Wall clock time and date at job start Fri Apr 10 2020 22:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86799 * 119.99950 * 2 1 4 4 H 1.48497 * 109.47086 * 239.99596 * 3 2 1 5 5 H 1.48500 * 109.46938 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47189 * 120.00040 * 3 2 1 7 7 C 1.40070 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00145 * 179.97438 * 7 2 1 9 9 C 1.40900 * 120.00089 * 0.02562 * 7 2 1 10 10 C 1.40930 * 119.67607 * 179.97438 * 9 7 2 11 11 C 1.36594 * 119.26940 * 180.02562 * 10 9 7 12 12 C 1.40376 * 118.60619 * 0.02562 * 11 10 9 13 13 C 1.47746 * 120.35670 * 179.97438 * 12 11 10 14 14 C 1.39867 * 120.60384 * 309.99981 * 13 12 11 15 15 C 1.38417 * 118.36781 * 180.02562 * 14 13 12 16 16 C 1.38339 * 119.50181 * 0.28388 * 15 14 13 17 17 N 1.31941 * 121.20180 * 359.41981 * 16 15 14 18 18 C 1.32338 * 121.77145 * 0.58453 * 17 16 15 19 19 N 1.38539 * 119.81861 * 179.72459 * 18 17 16 20 20 C 1.47020 * 110.99682 * 68.49463 * 19 18 17 21 21 C 1.53097 * 109.25460 * 177.60490 * 20 19 18 22 22 O 1.43013 * 109.26054 * 56.85012 * 21 20 19 23 23 C 1.43014 * 113.73651 * 301.32673 * 22 21 20 24 24 C 1.47006 * 111.00384 * 304.85750 * 19 18 17 25 25 C 1.40210 * 119.28833 * 0.24834 * 12 11 10 26 26 N 1.31169 * 120.67055 * 359.47732 * 25 12 11 27 27 H 0.97005 * 120.00360 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.35915 * 0.04218 * 10 9 7 29 29 H 1.08007 * 120.69852 * 180.02562 * 11 10 9 30 30 H 1.08002 * 120.81574 * 0.04873 * 14 13 12 31 31 H 1.08002 * 120.24864 * 179.97438 * 15 14 13 32 32 H 1.07995 * 119.39924 * 179.71912 * 16 15 14 33 33 H 1.09000 * 109.50290 * 297.53726 * 20 19 18 34 34 H 1.09005 * 109.50333 * 57.66913 * 20 19 18 35 35 H 1.08996 * 109.50819 * 296.91226 * 21 20 19 36 36 H 1.09005 * 109.53944 * 176.80440 * 21 20 19 37 37 H 1.09003 * 109.51035 * 298.73803 * 23 22 21 38 38 H 1.08999 * 109.54181 * 178.62842 * 23 22 21 39 39 H 1.09005 * 109.50878 * 302.32725 * 24 19 18 40 40 H 1.08997 * 109.50859 * 62.45716 * 24 19 18 41 41 H 1.08002 * 119.66573 * 179.74316 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0951 1.6964 -1.2124 5 1 1.2762 2.7464 -0.0006 6 1 3.0950 1.6964 1.2125 7 6 2.0076 -1.2130 0.0005 8 1 3.0876 -1.2131 0.0001 9 6 1.3031 -2.4333 0.0005 10 6 2.0147 -3.6498 0.0005 11 6 1.3233 -4.8278 0.0000 12 6 -0.0797 -4.7837 -0.0011 13 6 -0.8661 -6.0345 -0.0022 14 6 -0.5893 -7.0488 -0.9247 15 6 -1.3552 -8.2011 -0.8848 16 6 -2.3666 -8.3147 0.0522 17 7 -2.6083 -7.3485 0.9176 18 6 -1.9066 -6.2266 0.9234 19 7 -2.1988 -5.2360 1.8468 20 6 -1.8511 -5.6664 3.2089 21 6 -2.1335 -4.5231 4.1872 22 8 -3.5054 -4.1349 4.0757 23 6 -3.8784 -3.7093 2.7623 24 6 -3.6136 -4.8443 1.7695 25 6 -0.7269 -3.5399 -0.0069 26 7 -0.0349 -2.4256 -0.0010 27 1 -0.4851 0.8401 0.0004 28 1 3.0947 -3.6504 0.0012 29 1 1.8452 -5.7734 0.0004 30 1 0.2029 -6.9359 -1.6500 31 1 -1.1679 -9.0033 -1.5832 32 1 -2.9661 -9.2125 0.0789 33 1 -2.4514 -6.5346 3.4806 34 1 -0.7934 -5.9272 3.2493 35 1 -1.4942 -3.6733 3.9482 36 1 -1.9310 -4.8561 5.2052 37 1 -3.2897 -2.8358 2.4818 38 1 -4.9379 -3.4538 2.7489 39 1 -3.8427 -4.5050 0.7592 40 1 -4.2421 -5.6994 2.0182 41 1 -1.8061 -3.4989 -0.0119 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243464035.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:22 Heat of formation + Delta-G solvation = 23.931891 kcal Electronic energy + Delta-G solvation = -25747.519745 eV Core-core repulsion = 22205.864976 eV Total energy + Delta-G solvation = -3541.654769 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.71751 -40.07108 -39.64781 -36.64488 -35.72064 -33.99189 -32.39134 -32.23216 -32.11431 -30.59594 -28.06350 -27.21810 -25.08086 -24.49216 -23.94962 -23.13069 -22.13581 -21.41620 -19.38668 -18.65709 -17.62224 -17.43124 -17.20101 -16.90665 -16.32162 -16.30313 -16.04545 -15.86422 -15.81682 -15.25285 -14.78827 -14.46329 -14.40354 -14.11041 -13.96974 -13.69627 -13.40501 -13.22701 -12.83374 -12.74896 -12.68835 -12.56226 -12.40270 -12.22473 -11.80645 -11.66073 -11.29859 -10.95696 -10.76336 -10.51393 -10.20904 -9.91943 -9.52374 -9.43174 -9.05115 -8.29076 -6.47409 0.05470 0.32524 1.03177 1.27622 1.41280 1.53408 1.57165 2.22139 2.56106 2.77195 2.85832 2.93516 3.59101 3.85848 3.94129 3.98509 4.09862 4.10872 4.13094 4.17923 4.26952 4.27933 4.33314 4.38525 4.44443 4.52281 4.61549 4.76110 4.80898 4.89696 4.92020 4.94750 5.03039 5.18149 5.22931 5.31348 5.55643 5.63240 5.73789 5.78963 5.94398 6.07038 6.14695 6.27197 6.39167 6.72130 6.96656 7.04701 8.22820 8.42688 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.013911 B = 0.004837 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.258328 B = 5787.167159 C = 7179.624798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.024 3.976 3 Si 0.986 3.014 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.457 4.457 8 H 0.090 0.910 9 C 0.225 3.775 10 C -0.290 4.290 11 C -0.038 4.038 12 C -0.244 4.244 13 C -0.028 4.028 14 C -0.089 4.089 15 C -0.155 4.155 16 C 0.081 3.919 17 N -0.524 5.524 18 C 0.263 3.737 19 N -0.485 5.485 20 C 0.037 3.963 21 C 0.069 3.931 22 O -0.393 6.393 23 C 0.066 3.934 24 C 0.034 3.966 25 C 0.168 3.832 26 N -0.522 5.522 27 H 0.280 0.720 28 H 0.109 0.891 29 H 0.122 0.878 30 H 0.142 0.858 31 H 0.170 0.830 32 H 0.182 0.818 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.125 0.875 37 H 0.045 0.955 38 H 0.125 0.875 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 -10.924 1.562 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.198 4.198 3 Si 0.805 3.195 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.487 4.487 8 H 0.108 0.892 9 C 0.101 3.899 10 C -0.312 4.312 11 C -0.061 4.061 12 C -0.249 4.249 13 C -0.033 4.033 14 C -0.115 4.115 15 C -0.174 4.174 16 C -0.078 4.078 17 N -0.236 5.236 18 C 0.035 3.965 19 N -0.209 5.209 20 C -0.090 4.090 21 C -0.008 4.008 22 O -0.312 6.312 23 C -0.010 4.010 24 C -0.093 4.093 25 C 0.001 3.999 26 N -0.234 5.234 27 H 0.091 0.909 28 H 0.127 0.873 29 H 0.140 0.860 30 H 0.160 0.840 31 H 0.188 0.812 32 H 0.199 0.801 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.142 0.858 37 H 0.063 0.937 38 H 0.142 0.858 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.421 -9.620 2.243 11.268 hybrid contribution 1.210 -0.568 -0.711 1.514 sum -4.211 -10.188 1.532 11.130 Atomic orbital electron populations 1.70228 1.08914 1.29277 1.28295 1.27010 0.95696 1.04542 0.92598 0.85214 0.78662 0.75448 0.80129 1.18192 1.19313 1.18287 1.19978 0.94957 0.90592 1.43181 0.89157 1.19042 0.88965 0.93204 0.88710 1.21522 0.99379 0.93601 1.16711 1.20836 0.92874 0.97110 0.95303 1.18904 0.92823 0.92391 1.20801 1.19524 0.95030 0.94306 0.94422 1.21960 0.99718 0.92810 0.97038 1.22364 0.95957 0.98554 1.00509 1.23035 0.96543 0.97110 0.91065 1.67616 1.28811 1.01880 1.25341 1.19816 0.93833 0.88900 0.93946 1.60027 1.21018 1.35244 1.04581 1.22655 1.01257 0.97753 0.87327 1.22698 0.82558 0.95582 0.99987 1.87912 1.27345 1.85666 1.30279 1.22739 1.01990 0.94925 0.81383 1.22675 0.87188 0.98684 1.00757 1.22654 0.98189 0.87830 0.91215 1.68732 1.07503 1.27848 1.19339 0.90944 0.87281 0.86038 0.83989 0.81218 0.80108 0.93093 0.90762 0.93938 0.85764 0.93668 0.85764 0.90496 0.92738 0.86725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.92 11.44 21.84 0.25 -39.67 16 2 C 0.02 1.23 5.50 85.30 0.47 1.70 16 3 Si 0.99 37.44 29.56 68.60 2.03 39.47 16 4 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 5 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 6 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 7 C -0.46 -24.41 9.11 23.37 0.21 -24.19 16 8 H 0.09 4.47 7.85 -2.91 -0.02 4.45 16 9 C 0.22 12.33 6.55 40.15 0.26 12.59 16 10 C -0.29 -13.96 9.76 22.54 0.22 -13.74 16 11 C -0.04 -1.61 9.62 22.41 0.22 -1.40 16 12 C -0.24 -10.53 5.30 -19.76 -0.10 -10.64 16 13 C -0.03 -1.03 5.52 -19.80 -0.11 -1.14 16 14 C -0.09 -2.57 9.69 22.71 0.22 -2.35 16 15 C -0.15 -3.43 10.09 22.34 0.23 -3.20 16 16 C 0.08 1.95 11.17 84.70 0.95 2.90 16 17 N -0.52 -16.33 9.58 -192.28 -1.84 -18.17 16 18 C 0.26 9.19 5.30 133.59 0.71 9.89 16 19 N -0.49 -17.06 2.94 -699.92 -2.06 -19.11 16 20 C 0.04 1.18 5.53 86.31 0.48 1.66 16 21 C 0.07 2.06 7.01 72.01 0.50 2.56 16 22 O -0.39 -12.34 10.83 -148.98 -1.61 -13.95 16 23 C 0.07 1.98 7.01 72.02 0.50 2.49 16 24 C 0.03 1.08 5.30 86.32 0.46 1.53 16 25 C 0.17 8.22 9.93 85.27 0.85 9.07 16 26 N -0.52 -29.03 7.83 -188.15 -1.47 -30.51 16 27 H 0.28 13.57 8.29 -92.70 -0.77 12.80 16 28 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 29 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 30 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 31 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 32 H 0.18 2.97 8.06 -2.91 -0.02 2.94 16 33 H 0.05 1.59 8.06 -2.39 -0.02 1.57 16 34 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 35 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.12 2.93 8.14 -2.38 -0.02 2.91 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.08 2.46 8.13 -2.38 -0.02 2.44 16 40 H 0.05 1.69 7.83 -2.39 -0.02 1.67 16 41 H 0.12 5.48 7.55 -2.91 -0.02 5.46 16 Total: -1.00 -65.39 344.59 2.38 -63.00 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 1.04 Total: 31.20 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 6.06 Total: -12.27 kcal Atomic # 7 Polarization: -102.33 SS G_CDS: -5.12 Total: -107.46 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -1.61 Total: -13.95 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Total: -65.39 2.38 -63.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243464035.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.935 kcal (2) G-P(sol) polarization free energy of solvation -65.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds