Wall clock time and date at job start Fri Apr 10 2020 22:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30714 * 1 3 3 Si 1.86796 * 120.00221 * 2 1 4 4 H 1.48509 * 109.47028 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47018 * 299.99895 * 3 2 1 6 6 H 1.48498 * 109.47433 * 60.00278 * 3 2 1 7 7 C 1.40131 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00126 * 179.97438 * 7 2 1 9 9 C 1.40722 * 120.00127 * 359.97438 * 7 2 1 10 10 N 1.33728 * 119.94835 * 19.21081 * 9 7 2 11 11 C 1.31264 * 121.63794 * 180.28754 * 10 9 7 12 12 C 1.39090 * 121.37065 * 359.72747 * 11 10 9 13 13 C 1.38307 * 119.74353 * 359.97438 * 12 11 10 14 14 C 1.39815 * 118.47322 * 0.02562 * 13 12 11 15 15 C 1.47578 * 120.66386 * 179.97438 * 14 13 12 16 16 C 1.39951 * 120.61014 * 292.85219 * 15 14 13 17 17 C 1.38386 * 118.36679 * 180.02562 * 16 15 14 18 18 C 1.38359 * 119.50487 * 0.02562 * 17 16 15 19 19 N 1.31937 * 121.22019 * 0.26141 * 18 17 16 20 20 C 1.32329 * 121.78166 * 359.46937 * 19 18 17 21 21 N 1.38499 * 119.82919 * 180.27674 * 20 19 18 22 22 C 1.47015 * 111.00519 * 72.62704 * 21 20 19 23 23 C 1.53100 * 109.25836 * 177.61192 * 22 21 20 24 24 O 1.43012 * 109.26138 * 56.84689 * 23 22 21 25 25 C 1.43013 * 113.73989 * 301.33295 * 24 23 22 26 26 C 1.47015 * 110.99561 * 308.99075 * 21 20 19 27 27 H 0.97005 * 119.99575 * 359.97438 * 1 2 3 28 28 H 1.08007 * 119.31084 * 179.74743 * 11 10 9 29 29 H 1.07997 * 120.13447 * 180.02562 * 12 11 10 30 30 H 1.08006 * 120.76352 * 179.97438 * 13 12 11 31 31 H 1.08008 * 120.81545 * 0.04926 * 16 15 14 32 32 H 1.07997 * 120.24784 * 179.97438 * 17 16 15 33 33 H 1.07999 * 119.39096 * 179.97438 * 18 17 16 34 34 H 1.08994 * 109.50481 * 297.54420 * 22 21 20 35 35 H 1.09003 * 109.50286 * 57.67624 * 22 21 20 36 36 H 1.09004 * 109.50581 * 296.91259 * 23 22 21 37 37 H 1.09001 * 109.53693 * 176.80993 * 23 22 21 38 38 H 1.08996 * 109.50694 * 298.72968 * 25 24 23 39 39 H 1.09001 * 109.53977 * 178.62135 * 25 24 23 40 40 H 1.08992 * 109.51134 * 302.33183 * 26 21 20 41 41 H 1.09007 * 109.50677 * 62.46203 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.7013 1.3462 -0.0006 5 1 1.8825 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0078 -1.2136 0.0005 8 1 3.0878 -1.2137 0.0001 9 6 1.3041 -2.4323 0.0016 10 7 0.0226 -2.4636 -0.3791 11 6 -0.6667 -3.5806 -0.3855 12 6 -0.0928 -4.7878 -0.0009 13 6 1.2311 -4.8220 0.3978 14 6 1.9572 -3.6271 0.4014 15 6 3.3727 -3.6079 0.8183 16 6 3.7283 -3.8735 2.1456 17 6 5.0694 -3.8425 2.4857 18 6 6.0120 -3.5525 1.5154 19 7 5.6562 -3.2993 0.2704 20 6 4.3890 -3.3205 -0.1104 21 7 4.0615 -3.0540 -1.4295 22 6 4.4404 -4.1740 -2.3032 23 6 4.0076 -3.8635 -3.7385 24 8 4.5993 -2.6293 -4.1531 25 6 4.2510 -1.5169 -3.3246 26 6 4.6862 -1.8036 -1.8850 27 1 -0.4850 0.8401 0.0004 28 1 -1.7009 -3.5620 -0.6963 29 1 -0.6784 -5.6951 -0.0141 30 1 1.6932 -5.7501 0.7002 31 1 2.9747 -4.0975 2.8861 32 1 5.3778 -4.0425 3.5012 33 1 7.0580 -3.5284 1.7829 34 1 5.5211 -4.3116 -2.2706 35 1 3.9465 -5.0842 -1.9629 36 1 2.9217 -3.7790 -3.7810 37 1 4.3364 -4.6652 -4.3999 38 1 3.1722 -1.3640 -3.3551 39 1 4.7559 -0.6210 -3.6859 40 1 4.3719 -0.9835 -1.2396 41 1 5.7710 -1.9032 -1.8458 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243464077.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:26 Heat of formation + Delta-G solvation = 27.467632 kcal Electronic energy + Delta-G solvation = -26736.922854 eV Core-core repulsion = 23195.421407 eV Total energy + Delta-G solvation = -3541.501448 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.70045 -40.01846 -39.54980 -36.60003 -35.44846 -34.30661 -32.25332 -32.19353 -32.00577 -30.29837 -27.89482 -27.34693 -25.04733 -24.87917 -23.59821 -23.13481 -21.99630 -21.37071 -19.31715 -18.58492 -17.78624 -17.24798 -17.05172 -16.91018 -16.29619 -16.22199 -16.06955 -15.94728 -15.87785 -15.17394 -14.81230 -14.47566 -14.35800 -13.95932 -13.89006 -13.71937 -13.40195 -13.19574 -12.91716 -12.83554 -12.68508 -12.42976 -12.34352 -12.06778 -11.71604 -11.60978 -11.18378 -10.94010 -10.72830 -10.47461 -10.06996 -9.80738 -9.38167 -9.33129 -9.04147 -8.34288 -6.35758 0.18652 0.40482 0.96603 1.21237 1.35380 1.46373 1.49834 2.19184 2.63014 2.86260 2.89277 2.90392 3.63578 3.91064 3.95925 4.03921 4.11720 4.15257 4.17646 4.21393 4.29320 4.37096 4.40044 4.44113 4.53943 4.55846 4.65563 4.78963 4.81192 4.91525 4.95025 4.98950 5.08664 5.23549 5.29290 5.39492 5.54763 5.68776 5.79100 5.88970 5.94906 6.10705 6.25542 6.41421 6.46732 6.81702 7.06490 7.12494 8.24902 8.48712 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.009308 B = 0.007712 C = 0.006871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.403916 B = 3629.779447 C = 4073.827548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.035 3.965 3 Si 0.956 3.044 4 H -0.257 1.257 5 H -0.263 1.263 6 H -0.268 1.268 7 C -0.435 4.435 8 H 0.085 0.915 9 C 0.270 3.730 10 N -0.522 5.522 11 C 0.104 3.896 12 C -0.305 4.305 13 C -0.049 4.049 14 C -0.207 4.207 15 C -0.023 4.023 16 C -0.088 4.088 17 C -0.160 4.160 18 C 0.083 3.917 19 N -0.531 5.531 20 C 0.278 3.722 21 N -0.475 5.475 22 C 0.034 3.966 23 C 0.070 3.930 24 O -0.392 6.392 25 C 0.069 3.931 26 C 0.036 3.964 27 H 0.277 0.723 28 H 0.132 0.868 29 H 0.124 0.876 30 H 0.117 0.883 31 H 0.138 0.862 32 H 0.170 0.830 33 H 0.182 0.818 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.128 0.872 38 H 0.045 0.955 39 H 0.120 0.880 40 H 0.071 0.929 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.218 -5.269 0.596 10.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.193 1.193 7 C -0.466 4.466 8 H 0.103 0.897 9 C 0.146 3.854 10 N -0.234 5.234 11 C -0.062 4.062 12 C -0.328 4.328 13 C -0.074 4.074 14 C -0.212 4.212 15 C -0.027 4.027 16 C -0.114 4.114 17 C -0.180 4.180 18 C -0.076 4.076 19 N -0.244 5.244 20 C 0.050 3.950 21 N -0.198 5.198 22 C -0.093 4.093 23 C -0.007 4.007 24 O -0.311 6.311 25 C -0.008 4.008 26 C -0.091 4.091 27 H 0.088 0.912 28 H 0.150 0.850 29 H 0.142 0.858 30 H 0.135 0.865 31 H 0.156 0.844 32 H 0.187 0.813 33 H 0.199 0.801 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.145 0.855 38 H 0.064 0.936 39 H 0.138 0.862 40 H 0.089 0.911 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.903 -4.041 -0.499 9.790 hybrid contribution 0.121 -0.313 1.243 1.287 sum 9.025 -4.354 0.744 10.047 Atomic orbital electron populations 1.70094 1.08602 1.28869 1.31406 1.26775 0.95404 1.03810 0.92646 0.85537 0.79752 0.77859 0.79057 1.18071 1.18780 1.19308 1.19640 0.94322 0.89674 1.42947 0.89695 1.18657 0.87714 0.92052 0.86991 1.68579 1.08537 1.27185 1.19105 1.22907 0.99163 0.89227 0.94857 1.21464 0.96746 0.98794 1.15793 1.21148 0.93923 0.96006 0.96290 1.19301 0.93106 0.95111 1.13712 1.19428 0.92860 0.97378 0.93076 1.21957 0.97547 0.97343 0.94601 1.22318 0.92366 1.00933 1.02352 1.23027 1.01340 0.95889 0.87315 1.67612 1.19899 1.15466 1.21373 1.19863 0.87203 0.96915 0.90986 1.59918 1.57412 1.03476 0.99014 1.22709 0.99110 0.93578 0.93877 1.22714 0.97444 0.86966 0.93576 1.87896 1.72559 1.17335 1.53310 1.22667 1.00082 0.89738 0.88276 1.22632 0.97092 0.91978 0.97421 0.91215 0.85040 0.85837 0.86466 0.84428 0.81270 0.80093 0.93510 0.90422 0.93614 0.85473 0.93634 0.86216 0.91108 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -41.04 11.67 21.86 0.26 -40.78 16 2 C 0.03 1.75 5.48 85.32 0.47 2.21 16 3 Si 0.96 38.40 29.56 68.60 2.03 40.43 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 6 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.43 -22.63 8.13 23.34 0.19 -22.44 16 8 H 0.09 4.33 3.60 -2.91 -0.01 4.32 16 9 C 0.27 14.24 6.32 40.37 0.25 14.49 16 10 N -0.52 -28.41 8.14 -188.38 -1.53 -29.94 16 11 C 0.10 4.94 11.17 84.98 0.95 5.89 16 12 C -0.31 -12.81 10.10 22.49 0.23 -12.58 16 13 C -0.05 -2.07 9.91 22.67 0.22 -1.85 16 14 C -0.21 -9.52 4.94 -19.52 -0.10 -9.62 16 15 C -0.02 -0.94 4.57 -19.81 -0.09 -1.03 16 16 C -0.09 -2.96 9.92 22.72 0.23 -2.74 16 17 C -0.16 -4.22 10.09 22.33 0.23 -4.00 16 18 C 0.08 2.32 11.17 84.71 0.95 3.27 16 19 N -0.53 -18.78 9.56 -192.25 -1.84 -20.62 16 20 C 0.28 10.93 4.26 133.63 0.57 11.50 16 21 N -0.48 -18.59 3.36 -699.90 -2.35 -20.94 16 22 C 0.03 1.15 5.56 86.31 0.48 1.63 16 23 C 0.07 2.13 7.01 72.02 0.50 2.64 16 24 O -0.39 -12.98 10.83 -148.98 -1.61 -14.59 16 25 C 0.07 2.34 7.01 72.02 0.50 2.85 16 26 C 0.04 1.34 5.08 86.32 0.44 1.78 16 27 H 0.28 13.56 8.29 -92.70 -0.77 12.79 16 28 H 0.13 5.55 8.06 -2.91 -0.02 5.53 16 29 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 30 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 31 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 32 H 0.17 2.98 8.06 -2.91 -0.02 2.95 16 33 H 0.18 3.60 8.06 -2.91 -0.02 3.58 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 40 H 0.07 2.91 6.19 -2.39 -0.01 2.90 16 41 H 0.05 1.80 7.77 -2.38 -0.02 1.78 16 Total: -1.00 -64.75 338.18 2.02 -62.73 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 1.05 Total: 31.72 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 6.02 Total: -8.01 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -5.47 Total: -112.28 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -1.61 Total: -14.59 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -64.75 2.02 -62.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243464077.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.202 kcal (2) G-P(sol) polarization free energy of solvation -64.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds