44442 -15.16487 -15.01447 -14.86528 -14.76245 -14.26554 -13.96880 -13.56107 -13.28539 -12.99661 -12.71807 -12.30921 -12.21336 -12.02758 -11.57400 -11.50909 -11.35629 -11.29454 -11.20243 -11.06327 -10.65370 -10.51173 -10.07085 -9.78564 -9.60668 -9.38989 -9.30785 -8.89487 -8.30320 -8.17484 -7.86918 -7.41965 -6.85113 -4.51518 1.23940 1.48915 2.64050 2.87072 3.00328 3.02880 3.17239 3.72854 3.84705 3.99340 4.01357 4.57922 4.67452 5.05316 5.11009 5.18037 5.28329 5.31879 5.32830 5.37631 5.45527 5.56347 5.61947 5.68423 5.78558 5.91323 5.96865 6.04184 6.10996 6.14336 6.32223 6.41434 6.52741 6.69426 6.75414 6.94501 6.98471 7.07007 7.16090 7.25832 7.53330 7.63825 7.80905 7.87472 8.15639 8.37922 8.65545 8.68713 9.59691 10.08644 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.004969 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.775294 B = 5633.638706 C = 6427.324991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.063 3.937 10 C -0.009 4.009 11 N -0.476 5.476 12 C 0.021 3.979 13 C -0.085 4.085 14 C -0.024 4.024 15 C -0.070 4.070 16 C -0.173 4.173 17 C 0.089 3.911 18 N -0.512 5.512 19 C 0.289 3.711 20 N -0.466 5.466 21 C 0.029 3.971 22 C 0.067 3.933 23 O -0.388 6.388 24 C 0.064 3.936 25 C 0.026 3.974 26 C -0.108 4.108 27 H 0.282 0.718 28 H 0.126 0.874 29 H 0.119 0.881 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.148 0.852 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.090 -4.505 4.598 9.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.059 3.941 10 C -0.169 4.169 11 N -0.183 5.183 12 C -0.138 4.138 13 C -0.088 4.088 14 C -0.028 4.028 15 C -0.097 4.097 16 C -0.193 4.193 17 C -0.069 4.069 18 N -0.224 5.224 19 C 0.061 3.939 20 N -0.190 5.190 21 C -0.098 4.098 22 C -0.010 4.010 23 O -0.306 6.306 24 C -0.013 4.013 25 C -0.102 4.102 26 C -0.134 4.134 27 H 0.093 0.907 28 H 0.143 0.857 29 H 0.137 0.863 30 H 0.155 0.845 31 H 0.149 0.851 32 H 0.166 0.834 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.447 -5.634 3.605 10.009 hybrid contribution 0.131 2.362 1.234 2.668 sum -7.316 -3.272 4.839 9.361 Atomic orbital electron populations 1.69769 1.07520 1.29485 1.35615 1.25887 0.94776 1.01287 0.92204 0.86331 0.80077 0.80091 0.80064 1.18882 1.20364 1.18811 1.19438 0.97065 0.90471 1.41943 0.90056 1.18397 0.92094 0.93736 0.89908 1.22604 1.02376 0.88556 1.03382 1.67000 1.07611 1.30695 1.13018 1.21650 0.96078 0.95623 1.00400 1.19125 0.94435 0.95709 0.99496 1.19632 0.93814 0.95536 0.93835 1.21723 0.98558 0.96633 0.92738 1.22004 0.94482 1.01624 1.01160 1.22353 0.97684 0.94820 0.92073 1.67598 1.29477 1.19695 1.05581 1.19716 0.88899 0.95243 0.90064 1.60171 1.49810 1.02098 1.06897 1.22749 0.94607 0.99075 0.93392 1.22652 1.01653 0.81441 0.95304 1.87931 1.54014 1.21484 1.67192 1.22665 0.95032 0.95022 0.88541 1.22741 1.00744 0.88188 0.98479 1.21638 0.97849 0.95173 0.98745 0.90736 0.85696 0.86338 0.84546 0.85063 0.83437 0.93202 0.89449 0.91693 0.88476 0.91744 0.88597 0.90024 0.92683 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.69 11.13 55.55 0.62 -19.08 16 2 C 0.08 1.81 5.20 -17.34 -0.09 1.72 16 3 Si 0.91 17.85 29.58 -169.99 -5.03 12.83 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.46 -11.47 9.07 -37.73 -0.34 -11.82 16 8 H 0.08 1.94 7.89 -52.48 -0.41 1.53 16 9 C 0.06 1.59 5.53 -106.71 -0.59 1.00 16 10 C -0.01 -0.22 10.96 -16.72 -0.18 -0.40 16 11 N -0.48 -11.37 10.32 -12.27 -0.13 -11.50 16 12 C 0.02 0.46 9.92 -16.96 -0.17 0.29 16 13 C -0.08 -1.87 5.27 -104.84 -0.55 -2.42 16 14 C -0.02 -0.46 5.51 -104.56 -0.58 -1.04 16 15 C -0.07 -1.17 9.68 -38.98 -0.38 -1.54 16 16 C -0.17 -2.36 10.09 -39.47 -0.40 -2.75 16 17 C 0.09 1.25 11.16 -17.52 -0.20 1.06 16 18 N -0.51 -8.55 9.59 -12.21 -0.12 -8.66 16 19 C 0.29 5.23 5.30 -154.89 -0.82 4.41 16 20 N -0.47 -8.08 2.93 -172.63 -0.51 -8.59 16 21 C 0.03 0.47 5.54 -3.71 -0.02 0.45 16 22 C 0.07 0.99 7.01 37.21 0.26 1.25 16 23 O -0.39 -5.90 10.83 -35.23 -0.38 -6.28 16 24 C 0.06 0.88 7.01 37.21 0.26 1.14 16 25 C 0.03 0.39 5.35 -3.71 -0.02 0.37 16 26 C -0.11 -2.62 8.28 -38.22 -0.32 -2.94 16 27 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 28 H 0.13 2.84 8.06 -52.49 -0.42 2.42 16 29 H 0.12 2.48 7.59 -52.49 -0.40 2.08 16 30 H 0.14 2.15 8.06 -52.49 -0.42 1.72 16 31 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 34 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 0.84 7.82 -51.92 -0.41 0.44 16 41 H 0.12 3.03 6.51 -52.49 -0.34 2.69 16 LS Contribution 343.85 15.07 5.18 5.18 Total: -1.00 -28.03 343.85 -9.83 -37.86 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -5.34 Total: 9.46 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -4.13 Total: -11.22 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.13 Total: -47.83 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.38 Total: -6.28 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.03 -9.83 -37.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243463816.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.601 kcal (2) G-P(sol) polarization free energy of solvation -28.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds