Wall clock time and date at job start Fri Apr 10 2020 22:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86799 * 119.99950 * 2 1 4 4 H 1.48497 * 109.47086 * 239.99596 * 3 2 1 5 5 H 1.48500 * 109.46938 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47189 * 120.00040 * 3 2 1 7 7 C 1.40070 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00145 * 179.97438 * 7 2 1 9 9 C 1.40900 * 120.00089 * 0.02562 * 7 2 1 10 10 C 1.40930 * 119.67607 * 179.97438 * 9 7 2 11 11 C 1.36594 * 119.26940 * 180.02562 * 10 9 7 12 12 C 1.40376 * 118.60619 * 0.02562 * 11 10 9 13 13 C 1.47746 * 120.35670 * 179.97438 * 12 11 10 14 14 C 1.39867 * 120.60384 * 309.99981 * 13 12 11 15 15 C 1.38417 * 118.36781 * 180.02562 * 14 13 12 16 16 C 1.38339 * 119.50181 * 0.28388 * 15 14 13 17 17 N 1.31941 * 121.20180 * 359.41981 * 16 15 14 18 18 C 1.32338 * 121.77145 * 0.58453 * 17 16 15 19 19 N 1.38539 * 119.81861 * 179.72459 * 18 17 16 20 20 C 1.47020 * 110.99682 * 68.49463 * 19 18 17 21 21 C 1.53097 * 109.25460 * 177.60490 * 20 19 18 22 22 O 1.43013 * 109.26054 * 56.85012 * 21 20 19 23 23 C 1.43014 * 113.73651 * 301.32673 * 22 21 20 24 24 C 1.47006 * 111.00384 * 304.85750 * 19 18 17 25 25 C 1.40210 * 119.28833 * 0.24834 * 12 11 10 26 26 N 1.31169 * 120.67055 * 359.47732 * 25 12 11 27 27 H 0.97005 * 120.00360 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.35915 * 0.04218 * 10 9 7 29 29 H 1.08007 * 120.69852 * 180.02562 * 11 10 9 30 30 H 1.08002 * 120.81574 * 0.04873 * 14 13 12 31 31 H 1.08002 * 120.24864 * 179.97438 * 15 14 13 32 32 H 1.07995 * 119.39924 * 179.71912 * 16 15 14 33 33 H 1.09000 * 109.50290 * 297.53726 * 20 19 18 34 34 H 1.09005 * 109.50333 * 57.66913 * 20 19 18 35 35 H 1.08996 * 109.50819 * 296.91226 * 21 20 19 36 36 H 1.09005 * 109.53944 * 176.80440 * 21 20 19 37 37 H 1.09003 * 109.51035 * 298.73803 * 23 22 21 38 38 H 1.08999 * 109.54181 * 178.62842 * 23 22 21 39 39 H 1.09005 * 109.50878 * 302.32725 * 24 19 18 40 40 H 1.08997 * 109.50859 * 62.45716 * 24 19 18 41 41 H 1.08002 * 119.66573 * 179.74316 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0951 1.6964 -1.2124 5 1 1.2762 2.7464 -0.0006 6 1 3.0950 1.6964 1.2125 7 6 2.0076 -1.2130 0.0005 8 1 3.0876 -1.2131 0.0001 9 6 1.3031 -2.4333 0.0005 10 6 2.0147 -3.6498 0.0005 11 6 1.3233 -4.8278 0.0000 12 6 -0.0797 -4.7837 -0.0011 13 6 -0.8661 -6.0345 -0.0022 14 6 -0.5893 -7.0488 -0.9247 15 6 -1.3552 -8.2011 -0.8848 16 6 -2.3666 -8.3147 0.0522 17 7 -2.6083 -7.3485 0.9176 18 6 -1.9066 -6.2266 0.9234 19 7 -2.1988 -5.2360 1.8468 20 6 -1.8511 -5.6664 3.2089 21 6 -2.1335 -4.5231 4.1872 22 8 -3.5054 -4.1349 4.0757 23 6 -3.8784 -3.7093 2.7623 24 6 -3.6136 -4.8443 1.7695 25 6 -0.7269 -3.5399 -0.0069 26 7 -0.0349 -2.4256 -0.0010 27 1 -0.4851 0.8401 0.0004 28 1 3.0947 -3.6504 0.0012 29 1 1.8452 -5.7734 0.0004 30 1 0.2029 -6.9359 -1.6500 31 1 -1.1679 -9.0033 -1.5832 32 1 -2.9661 -9.2125 0.0789 33 1 -2.4514 -6.5346 3.4806 34 1 -0.7934 -5.9272 3.2493 35 1 -1.4942 -3.6733 3.9482 36 1 -1.9310 -4.8561 5.2052 37 1 -3.2897 -2.8358 2.4818 38 1 -4.9379 -3.4538 2.7489 39 1 -3.8427 -4.5050 0.7592 40 1 -4.2421 -5.6994 2.0182 41 1 -1.8061 -3.4989 -0.0119 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243464035.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:23 Heat of formation + Delta-G solvation = 39.934032 kcal Electronic energy + Delta-G solvation = -25746.825840 eV Core-core repulsion = 22205.864976 eV Total energy + Delta-G solvation = -3540.960864 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.41129 -38.70731 -37.97403 -35.37794 -33.99019 -32.46861 -30.99553 -30.80746 -30.53652 -29.00669 -26.67678 -25.63181 -23.81672 -23.03735 -22.45031 -21.49330 -20.54340 -20.12731 -17.57768 -17.39384 -16.26370 -15.94278 -15.81500 -15.47273 -15.00614 -14.93679 -14.79574 -14.25288 -14.06763 -13.98105 -13.50384 -13.17232 -12.81047 -12.64489 -12.33104 -12.18650 -12.10992 -11.70611 -11.31654 -11.24127 -11.14133 -11.12035 -10.97938 -10.58575 -10.40896 -10.08306 -9.74681 -9.60506 -9.34100 -9.22612 -8.71109 -8.24899 -8.19600 -7.60184 -7.35814 -6.50645 -4.60233 1.34910 1.59271 2.72720 3.01923 3.03564 3.07896 3.14084 3.82579 3.84789 4.06375 4.09067 4.66274 4.78044 5.10991 5.18138 5.25833 5.36954 5.40468 5.42725 5.44032 5.57708 5.64146 5.72840 5.83110 5.86574 6.01316 6.02168 6.07703 6.13846 6.20849 6.29187 6.41574 6.53498 6.71858 6.82636 6.87936 7.00260 7.05277 7.31738 7.35271 7.48886 7.67090 7.71450 7.95431 8.11804 8.28975 8.53422 8.83281 10.04562 10.19677 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.013911 B = 0.004837 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.258328 B = 5787.167159 C = 7179.624798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.701 5.701 2 C 0.066 3.934 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.415 4.415 8 H 0.084 0.916 9 C 0.256 3.744 10 C -0.276 4.276 11 C -0.036 4.036 12 C -0.267 4.267 13 C 0.010 3.990 14 C -0.093 4.093 15 C -0.168 4.168 16 C 0.072 3.928 17 N -0.508 5.508 18 C 0.269 3.731 19 N -0.464 5.464 20 C 0.031 3.969 21 C 0.065 3.935 22 O -0.388 6.388 23 C 0.063 3.937 24 C 0.027 3.973 25 C 0.187 3.813 26 N -0.490 5.490 27 H 0.276 0.724 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.144 0.856 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.044 -8.516 1.843 9.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.321 5.321 2 C -0.161 4.161 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.445 4.445 8 H 0.103 0.897 9 C 0.133 3.867 10 C -0.298 4.298 11 C -0.059 4.059 12 C -0.273 4.273 13 C 0.006 3.994 14 C -0.119 4.119 15 C -0.188 4.188 16 C -0.087 4.087 17 N -0.220 5.220 18 C 0.040 3.960 19 N -0.187 5.187 20 C -0.096 4.096 21 C -0.012 4.012 22 O -0.307 6.307 23 C -0.014 4.014 24 C -0.101 4.101 25 C 0.018 3.982 26 N -0.202 5.202 27 H 0.087 0.913 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.161 0.839 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.124 -7.183 2.519 9.176 hybrid contribution 1.263 -0.935 -0.762 1.746 sum -3.861 -8.118 1.757 9.160 Atomic orbital electron populations 1.70123 1.07251 1.28206 1.26555 1.26135 0.94964 1.01254 0.93735 0.86365 0.80147 0.80245 0.80018 1.18834 1.20054 1.18804 1.19661 0.94467 0.89658 1.40706 0.89746 1.18626 0.88639 0.91766 0.87682 1.21348 0.98664 0.93578 1.16225 1.20523 0.92678 0.96524 0.96213 1.18702 0.92481 0.91755 1.24357 1.19554 0.93696 0.94308 0.91863 1.21739 0.99387 0.92920 0.97858 1.21962 0.97585 0.98679 1.00599 1.22256 0.96837 0.96971 0.92593 1.67529 1.28603 1.01716 1.24133 1.19819 0.93994 0.88323 0.93881 1.60040 1.20095 1.34625 1.03961 1.22707 1.01795 0.97472 0.87646 1.22649 0.83212 0.96704 0.98608 1.87920 1.27095 1.85732 1.29906 1.22688 1.00719 0.96119 0.81845 1.22733 0.87884 0.98597 1.00840 1.22567 0.98212 0.87204 0.90204 1.68824 1.06874 1.26191 1.18321 0.91290 0.88420 0.89061 0.85112 0.85565 0.83867 0.93321 0.89980 0.91687 0.88690 0.91445 0.88631 0.89996 0.92867 0.86581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.87 11.44 55.55 0.64 -17.23 16 2 C 0.07 1.61 5.50 -17.33 -0.10 1.51 16 3 Si 0.91 17.77 29.56 -169.99 -5.02 12.74 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.41 -10.61 9.11 -37.89 -0.35 -10.95 16 8 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 9 C 0.26 6.71 6.55 -84.98 -0.56 6.15 16 10 C -0.28 -6.48 9.76 -39.16 -0.38 -6.86 16 11 C -0.04 -0.77 9.62 -39.37 -0.38 -1.15 16 12 C -0.27 -5.73 5.30 -104.47 -0.55 -6.28 16 13 C 0.01 0.19 5.52 -104.52 -0.58 -0.39 16 14 C -0.09 -1.48 9.69 -38.91 -0.38 -1.86 16 15 C -0.17 -2.27 10.09 -39.48 -0.40 -2.67 16 16 C 0.07 1.02 11.17 -17.47 -0.20 0.83 16 17 N -0.51 -8.55 9.58 -12.13 -0.12 -8.66 16 18 C 0.27 4.83 5.30 -154.98 -0.82 4.01 16 19 N -0.46 -8.12 2.94 -172.58 -0.51 -8.63 16 20 C 0.03 0.50 5.53 -3.71 -0.02 0.48 16 21 C 0.07 0.98 7.01 37.21 0.26 1.24 16 22 O -0.39 -6.15 10.83 -35.23 -0.38 -6.54 16 23 C 0.06 0.94 7.01 37.21 0.26 1.20 16 24 C 0.03 0.42 5.30 -3.71 -0.02 0.40 16 25 C 0.19 4.39 9.93 -17.09 -0.17 4.22 16 26 N -0.49 -12.95 7.83 -10.82 -0.08 -13.04 16 27 H 0.28 6.37 8.29 -40.82 -0.34 6.03 16 28 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 29 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 30 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 31 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 32 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.05 0.78 8.06 -51.93 -0.42 0.36 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.08 1.28 8.13 -51.93 -0.42 0.86 16 40 H 0.05 0.85 7.83 -51.93 -0.41 0.44 16 41 H 0.12 2.62 7.55 -52.49 -0.40 2.22 16 LS Contribution 344.59 15.07 5.19 5.19 Total: -1.00 -28.66 344.59 -10.07 -38.73 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.42 Total: 7.54 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -4.37 Total: -10.11 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.07 Total: -47.56 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.38 Total: -6.54 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.02 Total: 12.74 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.66 -10.07 -38.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243464035.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.664 kcal (2) G-P(sol) polarization free energy of solvation -28.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds