Wall clock time and date at job start Fri Apr 10 2020 22:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86802 * 120.00004 * 2 1 4 4 H 1.48502 * 109.46868 * 239.99676 * 3 2 1 5 5 H 1.48494 * 109.46862 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47010 * 120.00029 * 3 2 1 7 7 C 1.39933 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99521 * 165.48546 * 7 2 1 9 9 C 1.41432 * 120.00380 * 345.49301 * 7 2 1 10 10 C 1.40821 * 120.60487 * 150.89469 * 9 7 2 11 11 N 1.31502 * 120.67080 * 180.28487 * 10 9 7 12 12 C 1.31930 * 122.12730 * 359.73905 * 11 10 9 13 13 C 1.39719 * 121.14670 * 0.02562 * 12 11 10 14 14 C 1.48310 * 120.41794 * 179.97438 * 13 12 11 15 15 C 1.39492 * 120.57232 * 130.02093 * 14 13 12 16 16 C 1.38592 * 118.39603 * 180.02562 * 15 14 13 17 17 C 1.38173 * 119.45277 * 359.97438 * 16 15 14 18 18 N 1.31960 * 121.12083 * 0.02562 * 17 16 15 19 19 C 1.32326 * 121.74734 * 359.70116 * 18 17 16 20 20 N 1.38790 * 119.78802 * 180.29455 * 19 18 17 21 21 C 1.47010 * 111.00254 * 69.48155 * 20 19 18 22 22 C 1.53105 * 109.25752 * 177.60736 * 21 20 19 23 23 O 1.43010 * 109.25770 * 56.85134 * 22 21 20 24 24 C 1.43024 * 113.73681 * 301.32596 * 23 22 21 25 25 C 1.47013 * 111.00041 * 305.84248 * 20 19 18 26 26 C 1.39214 * 119.16892 * 359.97438 * 13 12 11 27 27 H 0.96996 * 120.00100 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.66039 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.42735 * 180.02562 * 12 11 10 30 30 H 1.07996 * 120.79948 * 359.97438 * 15 14 13 31 31 H 1.08003 * 120.27216 * 180.02562 * 16 15 14 32 32 H 1.07998 * 119.43697 * 180.02562 * 17 16 15 33 33 H 1.08994 * 109.50951 * 297.54260 * 21 20 19 34 34 H 1.09009 * 109.50754 * 57.67727 * 21 20 19 35 35 H 1.08998 * 109.50527 * 296.91605 * 22 21 20 36 36 H 1.08996 * 109.54181 * 176.80507 * 22 21 20 37 37 H 1.08993 * 109.50872 * 298.73979 * 24 23 22 38 38 H 1.09000 * 109.53961 * 178.62468 * 24 23 22 39 39 H 1.09003 * 109.50898 * 302.33339 * 25 20 19 40 40 H 1.09011 * 109.50204 * 62.46165 * 25 20 19 41 41 H 1.07999 * 120.95707 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0622 -1.2269 -0.2339 9 6 1.3346 -2.4171 0.3079 10 6 1.7679 -3.6401 -0.2395 11 7 1.1395 -4.7606 0.0410 12 6 0.0909 -4.7957 0.8409 13 6 -0.4058 -3.6316 1.4327 14 6 -1.5861 -3.6896 2.3289 15 6 -1.5536 -3.0838 3.5850 16 6 -2.6817 -3.1662 4.3858 17 6 -3.7962 -3.8388 3.9225 18 7 -3.8047 -4.4046 2.7303 19 6 -2.7553 -4.3497 1.9261 20 7 -2.8108 -4.9541 0.6779 21 6 -3.7298 -4.2343 -0.2157 22 6 -3.7152 -4.8974 -1.5956 23 8 -4.0630 -6.2778 -1.4593 24 6 -3.1882 -7.0094 -0.5961 25 6 -3.1974 -6.3677 0.7938 26 6 0.2210 -2.4165 1.1706 27 1 -0.4850 0.8400 -0.0004 28 1 2.6225 -3.6572 -0.8995 29 1 -0.3919 -5.7407 1.0417 30 1 -0.6704 -2.5639 3.9255 31 1 -2.6899 -2.7078 5.3637 32 1 -4.6753 -3.9025 4.5466 33 1 -4.7390 -4.2700 0.1946 34 1 -3.4099 -3.1962 -0.3073 35 1 -2.7185 -4.8142 -2.0288 36 1 -4.4370 -4.4027 -2.2455 37 1 -2.1762 -6.9876 -1.0003 38 1 -3.5286 -8.0423 -0.5224 39 1 -2.4890 -6.8871 1.4392 40 1 -4.1982 -6.4375 1.2203 41 1 -0.1390 -1.4991 1.6122 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243463816.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:18 Heat of formation + Delta-G solvation = 14.200592 kcal Electronic energy + Delta-G solvation = -25883.105988 eV Core-core repulsion = 22341.029239 eV Total energy + Delta-G solvation = -3542.076750 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.83858 -40.15743 -39.75544 -36.68821 -35.88176 -34.54894 -32.28886 -32.27435 -32.15544 -30.24778 -27.81357 -27.45925 -25.16182 -25.00195 -23.88889 -23.20555 -22.15198 -21.44295 -19.24311 -18.67718 -17.58912 -17.48250 -17.20378 -17.04208 -16.64793 -16.39166 -16.17324 -16.05376 -15.87177 -15.26228 -14.85279 -14.63078 -14.49879 -14.11108 -14.00959 -13.59118 -13.41710 -13.26600 -13.20889 -12.99534 -12.73607 -12.57462 -12.39928 -12.26284 -11.83547 -11.65267 -11.20890 -11.08183 -10.91400 -10.57727 -10.26295 -10.04156 -9.66486 -9.59392 -9.10956 -8.65410 -6.42684 -0.08203 0.20549 0.91623 1.08847 1.39645 1.50119 1.54102 2.19873 2.48000 2.69725 2.81088 2.86299 3.47946 3.68510 3.83091 3.87544 3.99424 4.01124 4.10895 4.14207 4.17738 4.22350 4.28687 4.35633 4.51053 4.59142 4.62690 4.73628 4.77393 4.80099 4.87930 4.93732 5.01270 5.12940 5.18367 5.31471 5.34543 5.53417 5.74003 5.82107 5.92226 6.03567 6.07708 6.24786 6.50315 6.78958 6.81180 6.92010 7.72589 8.30015 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.004969 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.775294 B = 5633.638706 C = 6427.324991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.039 3.961 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.489 4.489 8 H 0.083 0.917 9 C 0.040 3.960 10 C -0.030 4.030 11 N -0.485 5.485 12 C 0.018 3.982 13 C -0.069 4.069 14 C -0.064 4.064 15 C -0.077 4.077 16 C -0.158 4.158 17 C 0.097 3.903 18 N -0.524 5.524 19 C 0.283 3.717 20 N -0.485 5.485 21 C 0.035 3.965 22 C 0.072 3.928 23 O -0.392 6.392 24 C 0.065 3.935 25 C 0.031 3.969 26 C -0.125 4.125 27 H 0.288 0.712 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.137 0.863 31 H 0.174 0.826 32 H 0.190 0.810 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.121 0.879 37 H 0.053 0.947 38 H 0.128 0.872 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.510 -4.277 6.134 11.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.176 4.176 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.519 4.519 8 H 0.101 0.899 9 C 0.036 3.964 10 C -0.190 4.190 11 N -0.192 5.192 12 C -0.141 4.141 13 C -0.072 4.072 14 C -0.068 4.068 15 C -0.103 4.103 16 C -0.177 4.177 17 C -0.061 4.061 18 N -0.236 5.236 19 C 0.056 3.944 20 N -0.209 5.209 21 C -0.092 4.092 22 C -0.005 4.005 23 O -0.311 6.311 24 C -0.011 4.011 25 C -0.096 4.096 26 C -0.151 4.151 27 H 0.098 0.902 28 H 0.150 0.850 29 H 0.151 0.849 30 H 0.155 0.845 31 H 0.192 0.808 32 H 0.207 0.793 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.139 0.861 37 H 0.071 0.929 38 H 0.146 0.854 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.863 -5.431 5.132 11.593 hybrid contribution 0.442 2.218 0.881 2.427 sum -8.422 -3.213 6.013 10.835 Atomic orbital electron populations 1.69838 1.08935 1.30682 1.35848 1.26708 0.95467 1.04339 0.91104 0.85237 0.78713 0.75561 0.80169 1.18413 1.19496 1.18277 1.19704 0.97408 0.91375 1.43403 0.89864 1.18711 0.92852 0.94382 0.90447 1.22730 1.03210 0.88656 1.04364 1.66989 1.08146 1.30590 1.13468 1.21917 0.95679 0.96422 1.00063 1.19285 0.94665 0.94553 0.98700 1.19615 0.93530 0.98679 0.94971 1.21899 0.99937 0.96145 0.92305 1.22399 0.92783 1.00349 1.02168 1.23142 0.99019 0.92698 0.91273 1.67694 1.28755 1.20520 1.06609 1.19698 0.88937 0.95243 0.90569 1.60147 1.50441 1.03233 1.07076 1.22656 0.94340 0.97982 0.94189 1.22639 1.01456 0.81702 0.94685 1.87927 1.54311 1.21382 1.67465 1.22802 0.94524 0.96311 0.87499 1.22754 1.00618 0.86981 0.99236 1.21570 0.98520 0.95544 0.99475 0.90150 0.84986 0.84949 0.84488 0.80840 0.79322 0.93020 0.91764 0.93513 0.86076 0.92890 0.85415 0.89744 0.92741 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.74 11.13 21.82 0.24 -41.50 16 2 C 0.04 1.88 5.20 85.25 0.44 2.32 16 3 Si 0.98 36.62 29.58 68.60 2.03 38.65 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.27 -9.63 7.11 99.48 0.71 -8.93 16 6 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 7 C -0.49 -25.26 9.07 23.47 0.21 -25.05 16 8 H 0.08 4.10 7.89 -2.91 -0.02 4.08 16 9 C 0.04 2.12 5.53 -21.22 -0.12 2.00 16 10 C -0.03 -1.52 10.96 85.37 0.94 -0.59 16 11 N -0.48 -23.84 10.32 -192.73 -1.99 -25.83 16 12 C 0.02 0.81 9.92 85.04 0.84 1.65 16 13 C -0.07 -3.15 5.27 -20.00 -0.11 -3.25 16 14 C -0.06 -2.45 5.51 -19.82 -0.11 -2.56 16 15 C -0.08 -2.46 9.68 22.66 0.22 -2.24 16 16 C -0.16 -3.77 10.09 22.34 0.23 -3.54 16 17 C 0.10 2.38 11.16 84.66 0.95 3.33 16 18 N -0.52 -16.45 9.59 -192.54 -1.85 -18.29 16 19 C 0.28 10.10 5.30 133.41 0.71 10.81 16 20 N -0.49 -16.82 2.93 -700.08 -2.05 -18.87 16 21 C 0.04 1.17 5.54 86.32 0.48 1.65 16 22 C 0.07 2.14 7.01 72.02 0.50 2.65 16 23 O -0.39 -11.52 10.83 -148.98 -1.61 -13.13 16 24 C 0.07 1.72 7.01 72.01 0.50 2.22 16 25 C 0.03 0.90 5.35 86.31 0.46 1.36 16 26 C -0.12 -6.31 8.28 23.15 0.19 -6.12 16 27 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 28 H 0.13 6.29 8.06 -2.91 -0.02 6.26 16 29 H 0.13 5.61 7.59 -2.91 -0.02 5.59 16 30 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 31 H 0.17 2.68 8.06 -2.91 -0.02 2.65 16 32 H 0.19 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.05 1.67 8.09 -2.39 -0.02 1.65 16 34 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.05 1.58 7.82 -2.38 -0.02 1.57 16 41 H 0.11 5.68 6.51 -2.91 -0.02 5.67 16 Total: -1.00 -62.41 343.85 2.16 -60.25 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: 1.04 Total: 34.08 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 6.34 Total: -15.36 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -5.64 Total: -104.49 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -1.61 Total: -13.13 kcal Atomic # 14 Polarization: 36.62 SS G_CDS: 2.03 Total: 38.65 kcal Total: -62.41 2.16 -60.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243463816.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.454 kcal (2) G-P(sol) polarization free energy of solvation -62.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds