Wall clock time and date at job start Fri Apr 10 2020 22:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86799 * 119.99795 * 2 1 4 4 H 1.48502 * 109.47148 * 264.71358 * 3 2 1 5 5 H 1.48496 * 109.47439 * 24.71167 * 3 2 1 6 6 H 1.48493 * 109.46978 * 144.71475 * 3 2 1 7 7 C 1.40172 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99672 * 350.65334 * 7 2 1 9 9 C 1.40796 * 120.00133 * 170.65096 * 7 2 1 10 10 N 1.33973 * 120.28494 * 343.08178 * 9 7 2 11 11 C 1.31604 * 119.89968 * 180.27059 * 10 9 7 12 12 C 1.39204 * 120.50084 * 359.45438 * 11 10 9 13 13 N 1.32005 * 120.59033 * 0.25421 * 12 11 10 14 14 C 1.32866 * 120.07439 * 0.02562 * 13 12 11 15 15 C 1.47796 * 120.24292 * 180.02562 * 14 13 12 16 16 C 1.39697 * 120.15042 * 135.65321 * 15 14 13 17 17 C 1.37908 * 119.84364 * 179.78979 * 16 15 14 18 18 C 1.38413 * 120.15299 * 0.48179 * 17 16 15 19 19 C 1.50700 * 119.84330 * 179.72300 * 18 17 16 20 20 N 1.46899 * 109.46927 * 270.02516 * 19 18 17 21 21 C 1.47487 * 111.00048 * 265.97088 * 20 19 18 22 22 C 1.53510 * 87.93266 * 221.30034 * 21 20 19 23 23 O 1.42905 * 114.16741 * 272.37836 * 22 21 20 24 24 C 1.47483 * 110.99915 * 170.00237 * 20 19 18 25 25 C 1.38404 * 120.30924 * 359.74888 * 18 17 16 26 26 C 1.37910 * 120.15405 * 0.02562 * 25 18 17 27 27 H 0.97003 * 120.00336 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.75063 * 179.73216 * 11 10 9 29 29 H 1.07995 * 119.70222 * 180.27775 * 12 11 10 30 30 H 1.07998 * 120.07654 * 0.02562 * 16 15 14 31 31 H 1.07994 * 119.92363 * 180.25485 * 17 16 15 32 32 H 1.09000 * 109.47202 * 30.02263 * 19 18 17 33 33 H 1.08995 * 109.47068 * 150.02664 * 19 18 17 34 34 H 1.09001 * 113.47197 * 336.06568 * 21 20 19 35 35 H 1.08998 * 113.47300 * 106.53121 * 21 20 19 36 36 H 1.08990 * 114.17215 * 139.67290 * 22 21 20 37 37 H 0.96702 * 113.99590 * 273.83996 * 23 22 21 38 38 H 1.09001 * 113.47587 * 253.46988 * 24 20 19 39 39 H 1.09001 * 113.47640 * 23.93538 * 24 20 19 40 40 H 1.07991 * 119.92296 * 179.97438 * 25 18 17 41 41 H 1.08003 * 120.08160 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.6000 1.9820 -1.3941 5 1 1.3869 2.6824 0.5853 6 1 3.4779 1.4750 0.8087 7 6 2.0077 -1.2139 -0.0005 8 1 1.4784 -2.1431 0.1509 9 6 3.4016 -1.2219 -0.1986 10 7 4.0168 -0.1498 -0.7153 11 6 5.3194 -0.1675 -0.9022 12 6 6.0676 -1.2893 -0.5564 13 7 5.4824 -2.3542 -0.0406 14 6 4.1680 -2.3635 0.1529 15 6 3.5090 -3.5536 0.7307 16 6 2.5434 -3.4055 1.7293 17 6 1.9294 -4.5200 2.2609 18 6 2.2750 -5.7837 1.8144 19 6 1.6041 -6.9972 2.4046 20 7 2.3716 -7.4643 3.5668 21 6 3.3308 -8.5153 3.1790 22 6 2.9499 -9.2602 4.4661 23 8 3.7151 -8.8787 5.6112 24 6 1.6270 -8.4968 4.3116 25 6 3.2343 -5.9381 0.8287 26 6 3.8530 -4.8320 0.2849 27 1 -0.4851 0.8400 -0.0004 28 1 5.8123 0.6965 -1.3229 29 1 7.1364 -1.2881 -0.7111 30 1 2.2756 -2.4203 2.0814 31 1 1.1798 -4.4068 3.0301 32 1 0.5929 -6.7371 2.7177 33 1 1.5606 -7.7884 1.6562 34 1 3.0487 -9.0467 2.2701 35 1 4.3660 -8.1745 3.1648 36 1 2.8588 -10.3397 4.3468 37 1 4.5478 -9.3611 5.7061 38 1 1.2183 -8.1403 5.2571 39 1 0.8902 -9.0233 3.7049 40 1 3.4995 -6.9270 0.4852 41 1 4.6011 -4.9538 -0.4845 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243636551.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:38 Heat of formation + Delta-G solvation = 49.988546 kcal Electronic energy + Delta-G solvation = -24593.410827 eV Core-core repulsion = 21052.885960 eV Total energy + Delta-G solvation = -3540.524867 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.45726 -39.55741 -38.14634 -35.79695 -34.23863 -33.19166 -32.20406 -30.56882 -30.17509 -27.95380 -26.27734 -26.15434 -24.48870 -22.73841 -22.00334 -21.56961 -20.24950 -20.20355 -17.94326 -17.63419 -16.44506 -16.30815 -16.09875 -15.61517 -15.43192 -15.11614 -14.41646 -14.18056 -13.84053 -13.58815 -13.36224 -13.23679 -13.15574 -12.85755 -12.68930 -12.42335 -12.03433 -11.82619 -11.68170 -11.42130 -11.35092 -11.02345 -10.86603 -10.73294 -10.40649 -10.32260 -10.10334 -9.85775 -9.55908 -9.28695 -8.94095 -8.47675 -8.22323 -7.79806 -7.46322 -7.13871 -4.90237 1.62297 2.11988 2.31370 2.64383 3.28453 3.36158 3.42941 3.63380 4.00680 4.16807 4.27916 4.37474 4.51063 4.65715 4.88957 5.09664 5.15906 5.22362 5.27624 5.30277 5.39981 5.55376 5.57828 5.58603 5.66230 5.69031 5.75982 5.94876 6.08634 6.14280 6.20979 6.34138 6.43107 6.55375 6.67280 6.75006 6.90912 6.92979 7.06304 7.19520 7.39385 7.40837 7.47075 7.65837 7.89741 8.18145 8.27203 8.84069 9.29300 9.74267 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.019851 B = 0.003377 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.142600 B = 8290.068070 C = 9177.552168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.080 3.920 3 Si 0.991 3.009 4 H -0.270 1.270 5 H -0.321 1.321 6 H -0.266 1.266 7 C -0.382 4.382 8 H 0.113 0.887 9 C 0.204 3.796 10 N -0.538 5.538 11 C 0.108 3.892 12 C -0.115 4.115 13 N -0.405 5.405 14 C -0.001 4.001 15 C 0.019 3.981 16 C -0.092 4.092 17 C -0.104 4.104 18 C -0.093 4.093 19 C 0.062 3.938 20 N -0.451 5.451 21 C -0.032 4.032 22 C 0.074 3.926 23 O -0.537 6.537 24 C 0.000 4.000 25 C -0.119 4.119 26 C -0.106 4.106 27 H 0.294 0.706 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.380 0.620 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 -14.491 5.136 15.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.145 4.145 3 Si 0.824 3.176 4 H -0.196 1.196 5 H -0.253 1.253 6 H -0.192 1.192 7 C -0.412 4.412 8 H 0.131 0.869 9 C 0.081 3.919 10 N -0.259 5.259 11 C -0.059 4.059 12 C -0.274 4.274 13 N -0.117 5.117 14 C -0.149 4.149 15 C 0.017 3.983 16 C -0.111 4.111 17 C -0.123 4.123 18 C -0.094 4.094 19 C -0.066 4.066 20 N -0.173 5.173 21 C -0.162 4.162 22 C 0.014 3.986 23 O -0.342 6.342 24 C -0.129 4.129 25 C -0.138 4.138 26 C -0.125 4.125 27 H 0.105 0.895 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.151 0.849 31 H 0.133 0.867 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.227 0.773 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.532 -13.386 5.521 14.561 hybrid contribution 0.494 -0.215 -0.901 1.050 sum 2.026 -13.601 4.620 14.507 Atomic orbital electron populations 1.69580 1.08638 1.31677 1.29942 1.26497 0.94994 1.03673 0.89351 0.84704 0.77167 0.75559 0.80162 1.19599 1.25308 1.19202 1.19729 0.89276 0.96367 1.35824 0.86947 1.19218 0.94496 0.87824 0.90378 1.67681 1.09918 1.28027 1.20246 1.23193 0.91048 0.97495 0.94213 1.22499 0.99644 0.92678 1.12538 1.67754 1.10434 1.26353 1.07113 1.20075 0.89533 0.95971 1.09344 1.18281 0.94664 0.91049 0.94311 1.21408 0.95345 0.99133 0.95180 1.20778 1.00197 0.91651 0.99628 1.19416 0.98653 0.93727 0.97580 1.21613 0.97218 0.95637 0.92110 1.69097 1.09278 1.22532 1.16349 1.24626 1.00608 0.93534 0.97423 1.22805 0.93396 0.96250 0.86146 1.86543 1.36551 1.66709 1.44348 1.23968 0.95144 0.93162 1.00590 1.20674 0.97481 0.97711 0.97908 1.21119 0.99585 0.91624 1.00150 0.89548 0.84557 0.84666 0.84950 0.86685 0.90196 0.93236 0.90748 0.89224 0.90836 0.77327 0.88915 0.90227 0.87484 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.52 13.92 55.56 0.77 -18.75 16 2 C 0.08 2.04 5.52 -17.31 -0.10 1.94 16 3 Si 0.99 23.08 25.45 -169.99 -4.33 18.75 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.32 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.27 -6.48 6.68 56.52 0.38 -6.10 16 7 C -0.38 -9.89 7.78 -37.89 -0.29 -10.19 16 8 H 0.11 2.96 5.99 -52.49 -0.31 2.65 16 9 C 0.20 5.24 6.15 -84.56 -0.52 4.72 16 10 N -0.54 -13.42 5.39 -10.73 -0.06 -13.47 16 11 C 0.11 2.34 11.22 -17.29 -0.19 2.14 16 12 C -0.11 -2.45 11.22 -17.12 -0.19 -2.64 16 13 N -0.40 -9.55 10.31 -8.97 -0.09 -9.64 16 14 C 0.00 -0.01 6.42 -82.11 -0.53 -0.54 16 15 C 0.02 0.41 5.25 -104.90 -0.55 -0.14 16 16 C -0.09 -1.91 7.63 -39.16 -0.30 -2.21 16 17 C -0.10 -1.89 9.68 -39.64 -0.38 -2.27 16 18 C -0.09 -1.52 5.47 -104.50 -0.57 -2.10 16 19 C 0.06 0.80 4.93 -4.98 -0.02 0.77 16 20 N -0.45 -5.77 6.32 -246.09 -1.55 -7.33 16 21 C -0.03 -0.33 7.55 -7.54 -0.06 -0.39 16 22 C 0.07 0.65 5.56 -26.20 -0.15 0.51 16 23 O -0.54 -5.44 13.71 -35.23 -0.48 -5.92 16 24 C 0.00 0.00 7.52 -7.54 -0.06 -0.05 16 25 C -0.12 -2.00 9.68 -39.64 -0.38 -2.38 16 26 C -0.11 -2.07 9.68 -39.16 -0.38 -2.44 16 27 H 0.29 6.70 8.29 -40.82 -0.34 6.36 16 28 H 0.14 2.42 8.06 -52.49 -0.42 2.00 16 29 H 0.14 2.42 8.06 -52.49 -0.42 1.99 16 30 H 0.13 2.90 6.79 -52.49 -0.36 2.55 16 31 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 32 H 0.08 0.97 8.02 -51.93 -0.42 0.56 16 33 H 0.05 0.55 7.24 -51.93 -0.38 0.18 16 34 H 0.07 0.64 7.42 -51.93 -0.39 0.26 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.38 2.03 9.12 45.56 0.42 2.44 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 0.61 7.91 -51.93 -0.41 0.20 16 40 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 41 H 0.12 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 342.76 15.07 5.17 5.17 Total: -1.00 -31.02 342.76 -9.63 -40.65 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -4.38 Total: 5.83 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -4.67 Total: -15.28 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.93 Total: -49.20 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.48 Total: -5.92 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.33 Total: 18.75 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.02 -9.63 -40.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243636551.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.640 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds