Wall clock time and date at job start Fri Apr 10 2020 22:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30714 * 1 3 3 Si 1.86796 * 120.00221 * 2 1 4 4 H 1.48509 * 109.47028 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47018 * 299.99895 * 3 2 1 6 6 H 1.48498 * 109.47433 * 60.00278 * 3 2 1 7 7 C 1.40131 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00126 * 179.97438 * 7 2 1 9 9 C 1.40722 * 120.00127 * 359.97438 * 7 2 1 10 10 N 1.33728 * 119.94835 * 19.21081 * 9 7 2 11 11 C 1.31264 * 121.63794 * 180.28754 * 10 9 7 12 12 C 1.39090 * 121.37065 * 359.72747 * 11 10 9 13 13 C 1.38307 * 119.74353 * 359.97438 * 12 11 10 14 14 C 1.39815 * 118.47322 * 0.02562 * 13 12 11 15 15 C 1.47578 * 120.66386 * 179.97438 * 14 13 12 16 16 C 1.39951 * 120.61014 * 292.85219 * 15 14 13 17 17 C 1.38386 * 118.36679 * 180.02562 * 16 15 14 18 18 C 1.38359 * 119.50487 * 0.02562 * 17 16 15 19 19 N 1.31937 * 121.22019 * 0.26141 * 18 17 16 20 20 C 1.32329 * 121.78166 * 359.46937 * 19 18 17 21 21 N 1.38499 * 119.82919 * 180.27674 * 20 19 18 22 22 C 1.47015 * 111.00519 * 72.62704 * 21 20 19 23 23 C 1.53100 * 109.25836 * 177.61192 * 22 21 20 24 24 O 1.43012 * 109.26138 * 56.84689 * 23 22 21 25 25 C 1.43013 * 113.73989 * 301.33295 * 24 23 22 26 26 C 1.47015 * 110.99561 * 308.99075 * 21 20 19 27 27 H 0.97005 * 119.99575 * 359.97438 * 1 2 3 28 28 H 1.08007 * 119.31084 * 179.74743 * 11 10 9 29 29 H 1.07997 * 120.13447 * 180.02562 * 12 11 10 30 30 H 1.08006 * 120.76352 * 179.97438 * 13 12 11 31 31 H 1.08008 * 120.81545 * 0.04926 * 16 15 14 32 32 H 1.07997 * 120.24784 * 179.97438 * 17 16 15 33 33 H 1.07999 * 119.39096 * 179.97438 * 18 17 16 34 34 H 1.08994 * 109.50481 * 297.54420 * 22 21 20 35 35 H 1.09003 * 109.50286 * 57.67624 * 22 21 20 36 36 H 1.09004 * 109.50581 * 296.91259 * 23 22 21 37 37 H 1.09001 * 109.53693 * 176.80993 * 23 22 21 38 38 H 1.08996 * 109.50694 * 298.72968 * 25 24 23 39 39 H 1.09001 * 109.53977 * 178.62135 * 25 24 23 40 40 H 1.08992 * 109.51134 * 302.33183 * 26 21 20 41 41 H 1.09007 * 109.50677 * 62.46203 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.7013 1.3462 -0.0006 5 1 1.8825 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0078 -1.2136 0.0005 8 1 3.0878 -1.2137 0.0001 9 6 1.3041 -2.4323 0.0016 10 7 0.0226 -2.4636 -0.3791 11 6 -0.6667 -3.5806 -0.3855 12 6 -0.0928 -4.7878 -0.0009 13 6 1.2311 -4.8220 0.3978 14 6 1.9572 -3.6271 0.4014 15 6 3.3727 -3.6079 0.8183 16 6 3.7283 -3.8735 2.1456 17 6 5.0694 -3.8425 2.4857 18 6 6.0120 -3.5525 1.5154 19 7 5.6562 -3.2993 0.2704 20 6 4.3890 -3.3205 -0.1104 21 7 4.0615 -3.0540 -1.4295 22 6 4.4404 -4.1740 -2.3032 23 6 4.0076 -3.8635 -3.7385 24 8 4.5993 -2.6293 -4.1531 25 6 4.2510 -1.5169 -3.3246 26 6 4.6862 -1.8036 -1.8850 27 1 -0.4850 0.8401 0.0004 28 1 -1.7009 -3.5620 -0.6963 29 1 -0.6784 -5.6951 -0.0141 30 1 1.6932 -5.7501 0.7002 31 1 2.9747 -4.0975 2.8861 32 1 5.3778 -4.0425 3.5012 33 1 7.0580 -3.5284 1.7829 34 1 5.5211 -4.3116 -2.2706 35 1 3.9465 -5.0842 -1.9629 36 1 2.9217 -3.7790 -3.7810 37 1 4.3364 -4.6652 -4.3999 38 1 3.1722 -1.3640 -3.3551 39 1 4.7559 -0.6210 -3.6859 40 1 4.3719 -0.9835 -1.2396 41 1 5.7710 -1.9032 -1.8458 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243464077.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:27 Heat of formation + Delta-G solvation = 44.282912 kcal Electronic energy + Delta-G solvation = -26736.193689 eV Core-core repulsion = 23195.421407 eV Total energy + Delta-G solvation = -3540.772282 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.30419 -38.58645 -37.89932 -35.23865 -33.65793 -32.77593 -30.88691 -30.74237 -30.29869 -28.73306 -26.44000 -25.65384 -23.66394 -23.41268 -22.18703 -21.38131 -20.42309 -19.97853 -17.53725 -17.20705 -16.26843 -15.83647 -15.60284 -15.44067 -14.87458 -14.76259 -14.62790 -14.37728 -14.18364 -13.79745 -13.43564 -12.99135 -12.84709 -12.51368 -12.24651 -12.11251 -12.01486 -11.64824 -11.32112 -11.26475 -11.05861 -11.03261 -10.86307 -10.43676 -10.22205 -10.00249 -9.56000 -9.40337 -9.32303 -9.10273 -8.52846 -8.14622 -7.94004 -7.54492 -7.37440 -6.55471 -4.51466 1.53920 1.77639 2.69032 2.92610 3.04048 3.06384 3.16661 3.88477 3.99005 4.18759 4.21909 4.69672 4.91511 5.24331 5.31624 5.41123 5.48713 5.52569 5.54309 5.59807 5.71164 5.77186 5.84345 5.89103 5.97456 6.03834 6.10883 6.14807 6.29828 6.35950 6.41672 6.48435 6.60830 6.68738 6.87533 6.99694 7.09001 7.24628 7.27547 7.44674 7.54884 7.66247 7.85686 8.00009 8.24963 8.42709 8.62048 8.92149 10.04152 10.25279 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.009308 B = 0.007712 C = 0.006871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.403916 B = 3629.779447 C = 4073.827548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.074 3.926 3 Si 0.894 3.106 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.414 4.414 8 H 0.087 0.913 9 C 0.296 3.704 10 N -0.483 5.483 11 C 0.130 3.870 12 C -0.316 4.316 13 C -0.038 4.038 14 C -0.214 4.214 15 C 0.013 3.987 16 C -0.082 4.082 17 C -0.175 4.175 18 C 0.080 3.920 19 N -0.515 5.515 20 C 0.290 3.710 21 N -0.456 5.456 22 C 0.029 3.971 23 C 0.068 3.932 24 O -0.390 6.390 25 C 0.064 3.936 26 C 0.028 3.972 27 H 0.274 0.726 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.144 0.856 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.055 -4.303 -0.227 8.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.151 4.151 3 Si 0.718 3.282 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.444 4.444 8 H 0.104 0.896 9 C 0.172 3.828 10 N -0.194 5.194 11 C -0.039 4.039 12 C -0.339 4.339 13 C -0.063 4.063 14 C -0.219 4.219 15 C 0.009 3.991 16 C -0.109 4.109 17 C -0.195 4.195 18 C -0.079 4.079 19 N -0.227 5.227 20 C 0.061 3.939 21 N -0.178 5.178 22 C -0.098 4.098 23 C -0.010 4.010 24 O -0.309 6.309 25 C -0.013 4.013 26 C -0.100 4.100 27 H 0.085 0.915 28 H 0.134 0.866 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.161 0.839 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.758 -3.045 -1.312 7.527 hybrid contribution 0.728 -0.416 1.410 1.641 sum 7.486 -3.461 0.099 8.248 Atomic orbital electron populations 1.69999 1.07198 1.28017 1.29344 1.26046 0.94780 1.00907 0.93370 0.86478 0.81059 0.81782 0.78887 1.18333 1.19454 1.19770 1.19523 0.94358 0.89035 1.41522 0.89555 1.18310 0.87500 0.90703 0.86272 1.68661 1.07525 1.25464 1.17744 1.22528 0.98313 0.88931 0.94112 1.21144 0.96437 0.98435 1.17875 1.20798 0.93776 0.95312 0.96400 1.19062 0.91738 0.95615 1.15535 1.19371 0.93893 0.94405 0.91431 1.21743 0.95779 0.97725 0.95618 1.21923 0.93963 1.03159 1.00482 1.22273 0.99271 0.98109 0.88214 1.67553 1.20703 1.14691 1.19740 1.19873 0.86759 0.96393 0.90894 1.59942 1.56698 1.02741 0.98463 1.22714 0.99215 0.94261 0.93599 1.22601 0.98373 0.86491 0.93491 1.87900 1.72590 1.17021 1.53353 1.22679 1.01171 0.88641 0.88773 1.22755 0.97344 0.92702 0.97158 0.91463 0.86579 0.88831 0.89047 0.85193 0.85597 0.83913 0.93601 0.90171 0.91951 0.88886 0.91402 0.88838 0.88993 0.93292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.62 11.67 55.56 0.65 -17.97 16 2 C 0.07 1.81 5.48 -17.32 -0.09 1.72 16 3 Si 0.89 18.25 29.56 -169.99 -5.02 13.23 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.41 -10.42 8.13 -37.93 -0.31 -10.73 16 8 H 0.09 2.13 3.60 -52.49 -0.19 1.94 16 9 C 0.30 7.56 6.32 -84.70 -0.53 7.02 16 10 N -0.48 -12.68 8.14 -10.89 -0.09 -12.77 16 11 C 0.13 3.01 11.17 -17.48 -0.20 2.81 16 12 C -0.32 -6.74 10.10 -39.24 -0.40 -7.14 16 13 C -0.04 -0.82 9.91 -38.97 -0.39 -1.21 16 14 C -0.21 -4.88 4.94 -104.09 -0.51 -5.39 16 15 C 0.01 0.27 4.57 -104.54 -0.48 -0.21 16 16 C -0.08 -1.46 9.92 -38.89 -0.39 -1.85 16 17 C -0.18 -2.63 10.09 -39.48 -0.40 -3.03 16 18 C 0.08 1.25 11.17 -17.46 -0.19 1.06 16 19 N -0.51 -9.55 9.56 -12.12 -0.12 -9.67 16 20 C 0.29 5.76 4.26 -155.00 -0.66 5.10 16 21 N -0.46 -8.86 3.36 -172.57 -0.58 -9.44 16 22 C 0.03 0.50 5.56 -3.71 -0.02 0.48 16 23 C 0.07 1.05 7.01 37.21 0.26 1.31 16 24 O -0.39 -6.61 10.83 -35.23 -0.38 -6.99 16 25 C 0.06 1.08 7.01 37.21 0.26 1.34 16 26 C 0.03 0.51 5.08 -3.71 -0.02 0.49 16 27 H 0.27 6.43 8.29 -40.82 -0.34 6.09 16 28 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 29 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 31 H 0.13 2.14 8.06 -52.48 -0.42 1.71 16 32 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.09 1.85 6.19 -51.93 -0.32 1.52 16 41 H 0.05 0.90 7.77 -51.93 -0.40 0.49 16 LS Contribution 338.18 15.07 5.10 5.10 Total: -1.00 -28.88 338.18 -9.63 -38.51 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -5.12 Total: 8.22 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -4.06 Total: -8.21 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.14 Total: -49.86 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.38 Total: -6.99 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.02 Total: 13.23 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.88 -9.63 -38.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243464077.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.791 kcal (2) G-P(sol) polarization free energy of solvation -28.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds