Wall clock time and date at job start Fri Apr 10 2020 22:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38214 * 120.34767 * 2 1 4 4 C 1.39716 * 118.51169 * 180.02562 * 3 2 1 5 5 N 1.38554 * 120.48381 * 180.02562 * 4 3 2 6 6 C 1.46496 * 119.99834 * 0.02562 * 5 4 3 7 7 C 1.53000 * 117.50075 * 223.62049 * 6 5 4 8 8 C 1.52996 * 117.49797 * 154.99658 * 6 5 4 9 9 N 1.32848 * 119.03582 * 359.75965 * 4 3 2 10 10 C 1.32626 * 120.59902 * 0.49908 * 9 4 3 11 11 C 1.48148 * 119.18709 * 179.76413 * 10 9 4 12 12 C 1.39378 * 120.16919 * 359.72987 * 11 10 9 13 13 C 1.37957 * 119.94013 * 179.97438 * 12 11 10 14 14 C 1.38479 * 120.28427 * 359.97438 * 13 12 11 15 15 C 1.38072 * 120.34594 * 0.02562 * 14 13 12 16 16 C 1.38796 * 120.05044 * 0.02562 * 15 14 13 17 17 O 1.35611 * 120.14228 * 179.97438 * 16 15 14 18 18 C 1.34812 * 117.00079 * 354.58620 * 17 16 15 19 19 H 1.08001 * 120.00262 * 354.40896 * 18 17 16 20 20 C 1.38672 * 120.00271 * 174.41322 * 18 17 16 21 21 N 1.31545 * 120.00253 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99889 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47027 * 89.99948 * 22 20 18 24 24 H 1.48498 * 109.47476 * 210.00235 * 22 20 18 25 25 H 1.48510 * 109.47036 * 330.00466 * 22 20 18 26 26 N 1.32387 * 120.34670 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.47305 * 269.97457 * 1 2 3 28 28 H 1.09004 * 109.47221 * 29.97209 * 1 2 3 29 29 H 1.09007 * 109.47465 * 149.97456 * 1 2 3 30 30 H 1.07995 * 120.74762 * 0.04880 * 3 2 1 31 31 H 0.96998 * 119.99818 * 180.02562 * 5 4 3 32 32 H 1.09007 * 115.54966 * 9.33110 * 6 5 4 33 33 H 1.09004 * 117.49781 * 0.02562 * 7 6 5 34 34 H 1.08997 * 117.50016 * 145.01736 * 7 6 5 35 35 H 1.08998 * 117.50000 * 214.97642 * 8 6 5 36 36 H 1.08995 * 117.50123 * 0.02562 * 8 6 5 37 37 H 1.07996 * 120.02492 * 359.95205 * 12 11 10 38 38 H 1.08000 * 119.85348 * 180.02562 * 13 12 11 39 39 H 1.08003 * 119.82517 * 180.02562 * 14 13 12 40 40 H 1.08003 * 119.97804 * 179.72719 * 15 14 13 41 41 H 0.96992 * 119.99761 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2053 1.1928 0.0000 4 6 3.6018 1.1480 -0.0005 5 7 4.3425 2.3189 0.0000 6 6 3.6620 3.6162 0.0017 7 6 4.2031 4.6990 -0.9340 8 6 4.4234 4.8126 0.5758 9 7 4.2090 -0.0336 0.0038 10 6 3.5023 -1.1558 -0.0013 11 6 4.2118 -2.4564 -0.0015 12 6 5.6050 -2.4943 -0.0021 13 6 6.2609 -3.7080 -0.0017 14 6 5.5408 -4.8908 -0.0003 15 6 4.1603 -4.8671 0.0002 16 6 3.4860 -3.6539 -0.0012 17 8 2.1301 -3.6284 -0.0011 18 6 1.4957 -4.8126 -0.1131 19 1 2.0630 -5.7148 -0.2880 20 6 0.1146 -4.8724 -0.0036 21 7 -0.5044 -6.0280 -0.1123 22 14 -0.8668 -3.3121 0.2995 23 1 -1.2446 -2.7043 -1.0017 24 1 -2.0945 -3.6408 1.0675 25 1 -0.0411 -2.3506 1.0738 26 7 2.1759 -1.1425 -0.0005 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3634 0.8903 -0.5134 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6833 2.1382 0.0008 31 1 5.3117 2.2796 -0.0008 32 1 2.5843 3.5815 0.1619 33 1 5.0652 4.4461 -1.5512 34 1 3.4814 5.3769 -1.3898 35 1 3.8467 5.5653 1.1133 36 1 5.4308 4.6346 0.9519 37 1 6.1706 -1.5742 -0.0031 38 1 7.3405 -3.7357 -0.0017 39 1 6.0618 -5.8369 0.0004 40 1 3.6046 -5.7932 -0.0031 41 1 -1.4704 -6.0698 -0.0354 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243581095.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:30 Heat of formation + Delta-G solvation = 92.596030 kcal Electronic energy + Delta-G solvation = -25128.760288 eV Core-core repulsion = 21590.083020 eV Total energy + Delta-G solvation = -3538.677268 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.58766 -39.03555 -38.07229 -36.47140 -34.62531 -33.52397 -32.40696 -30.63850 -29.81505 -28.90358 -27.81676 -25.27751 -24.26238 -22.73834 -22.66324 -21.66880 -20.99695 -20.53210 -17.93337 -17.79457 -17.30296 -16.83340 -15.56158 -15.43082 -15.04005 -14.85829 -14.60964 -14.53116 -13.81848 -13.78377 -13.66606 -13.16193 -13.11769 -12.92017 -12.64702 -12.54140 -12.25649 -12.19053 -11.90157 -11.69705 -11.29591 -10.98982 -10.80599 -10.68846 -10.62007 -10.33332 -10.12168 -9.92894 -9.48409 -9.38784 -8.84471 -8.51582 -8.20758 -7.79695 -7.24918 -6.42139 -4.04439 1.10500 1.81353 2.33915 2.37667 2.86573 3.28230 3.29244 3.54822 3.55697 4.24397 4.32540 4.41972 4.47934 4.55173 4.60924 4.71276 4.74928 4.89061 4.94071 5.14212 5.28698 5.41541 5.46159 5.54314 5.57428 5.64756 5.73247 5.75197 5.81784 5.85832 5.96180 6.10006 6.24171 6.32774 6.53698 6.60789 6.74013 6.95330 7.13680 7.24271 7.30401 7.43226 7.62096 7.76543 7.86293 8.02366 8.86425 8.93179 9.60541 10.62835 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.004962 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.698144 B = 5641.137272 C = 7662.007622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.207 3.793 3 C -0.319 4.319 4 C 0.440 3.560 5 N -0.691 5.691 6 C 0.093 3.907 7 C -0.197 4.197 8 C -0.191 4.191 9 N -0.586 5.586 10 C 0.427 3.573 11 C -0.141 4.141 12 C -0.021 4.021 13 C -0.225 4.225 14 C -0.053 4.053 15 C -0.233 4.233 16 C 0.195 3.805 17 O -0.157 6.157 18 C -0.389 4.389 19 H 0.105 0.895 20 C 0.066 3.934 21 N -0.874 5.874 22 Si 0.901 3.099 23 H -0.274 1.274 24 H -0.293 1.293 25 H -0.232 1.232 26 N -0.516 5.516 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.132 0.868 31 H 0.405 0.595 32 H 0.133 0.867 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.125 0.875 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.137 0.863 41 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.045 17.829 0.478 19.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.062 3.938 3 C -0.346 4.346 4 C 0.197 3.803 5 N -0.323 5.323 6 C -0.015 4.015 7 C -0.236 4.236 8 C -0.230 4.230 9 N -0.311 5.311 10 C 0.166 3.834 11 C -0.145 4.145 12 C -0.041 4.041 13 C -0.244 4.244 14 C -0.072 4.072 15 C -0.252 4.252 16 C 0.137 3.863 17 O -0.056 6.056 18 C -0.465 4.465 19 H 0.123 0.877 20 C -0.138 4.138 21 N -0.511 5.511 22 Si 0.727 3.273 23 H -0.200 1.200 24 H -0.220 1.220 25 H -0.155 1.155 26 N -0.234 5.234 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.150 0.850 31 H 0.241 0.759 32 H 0.151 0.849 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.143 0.857 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.154 0.846 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.913 17.158 0.512 18.506 hybrid contribution -0.461 1.222 0.043 1.307 sum 6.451 18.380 0.555 19.487 Atomic orbital electron populations 1.21005 0.89171 1.03614 1.03288 1.21337 0.96932 0.87703 0.87819 1.21796 0.93467 1.00188 1.19167 1.18244 0.88154 0.86143 0.87757 1.43618 1.08061 1.00813 1.79812 1.21532 0.96995 0.79029 1.03932 1.23484 1.04280 1.02696 0.93135 1.23403 1.02439 1.00674 0.96454 1.67782 1.41076 0.97061 1.25195 1.20901 0.85647 0.90155 0.86738 1.17127 0.91940 0.86638 1.18845 1.20786 0.91800 0.97785 0.93693 1.20575 0.98805 0.92296 1.12763 1.20947 0.93584 0.97518 0.95110 1.21234 0.94524 0.98228 1.11193 1.19063 0.84132 0.91970 0.91169 1.83894 1.13302 1.32460 1.75938 1.20958 0.91224 0.84938 1.49363 0.87729 1.24519 0.95835 0.98280 0.95192 1.69660 1.10308 1.24457 1.46655 0.86403 0.78442 0.82995 0.79434 1.19989 1.21962 1.15466 1.68645 1.08290 1.28350 1.18162 0.89988 0.90779 0.89905 0.85006 0.75869 0.84947 0.88460 0.88007 0.87868 0.88450 0.85704 0.87103 0.87024 0.84569 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 8.91 36.01 0.32 -1.49 16 2 C 0.21 3.87 6.81 -82.36 -0.56 3.31 16 3 C -0.32 -5.01 9.08 -39.04 -0.35 -5.36 16 4 C 0.44 7.12 7.71 -154.85 -1.19 5.92 16 5 N -0.69 -8.31 5.72 -53.79 -0.31 -8.62 16 6 C 0.09 0.83 6.32 -67.93 -0.43 0.41 16 7 C -0.20 -1.42 10.46 -26.73 -0.28 -1.70 16 8 C -0.19 -1.32 10.45 -26.73 -0.28 -1.60 16 9 N -0.59 -11.10 9.49 -10.40 -0.10 -11.20 16 10 C 0.43 9.27 7.55 -156.94 -1.19 8.08 16 11 C -0.14 -3.10 5.89 -104.73 -0.62 -3.72 16 12 C -0.02 -0.39 9.56 -39.26 -0.38 -0.76 16 13 C -0.23 -3.88 10.03 -39.60 -0.40 -4.28 16 14 C -0.05 -0.96 10.03 -39.55 -0.40 -1.35 16 15 C -0.23 -5.06 9.13 -39.44 -0.36 -5.42 16 16 C 0.19 4.66 6.65 -38.71 -0.26 4.40 16 17 O -0.16 -4.16 6.38 0.53 0.00 -4.15 16 18 C -0.39 -10.91 9.90 30.89 0.31 -10.61 16 19 H 0.11 2.98 5.52 -52.49 -0.29 2.69 16 20 C 0.07 1.85 5.49 -17.51 -0.10 1.76 16 21 N -0.87 -25.18 13.96 55.48 0.77 -24.41 16 22 Si 0.90 21.60 25.78 -169.99 -4.38 17.22 16 23 H -0.27 -6.39 6.75 56.52 0.38 -6.01 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.23 -5.46 6.12 56.52 0.35 -5.11 16 26 N -0.52 -11.55 8.07 -7.50 -0.06 -11.61 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 29 H 0.08 1.53 4.78 -51.93 -0.25 1.28 16 30 H 0.13 1.60 5.99 -52.49 -0.31 1.28 16 31 H 0.41 4.47 8.95 -40.82 -0.37 4.11 16 32 H 0.13 1.12 5.93 -51.92 -0.31 0.81 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.13 2.12 7.51 -52.49 -0.39 1.73 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 39 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 40 H 0.14 3.05 5.70 -52.48 -0.30 2.75 16 41 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 340.97 15.07 5.14 5.14 Total: -1.00 -31.39 340.97 -9.90 -41.29 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -4.81 Total: 8.75 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -6.16 Total: -12.42 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.31 Total: -55.83 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: 0.00 Total: -4.15 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.38 Total: 17.22 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.39 -9.90 -41.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243581095.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.885 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds