Wall clock time and date at job start Fri Apr 10 2020 22:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34800 * 120.34447 * 2 1 4 4 C 1.46933 * 118.36893 * 179.97438 * 3 2 1 5 5 N 1.31972 * 120.55435 * 180.02562 * 4 3 2 6 6 C 1.46496 * 120.00030 * 179.97438 * 5 4 3 7 7 C 1.53000 * 117.49891 * 188.74943 * 6 5 4 8 8 C 1.53006 * 117.49697 * 120.09000 * 6 5 4 9 9 N 1.34995 * 118.89811 * 0.02562 * 4 3 2 10 10 C 1.31373 * 120.53823 * 0.02562 * 9 4 3 11 11 C 1.47643 * 119.10286 * 179.97438 * 10 9 4 12 12 C 1.39734 * 120.07597 * 179.72312 * 11 10 9 13 13 C 1.37698 * 119.92280 * 179.73960 * 12 11 10 14 14 C 1.39100 * 120.07495 * 0.53040 * 13 12 11 15 15 O 1.35604 * 119.92570 * 179.74045 * 14 13 12 16 16 C 1.34811 * 117.00513 * 174.42800 * 15 14 13 17 17 H 1.08001 * 119.99727 * 5.05646 * 16 15 14 18 18 C 1.38689 * 120.00267 * 185.05849 * 16 15 14 19 19 N 1.31522 * 120.00267 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99848 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47362 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46951 * 120.00300 * 20 18 16 23 23 H 1.48508 * 109.47457 * 239.99926 * 20 18 16 24 24 C 1.39105 * 120.15507 * 359.72123 * 14 13 12 25 25 C 1.37692 * 120.07371 * 0.02562 * 24 14 13 26 26 N 1.36307 * 121.79272 * 359.97438 * 10 9 4 27 27 H 0.96996 * 119.45162 * 180.02562 * 26 10 9 28 28 H 1.09001 * 109.47571 * 89.99694 * 1 2 3 29 29 H 1.08994 * 109.47472 * 209.99812 * 1 2 3 30 30 H 1.09001 * 109.47139 * 330.00095 * 1 2 3 31 31 H 1.08002 * 120.81793 * 359.97438 * 3 2 1 32 32 H 1.09001 * 115.55213 * 334.42306 * 6 5 4 33 33 H 1.08999 * 117.49684 * 0.02562 * 7 6 5 34 34 H 1.09000 * 117.50264 * 145.02349 * 7 6 5 35 35 H 1.09001 * 117.50029 * 214.97912 * 8 6 5 36 36 H 1.08996 * 117.49592 * 0.02562 * 8 6 5 37 37 H 1.07998 * 120.03955 * 0.02562 * 12 11 10 38 38 H 1.07999 * 119.96369 * 180.23463 * 13 12 11 39 39 H 0.96999 * 120.00138 * 179.97438 * 19 18 16 40 40 H 1.07997 * 119.96427 * 179.97438 * 24 14 13 41 41 H 1.08002 * 120.04117 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1880 1.1633 0.0000 4 6 3.6564 1.1127 0.0006 5 7 4.3661 2.2254 0.0011 6 6 5.8296 2.1607 0.0022 7 6 6.5944 3.4696 0.2093 8 6 6.5663 2.8093 -1.1715 9 7 4.2677 -0.0910 0.0006 10 6 3.5611 -1.1985 -0.0005 11 6 4.2623 -2.4977 -0.0010 12 6 3.5309 -3.6883 0.0037 13 6 4.1881 -4.8983 -0.0023 14 6 5.5786 -4.9363 -0.0019 15 8 6.2227 -6.1296 -0.0024 16 6 7.5655 -6.1003 -0.1186 17 1 8.0866 -5.1543 -0.1236 18 6 8.2778 -7.2849 -0.2318 19 7 7.6432 -8.4370 -0.2263 20 14 10.1383 -7.2442 -0.3935 21 1 10.6062 -5.8350 -0.3738 22 1 10.7499 -7.9843 0.7394 23 1 10.5380 -7.8812 -1.6741 24 6 6.3100 -3.7530 -0.0013 25 6 5.6592 -2.5396 -0.0006 26 7 2.1981 -1.1807 -0.0010 27 1 1.7102 -2.0190 -0.0014 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6671 2.1094 -0.0004 32 1 6.2599 1.2538 0.4272 33 1 6.0086 4.3787 0.3450 34 1 7.5280 3.4238 0.7700 35 1 7.4814 2.3293 -1.5185 36 1 5.9620 3.2844 -1.9442 37 1 2.4513 -3.6595 0.0074 38 1 3.6234 -5.8189 -0.0024 39 1 8.1414 -9.2654 -0.3058 40 1 7.3894 -3.7861 -0.0006 41 1 6.2276 -1.6212 0.0003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243589536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:34 Heat of formation + Delta-G solvation = 82.031395 kcal Electronic energy + Delta-G solvation = -24045.213630 eV Core-core repulsion = 20506.078244 eV Total energy + Delta-G solvation = -3539.135385 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.76776 -39.17434 -37.16250 -36.74092 -34.86797 -33.59291 -32.52948 -30.91800 -30.05926 -29.27031 -27.84695 -25.77934 -23.77171 -23.00631 -22.11154 -21.93473 -20.86788 -19.96726 -18.57600 -18.27863 -17.34761 -17.05610 -16.46803 -15.47895 -15.18130 -14.76743 -14.56226 -14.23868 -13.97303 -13.90845 -13.46402 -13.42796 -13.34578 -13.00789 -12.92808 -12.73889 -12.32833 -12.06741 -11.93177 -11.58587 -11.40575 -11.30658 -11.14942 -10.93352 -10.59123 -10.41378 -10.26653 -9.83176 -9.69760 -9.55133 -9.05678 -8.83052 -8.51647 -7.54171 -7.16403 -6.75335 -4.30048 0.95479 1.40820 2.00511 2.34671 2.77626 2.99229 3.01041 3.06910 3.74915 3.80639 4.09955 4.32457 4.40009 4.47911 4.60746 4.81060 4.90174 4.91215 5.11151 5.21748 5.25202 5.31069 5.34587 5.43776 5.49507 5.51113 5.63904 5.82237 5.84295 5.91334 6.00237 6.14800 6.27706 6.29773 6.35968 6.40739 6.58186 6.68266 6.74194 6.91119 7.02057 7.14723 7.21708 7.46555 7.70232 8.30967 8.47996 8.69500 9.33278 10.40692 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.013889 B = 0.003244 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.556228 B = 8629.692409 C =10558.075464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.137 3.863 3 C -0.208 4.208 4 C 0.367 3.633 5 N -0.549 5.549 6 C 0.029 3.971 7 C -0.171 4.171 8 C -0.180 4.180 9 N -0.582 5.582 10 C 0.484 3.516 11 C -0.193 4.193 12 C -0.044 4.044 13 C -0.193 4.193 14 C 0.172 3.828 15 O -0.157 6.157 16 C -0.392 4.392 17 H 0.101 0.899 18 C 0.043 3.957 19 N -0.848 5.848 20 Si 0.946 3.054 21 H -0.263 1.263 22 H -0.273 1.273 23 H -0.273 1.273 24 C -0.245 4.245 25 C 0.006 3.994 26 N -0.638 5.638 27 H 0.413 0.587 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.145 0.855 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.275 0.725 40 H 0.135 0.865 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.846 11.769 0.054 16.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.030 3.970 3 C -0.238 4.238 4 C 0.093 3.907 5 N -0.273 5.273 6 C -0.084 4.084 7 C -0.208 4.208 8 C -0.218 4.218 9 N -0.311 5.311 10 C 0.219 3.781 11 C -0.197 4.197 12 C -0.065 4.065 13 C -0.213 4.213 14 C 0.114 3.886 15 O -0.056 6.056 16 C -0.467 4.467 17 H 0.118 0.882 18 C -0.164 4.164 19 N -0.480 5.480 20 Si 0.769 3.231 21 H -0.187 1.187 22 H -0.198 1.198 23 H -0.198 1.198 24 C -0.264 4.264 25 C -0.014 4.014 26 N -0.258 5.258 27 H 0.250 0.750 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.163 0.837 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.143 0.857 39 H 0.085 0.915 40 H 0.152 0.848 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.974 12.569 0.062 16.045 hybrid contribution 0.266 -0.988 -0.096 1.027 sum -9.708 11.581 -0.034 15.112 Atomic orbital electron populations 1.20916 0.87863 1.04463 1.03929 1.20339 0.94439 0.85314 0.96922 1.21885 0.92675 0.97162 1.12068 1.21126 0.90947 0.87442 0.91152 1.73199 1.04459 1.22821 1.26832 1.22006 0.89028 0.95556 1.01773 1.22922 1.01222 0.97246 0.99441 1.23020 1.01991 1.04863 0.91921 1.69596 1.35028 0.97058 1.29418 1.21065 0.78648 0.94258 0.84173 1.17646 0.93565 0.87460 1.21052 1.20510 0.97629 0.91238 0.97094 1.20032 0.91690 0.97662 1.11878 1.19584 0.91853 0.86196 0.90936 1.83907 1.22306 1.24743 1.74684 1.21592 0.78145 0.95211 1.51772 0.88203 1.25427 1.01214 0.94000 0.95762 1.70021 1.36943 0.97797 1.43220 0.85565 0.79608 0.79323 0.78573 1.18680 1.19820 1.19801 1.21151 1.01048 0.91541 1.12703 1.20865 0.92268 0.97454 0.90861 1.42490 1.06744 1.08813 1.67719 0.74960 0.89646 0.90594 0.89149 0.83706 0.88558 0.88964 0.89198 0.89218 0.89278 0.87125 0.85689 0.91474 0.84755 0.85499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.14 36.00 0.37 -0.26 16 2 C 0.14 1.40 6.85 -81.59 -0.56 0.84 16 3 C -0.21 -2.73 9.93 -37.28 -0.37 -3.10 16 4 C 0.37 6.29 7.60 -155.97 -1.19 5.10 16 5 N -0.55 -9.91 10.87 -52.72 -0.57 -10.49 16 6 C 0.03 0.49 6.23 -67.93 -0.42 0.07 16 7 C -0.17 -2.41 10.46 -26.69 -0.28 -2.69 16 8 C -0.18 -2.64 10.46 -26.69 -0.28 -2.92 16 9 N -0.58 -10.16 8.22 -9.07 -0.07 -10.23 16 10 C 0.48 7.37 7.62 -154.96 -1.18 6.19 16 11 C -0.19 -3.12 5.88 -104.93 -0.62 -3.74 16 12 C -0.04 -0.65 9.51 -39.22 -0.37 -1.03 16 13 C -0.19 -3.47 9.97 -39.46 -0.39 -3.86 16 14 C 0.17 3.71 6.66 -38.94 -0.26 3.45 16 15 O -0.16 -4.04 9.75 0.55 0.01 -4.04 16 16 C -0.39 -10.01 9.48 30.90 0.29 -9.72 16 17 H 0.10 2.36 5.19 -52.49 -0.27 2.08 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.85 -22.91 13.67 55.48 0.76 -22.15 16 20 Si 0.95 18.99 29.55 -169.99 -5.02 13.97 16 21 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 C -0.24 -4.88 9.15 -39.46 -0.36 -5.24 16 25 C 0.01 0.10 9.55 -39.22 -0.37 -0.27 16 26 N -0.64 -7.16 5.27 -7.00 -0.04 -7.19 16 27 H 0.41 3.39 6.61 -40.82 -0.27 3.12 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.15 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.10 1.74 7.53 -51.93 -0.39 1.35 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.11 1.14 6.31 -52.49 -0.33 0.81 16 38 H 0.13 2.10 8.06 -52.49 -0.42 1.67 16 39 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.13 2.68 5.62 -52.49 -0.29 2.39 16 41 H 0.13 2.22 7.50 -52.49 -0.39 1.83 16 LS Contribution 353.75 15.07 5.33 5.33 Total: -1.00 -31.07 353.75 -10.60 -41.67 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -4.89 Total: 9.31 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -6.09 Total: -16.17 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.07 Total: -50.06 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: 0.01 Total: -4.04 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.07 -10.60 -41.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.699 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds