Wall clock time and date at job start Fri Apr 10 2020 22:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34800 * 120.34447 * 2 1 4 4 C 1.46933 * 118.36893 * 179.97438 * 3 2 1 5 5 N 1.31972 * 120.55435 * 180.02562 * 4 3 2 6 6 C 1.46496 * 120.00030 * 179.97438 * 5 4 3 7 7 C 1.53000 * 117.49891 * 188.74943 * 6 5 4 8 8 C 1.53006 * 117.49697 * 120.09000 * 6 5 4 9 9 N 1.34995 * 118.89811 * 0.02562 * 4 3 2 10 10 C 1.31373 * 120.53823 * 0.02562 * 9 4 3 11 11 C 1.47643 * 119.10286 * 179.97438 * 10 9 4 12 12 C 1.39734 * 120.07597 * 179.72312 * 11 10 9 13 13 C 1.37698 * 119.92280 * 179.73960 * 12 11 10 14 14 C 1.39100 * 120.07495 * 0.53040 * 13 12 11 15 15 O 1.35604 * 119.92570 * 179.74045 * 14 13 12 16 16 C 1.34811 * 117.00513 * 174.42800 * 15 14 13 17 17 H 1.08001 * 119.99727 * 5.05646 * 16 15 14 18 18 C 1.38689 * 120.00267 * 185.05849 * 16 15 14 19 19 N 1.31522 * 120.00267 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99848 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47362 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46951 * 120.00300 * 20 18 16 23 23 H 1.48508 * 109.47457 * 239.99926 * 20 18 16 24 24 C 1.39105 * 120.15507 * 359.72123 * 14 13 12 25 25 C 1.37692 * 120.07371 * 0.02562 * 24 14 13 26 26 N 1.36307 * 121.79272 * 359.97438 * 10 9 4 27 27 H 0.96996 * 119.45162 * 180.02562 * 26 10 9 28 28 H 1.09001 * 109.47571 * 89.99694 * 1 2 3 29 29 H 1.08994 * 109.47472 * 209.99812 * 1 2 3 30 30 H 1.09001 * 109.47139 * 330.00095 * 1 2 3 31 31 H 1.08002 * 120.81793 * 359.97438 * 3 2 1 32 32 H 1.09001 * 115.55213 * 334.42306 * 6 5 4 33 33 H 1.08999 * 117.49684 * 0.02562 * 7 6 5 34 34 H 1.09000 * 117.50264 * 145.02349 * 7 6 5 35 35 H 1.09001 * 117.50029 * 214.97912 * 8 6 5 36 36 H 1.08996 * 117.49592 * 0.02562 * 8 6 5 37 37 H 1.07998 * 120.03955 * 0.02562 * 12 11 10 38 38 H 1.07999 * 119.96369 * 180.23463 * 13 12 11 39 39 H 0.96999 * 120.00138 * 179.97438 * 19 18 16 40 40 H 1.07997 * 119.96427 * 179.97438 * 24 14 13 41 41 H 1.08002 * 120.04117 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1880 1.1633 0.0000 4 6 3.6564 1.1127 0.0006 5 7 4.3661 2.2254 0.0011 6 6 5.8296 2.1607 0.0022 7 6 6.5944 3.4696 0.2093 8 6 6.5663 2.8093 -1.1715 9 7 4.2677 -0.0910 0.0006 10 6 3.5611 -1.1985 -0.0005 11 6 4.2623 -2.4977 -0.0010 12 6 3.5309 -3.6883 0.0037 13 6 4.1881 -4.8983 -0.0023 14 6 5.5786 -4.9363 -0.0019 15 8 6.2227 -6.1296 -0.0024 16 6 7.5655 -6.1003 -0.1186 17 1 8.0866 -5.1543 -0.1236 18 6 8.2778 -7.2849 -0.2318 19 7 7.6432 -8.4370 -0.2263 20 14 10.1383 -7.2442 -0.3935 21 1 10.6062 -5.8350 -0.3738 22 1 10.7499 -7.9843 0.7394 23 1 10.5380 -7.8812 -1.6741 24 6 6.3100 -3.7530 -0.0013 25 6 5.6592 -2.5396 -0.0006 26 7 2.1981 -1.1807 -0.0010 27 1 1.7102 -2.0190 -0.0014 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6671 2.1094 -0.0004 32 1 6.2599 1.2538 0.4272 33 1 6.0086 4.3787 0.3450 34 1 7.5280 3.4238 0.7700 35 1 7.4814 2.3293 -1.5185 36 1 5.9620 3.2844 -1.9442 37 1 2.4513 -3.6595 0.0074 38 1 3.6234 -5.8189 -0.0024 39 1 8.1414 -9.2654 -0.3058 40 1 7.3894 -3.7861 -0.0006 41 1 6.2276 -1.6212 0.0003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243589536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:33 Heat of formation + Delta-G solvation = 63.689093 kcal Electronic energy + Delta-G solvation = -24046.009012 eV Core-core repulsion = 20506.078244 eV Total energy + Delta-G solvation = -3539.930767 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.93489 -40.73983 -38.47646 -38.14006 -36.00309 -34.82150 -34.20763 -32.25199 -31.34461 -30.63358 -28.67770 -27.53512 -25.13272 -24.20986 -23.35485 -23.22810 -22.24099 -21.20306 -19.94373 -19.69775 -18.81851 -18.29314 -17.75520 -16.77834 -16.38769 -16.23259 -16.15710 -15.64635 -15.41205 -15.23154 -14.71220 -14.48031 -14.28779 -14.19653 -14.07703 -13.73948 -13.61318 -13.38055 -13.11617 -12.93502 -12.82577 -12.58419 -12.47833 -12.42693 -12.12636 -11.63152 -11.45562 -11.31970 -11.03461 -10.87366 -10.66898 -10.09228 -9.96922 -9.05103 -8.56139 -8.37611 -6.22124 -0.36822 0.44067 0.51718 0.96324 1.36136 1.43031 1.53014 1.73900 2.12880 2.53866 2.83349 3.06321 3.08522 3.18125 3.31733 3.34141 3.72422 3.97356 4.00708 4.02153 4.12599 4.24871 4.27559 4.38054 4.45674 4.52419 4.65916 4.68793 4.77932 4.79446 4.84523 4.93413 5.04719 5.09127 5.14183 5.19224 5.23020 5.28065 5.34808 5.52034 5.58433 5.68833 5.92455 5.94767 6.22929 6.88868 7.09702 7.24316 7.61657 8.65291 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.013889 B = 0.003244 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.556228 B = 8629.692409 C =10558.075464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.166 3.834 3 C -0.240 4.240 4 C 0.350 3.650 5 N -0.578 5.578 6 C 0.001 3.999 7 C -0.154 4.154 8 C -0.175 4.175 9 N -0.608 5.608 10 C 0.480 3.520 11 C -0.172 4.172 12 C -0.021 4.021 13 C -0.197 4.197 14 C 0.146 3.854 15 O -0.209 6.209 16 C -0.417 4.417 17 H 0.105 0.895 18 C -0.012 4.012 19 N -0.907 5.907 20 Si 1.014 2.986 21 H -0.254 1.254 22 H -0.267 1.267 23 H -0.267 1.267 24 C -0.251 4.251 25 C -0.003 4.003 26 N -0.620 5.620 27 H 0.432 0.568 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.160 0.840 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.171 0.829 38 H 0.138 0.862 39 H 0.276 0.724 40 H 0.124 0.876 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.945 13.788 -0.009 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.058 3.942 3 C -0.270 4.270 4 C 0.077 3.923 5 N -0.303 5.303 6 C -0.111 4.111 7 C -0.191 4.191 8 C -0.213 4.213 9 N -0.338 5.338 10 C 0.212 3.788 11 C -0.176 4.176 12 C -0.040 4.040 13 C -0.216 4.216 14 C 0.092 3.908 15 O -0.113 6.113 16 C -0.492 4.492 17 H 0.122 0.878 18 C -0.212 4.212 19 N -0.543 5.543 20 Si 0.834 3.166 21 H -0.177 1.177 22 H -0.192 1.192 23 H -0.192 1.192 24 C -0.270 4.270 25 C -0.023 4.023 26 N -0.240 5.240 27 H 0.273 0.727 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.177 0.823 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.188 0.812 38 H 0.156 0.844 39 H 0.086 0.914 40 H 0.141 0.859 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.129 14.630 0.002 19.657 hybrid contribution 0.826 -1.204 -0.058 1.461 sum -12.302 13.427 -0.056 18.211 Atomic orbital electron populations 1.21126 0.83476 1.06485 1.05729 1.21038 0.96631 0.83696 0.92829 1.22008 0.90757 0.99187 1.15010 1.21703 0.92946 0.86954 0.90713 1.73200 1.04752 1.23562 1.28834 1.22050 0.89256 0.96076 1.03755 1.22986 1.01294 0.95922 0.98925 1.23047 1.01906 1.04464 0.91855 1.69507 1.36859 0.97996 1.29403 1.20749 0.80380 0.93057 0.84591 1.17917 0.93024 0.88896 1.17727 1.20993 1.00356 0.88929 0.93749 1.20387 0.90326 0.99652 1.11217 1.20180 0.93510 0.85765 0.91324 1.83898 1.22361 1.26481 1.78562 1.21922 0.78821 0.95726 1.52766 0.87790 1.26523 1.05910 0.93429 0.95348 1.70132 1.38763 0.98483 1.46946 0.84581 0.73711 0.79649 0.78688 1.17717 1.19209 1.19208 1.21158 1.00812 0.92041 1.13036 1.20923 0.93565 0.96566 0.91229 1.42472 1.05307 1.10435 1.65768 0.72688 0.87666 0.88070 0.87675 0.82282 0.90691 0.88737 0.87412 0.88179 0.89599 0.81199 0.84404 0.91423 0.85861 0.85520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.14 71.24 0.72 0.20 16 2 C 0.17 2.60 6.85 40.99 0.28 2.88 16 3 C -0.24 -5.61 9.93 23.76 0.24 -5.38 16 4 C 0.35 11.59 7.60 136.57 1.04 12.63 16 5 N -0.58 -20.80 10.87 -320.72 -3.49 -24.28 16 6 C 0.00 0.05 6.23 44.99 0.28 0.33 16 7 C -0.15 -4.22 10.46 30.62 0.32 -3.90 16 8 C -0.17 -5.06 10.46 30.62 0.32 -4.74 16 9 N -0.61 -20.52 8.22 -182.62 -1.50 -22.02 16 10 C 0.48 13.17 7.62 136.54 1.04 14.21 16 11 C -0.17 -5.13 5.88 -20.07 -0.12 -5.25 16 12 C -0.02 -0.53 9.51 22.50 0.21 -0.31 16 13 C -0.20 -6.77 9.97 22.35 0.22 -6.55 16 14 C 0.15 6.47 6.66 22.69 0.15 6.62 16 15 O -0.21 -11.44 9.75 -20.94 -0.20 -11.64 16 16 C -0.42 -22.64 9.48 67.93 0.64 -21.99 16 17 H 0.10 5.25 5.19 -2.91 -0.02 5.23 16 18 C -0.01 -0.65 5.49 84.85 0.47 -0.19 16 19 N -0.91 -52.01 13.67 21.62 0.30 -51.72 16 20 Si 1.01 40.63 29.55 68.60 2.03 42.66 16 21 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 22 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 23 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 24 C -0.25 -10.33 9.15 22.35 0.20 -10.13 16 25 C 0.00 -0.09 9.55 22.51 0.21 0.12 16 26 N -0.62 -10.79 5.27 -176.05 -0.93 -11.72 16 27 H 0.43 4.18 6.61 -92.71 -0.61 3.56 16 28 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.10 0.32 8.08 -2.39 -0.02 0.31 16 31 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 32 H 0.08 2.81 7.53 -2.39 -0.02 2.79 16 33 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.09 2.51 8.14 -2.39 -0.02 2.50 16 37 H 0.17 2.33 6.31 -2.91 -0.02 2.31 16 38 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 39 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 40 H 0.12 5.26 5.62 -2.91 -0.02 5.24 16 41 H 0.13 4.53 7.50 -2.91 -0.02 4.51 16 Total: -1.00 -75.51 353.75 2.90 -72.60 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.47 Total: 27.57 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 6.24 Total: -21.45 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -5.62 Total: -109.74 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.20 Total: -11.64 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -75.51 2.90 -72.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.293 kcal (2) G-P(sol) polarization free energy of solvation -75.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds