Wall clock time and date at job start Fri Apr 10 2020 22:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86799 * 119.99795 * 2 1 4 4 H 1.48502 * 109.47148 * 264.71358 * 3 2 1 5 5 H 1.48496 * 109.47439 * 24.71167 * 3 2 1 6 6 H 1.48493 * 109.46978 * 144.71475 * 3 2 1 7 7 C 1.40172 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99672 * 350.65334 * 7 2 1 9 9 C 1.40796 * 120.00133 * 170.65096 * 7 2 1 10 10 N 1.33973 * 120.28494 * 343.08178 * 9 7 2 11 11 C 1.31604 * 119.89968 * 180.27059 * 10 9 7 12 12 C 1.39204 * 120.50084 * 359.45438 * 11 10 9 13 13 N 1.32005 * 120.59033 * 0.25421 * 12 11 10 14 14 C 1.32866 * 120.07439 * 0.02562 * 13 12 11 15 15 C 1.47796 * 120.24292 * 180.02562 * 14 13 12 16 16 C 1.39697 * 120.15042 * 135.65321 * 15 14 13 17 17 C 1.37908 * 119.84364 * 179.78979 * 16 15 14 18 18 C 1.38413 * 120.15299 * 0.48179 * 17 16 15 19 19 C 1.50700 * 119.84330 * 179.72300 * 18 17 16 20 20 N 1.46899 * 109.46927 * 270.02516 * 19 18 17 21 21 C 1.47487 * 111.00048 * 265.97088 * 20 19 18 22 22 C 1.53510 * 87.93266 * 221.30034 * 21 20 19 23 23 O 1.42905 * 114.16741 * 272.37836 * 22 21 20 24 24 C 1.47483 * 110.99915 * 170.00237 * 20 19 18 25 25 C 1.38404 * 120.30924 * 359.74888 * 18 17 16 26 26 C 1.37910 * 120.15405 * 0.02562 * 25 18 17 27 27 H 0.97003 * 120.00336 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.75063 * 179.73216 * 11 10 9 29 29 H 1.07995 * 119.70222 * 180.27775 * 12 11 10 30 30 H 1.07998 * 120.07654 * 0.02562 * 16 15 14 31 31 H 1.07994 * 119.92363 * 180.25485 * 17 16 15 32 32 H 1.09000 * 109.47202 * 30.02263 * 19 18 17 33 33 H 1.08995 * 109.47068 * 150.02664 * 19 18 17 34 34 H 1.09001 * 113.47197 * 336.06568 * 21 20 19 35 35 H 1.08998 * 113.47300 * 106.53121 * 21 20 19 36 36 H 1.08990 * 114.17215 * 139.67290 * 22 21 20 37 37 H 0.96702 * 113.99590 * 273.83996 * 23 22 21 38 38 H 1.09001 * 113.47587 * 253.46988 * 24 20 19 39 39 H 1.09001 * 113.47640 * 23.93538 * 24 20 19 40 40 H 1.07991 * 119.92296 * 179.97438 * 25 18 17 41 41 H 1.08003 * 120.08160 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.6000 1.9820 -1.3941 5 1 1.3869 2.6824 0.5853 6 1 3.4779 1.4750 0.8087 7 6 2.0077 -1.2139 -0.0005 8 1 1.4784 -2.1431 0.1509 9 6 3.4016 -1.2219 -0.1986 10 7 4.0168 -0.1498 -0.7153 11 6 5.3194 -0.1675 -0.9022 12 6 6.0676 -1.2893 -0.5564 13 7 5.4824 -2.3542 -0.0406 14 6 4.1680 -2.3635 0.1529 15 6 3.5090 -3.5536 0.7307 16 6 2.5434 -3.4055 1.7293 17 6 1.9294 -4.5200 2.2609 18 6 2.2750 -5.7837 1.8144 19 6 1.6041 -6.9972 2.4046 20 7 2.3716 -7.4643 3.5668 21 6 3.3308 -8.5153 3.1790 22 6 2.9499 -9.2602 4.4661 23 8 3.7151 -8.8787 5.6112 24 6 1.6270 -8.4968 4.3116 25 6 3.2343 -5.9381 0.8287 26 6 3.8530 -4.8320 0.2849 27 1 -0.4851 0.8400 -0.0004 28 1 5.8123 0.6965 -1.3229 29 1 7.1364 -1.2881 -0.7111 30 1 2.2756 -2.4203 2.0814 31 1 1.1798 -4.4068 3.0301 32 1 0.5929 -6.7371 2.7177 33 1 1.5606 -7.7884 1.6562 34 1 3.0487 -9.0467 2.2701 35 1 4.3660 -8.1745 3.1648 36 1 2.8588 -10.3397 4.3468 37 1 4.5478 -9.3611 5.7061 38 1 1.2183 -8.1403 5.2571 39 1 0.8902 -9.0233 3.7049 40 1 3.4995 -6.9270 0.4852 41 1 4.6011 -4.9538 -0.4845 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243636551.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:37 Heat of formation + Delta-G solvation = 26.149488 kcal Electronic energy + Delta-G solvation = -24594.444566 eV Core-core repulsion = 21052.885960 eV Total energy + Delta-G solvation = -3541.558607 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.44469 -41.15439 -39.58314 -36.59458 -36.10153 -34.81772 -33.86268 -32.02545 -31.66332 -29.25417 -28.01326 -26.89521 -25.79018 -24.30556 -23.56333 -23.16486 -21.70427 -20.91569 -19.83446 -18.37165 -18.14788 -17.91352 -17.20758 -16.93876 -16.55366 -16.43256 -15.86873 -15.73018 -15.29870 -15.07616 -14.74851 -14.59010 -14.28310 -14.12538 -14.06930 -13.67438 -13.43706 -13.42173 -13.15385 -13.02450 -12.84169 -12.46063 -12.29207 -11.92063 -11.74149 -11.70673 -11.54126 -11.46089 -11.12783 -10.81879 -10.19153 -9.76923 -9.69594 -9.57706 -9.10903 -9.01923 -6.79317 0.00014 0.54936 0.63550 0.91014 1.39659 1.49864 1.55549 2.31024 2.51293 2.80905 3.07392 3.35030 3.47911 3.59798 3.65645 3.88469 3.92692 3.95499 4.03873 4.16446 4.20487 4.33861 4.43666 4.45707 4.57389 4.63484 4.66560 4.71932 4.73372 4.78072 4.83474 4.90027 5.01689 5.09208 5.17637 5.26621 5.39158 5.53509 5.70009 5.76052 5.86034 5.95427 6.09086 6.18823 6.35070 6.38936 6.95176 7.00977 7.46658 7.91185 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.019851 B = 0.003377 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.142600 B = 8290.068070 C = 9177.552168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.056 3.944 3 Si 1.037 2.963 4 H -0.273 1.273 5 H -0.307 1.307 6 H -0.284 1.284 7 C -0.409 4.409 8 H 0.094 0.906 9 C 0.190 3.810 10 N -0.558 5.558 11 C 0.097 3.903 12 C -0.101 4.101 13 N -0.422 5.422 14 C -0.014 4.014 15 C -0.016 4.016 16 C -0.107 4.107 17 C -0.112 4.112 18 C -0.081 4.081 19 C 0.066 3.934 20 N -0.488 5.488 21 C -0.034 4.034 22 C 0.082 3.918 23 O -0.565 6.565 24 C -0.001 4.001 25 C -0.111 4.111 26 C -0.112 4.112 27 H 0.303 0.697 28 H 0.180 0.820 29 H 0.178 0.822 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.398 0.602 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.144 0.856 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.205 -16.614 4.996 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.167 4.167 3 Si 0.869 3.131 4 H -0.199 1.199 5 H -0.238 1.238 6 H -0.211 1.211 7 C -0.440 4.440 8 H 0.112 0.888 9 C 0.066 3.934 10 N -0.280 5.280 11 C -0.069 4.069 12 C -0.260 4.260 13 N -0.134 5.134 14 C -0.161 4.161 15 C -0.018 4.018 16 C -0.126 4.126 17 C -0.130 4.130 18 C -0.082 4.082 19 C -0.062 4.062 20 N -0.211 5.211 21 C -0.163 4.163 22 C 0.022 3.978 23 O -0.373 6.373 24 C -0.129 4.129 25 C -0.129 4.129 26 C -0.131 4.131 27 H 0.114 0.886 28 H 0.197 0.803 29 H 0.195 0.805 30 H 0.126 0.874 31 H 0.145 0.855 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.128 0.872 37 H 0.248 0.752 38 H 0.097 0.903 39 H 0.125 0.875 40 H 0.161 0.839 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.623 -15.530 5.392 16.647 hybrid contribution 0.359 0.323 -0.829 0.959 sum 2.982 -15.206 4.563 16.154 Atomic orbital electron populations 1.69567 1.09044 1.32638 1.31515 1.26927 0.95471 1.05045 0.89229 0.84058 0.75763 0.73954 0.79374 1.19931 1.23819 1.21123 1.19612 0.89825 0.96094 1.38431 0.88809 1.19385 0.94663 0.88771 0.90570 1.67661 1.11672 1.28078 1.20611 1.23919 0.90151 0.99175 0.93642 1.23285 1.01543 0.91629 1.09581 1.67861 1.10101 1.27468 1.07970 1.20407 0.89910 0.96562 1.09207 1.18387 0.96069 0.91522 0.95781 1.21283 0.96239 0.99028 0.96068 1.20989 1.00270 0.91875 0.99881 1.19866 0.97520 0.94434 0.96369 1.21617 0.96976 0.94558 0.93009 1.69032 1.10677 1.24754 1.16629 1.24717 0.99202 0.93147 0.99232 1.22886 0.92155 0.97875 0.84893 1.86490 1.37944 1.67871 1.45031 1.24076 0.96181 0.92642 1.00002 1.21018 0.96460 0.98385 0.97067 1.21221 0.99998 0.91527 1.00403 0.88593 0.80270 0.80544 0.87443 0.85482 0.89685 0.90665 0.88451 0.90837 0.87222 0.75214 0.90322 0.87512 0.83860 0.86591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.83 13.92 21.86 0.30 -41.52 16 2 C 0.06 2.92 5.52 85.33 0.47 3.39 16 3 Si 1.04 48.28 25.45 68.60 1.75 50.02 16 4 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.31 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.28 -13.92 6.68 99.48 0.66 -13.25 16 7 C -0.41 -22.30 7.78 23.37 0.18 -22.11 16 8 H 0.09 5.32 5.99 -2.91 -0.02 5.30 16 9 C 0.19 10.06 6.15 40.35 0.25 10.31 16 10 N -0.56 -27.91 5.39 -187.85 -1.01 -28.92 16 11 C 0.10 4.03 11.22 84.96 0.95 4.99 16 12 C -0.10 -4.11 11.22 84.90 0.95 -3.15 16 13 N -0.42 -19.75 10.31 -182.29 -1.88 -21.63 16 14 C -0.01 -0.72 6.42 42.43 0.27 -0.45 16 15 C -0.02 -0.73 5.25 -20.04 -0.11 -0.84 16 16 C -0.11 -4.72 7.63 22.54 0.17 -4.55 16 17 C -0.11 -4.13 9.68 22.23 0.22 -3.91 16 18 C -0.08 -2.55 5.47 -19.78 -0.11 -2.66 16 19 C 0.07 1.52 4.93 85.56 0.42 1.95 16 20 N -0.49 -11.35 6.32 -932.89 -5.89 -17.24 16 21 C -0.03 -0.59 7.55 83.57 0.63 0.04 16 22 C 0.08 1.18 5.56 30.94 0.17 1.35 16 23 O -0.57 -10.35 13.71 -148.98 -2.04 -12.39 16 24 C 0.00 -0.01 7.52 83.58 0.63 0.62 16 25 C -0.11 -3.53 9.68 22.23 0.22 -3.31 16 26 C -0.11 -4.40 9.68 22.54 0.22 -4.18 16 27 H 0.30 14.15 8.29 -92.71 -0.77 13.38 16 28 H 0.18 5.76 8.06 -2.91 -0.02 5.74 16 29 H 0.18 5.62 8.06 -2.91 -0.02 5.60 16 30 H 0.11 5.16 6.79 -2.91 -0.02 5.14 16 31 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 32 H 0.08 1.87 8.02 -2.39 -0.02 1.85 16 33 H 0.08 1.36 7.24 -2.39 -0.02 1.34 16 34 H 0.10 1.23 7.42 -2.39 -0.02 1.21 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 36 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.40 3.46 9.12 -74.06 -0.68 2.79 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.11 1.20 7.91 -2.39 -0.02 1.19 16 40 H 0.14 3.48 8.06 -2.92 -0.02 3.46 16 41 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -69.78 342.76 -2.89 -72.66 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.35 Total: 21.54 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 5.54 Total: -22.52 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -8.48 Total: -109.31 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -2.04 Total: -12.39 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 1.75 Total: 50.02 kcal Total: -69.78 -2.89 -72.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243636551.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.810 kcal (2) G-P(sol) polarization free energy of solvation -69.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds