Wall clock time and date at job start Fri Apr 10 2020 22:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46897 * 113.95610 * 3 2 1 5 5 C 1.36937 * 120.00094 * 263.90488 * 4 3 2 6 6 H 1.07998 * 120.00073 * 199.39616 * 5 4 3 7 7 C 1.38811 * 119.99500 * 19.40802 * 5 4 3 8 8 N 1.31617 * 120.00287 * 22.26681 * 7 5 4 9 9 Si 1.86803 * 119.99645 * 202.26959 * 7 5 4 10 10 H 1.48502 * 109.47278 * 59.99945 * 9 7 5 11 11 H 1.48496 * 109.46980 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46992 * 299.99667 * 9 7 5 13 13 C 1.46510 * 119.99946 * 83.91271 * 4 3 2 14 14 C 1.52998 * 109.47287 * 89.99955 * 13 4 3 15 15 C 1.53002 * 109.47132 * 179.97438 * 14 13 4 16 16 C 1.50693 * 109.47082 * 179.97438 * 15 14 13 17 17 N 1.30984 * 126.43964 * 90.25206 * 16 15 14 18 18 C 1.35215 * 105.57805 * 180.11904 * 17 16 15 19 19 C 1.48426 * 126.41136 * 179.90469 * 18 17 16 20 20 C 1.39328 * 120.12023 * 179.71477 * 19 18 17 21 21 C 1.38018 * 119.87837 * 179.97438 * 20 19 18 22 22 C 1.38318 * 120.11962 * 0.02562 * 21 20 19 23 23 C 1.38319 * 120.24166 * 359.97438 * 22 21 20 24 24 C 1.38022 * 120.12252 * 0.02562 * 23 22 21 25 25 N 1.30758 * 107.17427 * 359.64518 * 18 17 16 26 26 O 1.21286 * 110.09784 * 0.22262 * 25 18 17 27 27 H 4.40637 * 5.51492 * 180.02562 * 4 1 2 28 28 H 1.08995 * 109.47605 * 353.95481 * 3 2 1 29 29 H 1.09007 * 109.46662 * 233.94990 * 3 2 1 30 30 H 0.97002 * 119.99471 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.46787 * 329.99467 * 13 4 3 32 32 H 1.09004 * 109.46473 * 209.99852 * 13 4 3 33 33 H 1.09002 * 109.47147 * 59.99396 * 14 13 4 34 34 H 1.09008 * 109.46755 * 299.99901 * 14 13 4 35 35 H 1.09001 * 109.46831 * 59.99579 * 15 14 13 36 36 H 1.08997 * 109.46814 * 300.00194 * 15 14 13 37 37 H 1.08002 * 120.05423 * 359.97438 * 20 19 18 38 38 H 1.07996 * 119.93825 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.87839 * 179.71972 * 22 21 20 40 40 H 1.08007 * 119.93843 * 180.02562 * 23 22 21 41 41 H 1.07996 * 120.06112 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.5617 -1.2623 5 6 3.4813 -0.2707 -2.2927 6 1 4.1196 0.0893 -3.0860 7 6 3.0127 -1.5770 -2.3175 8 7 1.9283 -1.9002 -1.6452 9 14 3.9211 -2.8765 -3.3053 10 1 5.3106 -3.0034 -2.7967 11 1 3.2234 -4.1801 -3.1681 12 1 3.9520 -2.4791 -4.7358 13 6 3.2507 2.0134 -1.4221 14 6 4.6436 2.4650 -0.9788 15 6 4.7656 3.9809 -1.1463 16 6 6.1373 4.4259 -0.7091 17 7 7.2019 4.5227 -1.4660 18 6 8.1899 4.9539 -0.6498 19 6 9.5986 5.2184 -1.0351 20 6 10.5113 5.6678 -0.0832 21 6 11.8202 5.9117 -0.4469 22 6 12.2262 5.7113 -1.7538 23 6 11.3243 5.2652 -2.7029 24 6 10.0130 5.0182 -2.3502 25 7 7.6706 5.0995 0.5414 26 8 6.4952 4.8008 0.5230 27 1 -1.0501 0.0001 0.0002 28 1 3.0098 -1.0210 0.1082 29 1 3.0090 0.6056 0.8309 30 1 1.6011 -2.8132 -1.6624 31 1 2.4963 2.5080 -0.8102 32 1 3.0993 2.2769 -2.4689 33 1 5.3979 1.9703 -1.5907 34 1 4.7949 2.2014 0.0681 35 1 4.0113 4.4759 -0.5347 36 1 4.6144 4.2441 -2.1932 37 1 10.1950 5.8250 0.9375 38 1 12.5285 6.2597 0.2903 39 1 13.2503 5.9077 -2.0352 40 1 11.6468 5.1100 -3.7220 41 1 9.3097 4.6695 -3.0919 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281463672.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:37 Heat of formation + Delta-G solvation = 169.002350 kcal Electronic energy + Delta-G solvation = -23714.307773 eV Core-core repulsion = 20178.943731 eV Total energy + Delta-G solvation = -3535.364042 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.53102 -39.39915 -36.72063 -35.87740 -34.57021 -32.36966 -31.55480 -31.27818 -30.93723 -30.04097 -26.77734 -25.88984 -24.87836 -23.71604 -22.64083 -22.30259 -20.91181 -20.49795 -18.07720 -17.92233 -17.48591 -16.79493 -16.32600 -15.84676 -15.41246 -14.97742 -14.73555 -14.39069 -13.91820 -13.72502 -13.65676 -13.45186 -13.38958 -13.02654 -12.60864 -12.40498 -11.79190 -11.71008 -11.60352 -11.50220 -11.31072 -11.26500 -11.07864 -10.98507 -10.77023 -10.38416 -10.21740 -10.08455 -9.98636 -9.27835 -8.93578 -8.90245 -8.74214 -8.44983 -6.99873 -5.79800 -3.22878 0.50040 1.07903 1.31527 2.37196 2.81572 3.37536 3.39978 3.44514 3.45797 3.56286 3.89805 4.16278 4.38307 4.53142 4.61639 4.64888 4.75879 4.91210 5.10050 5.16131 5.18960 5.27821 5.34235 5.39351 5.56851 5.68528 5.73496 5.81921 5.84270 5.88449 5.97250 6.13220 6.14112 6.17716 6.21230 6.33734 6.58886 6.65414 6.68392 6.88967 7.19405 7.41474 7.75360 8.11794 8.28361 9.09176 9.19660 9.76364 10.22558 11.23435 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.016538 B = 0.002694 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.695305 B =10391.466502 C =11647.355316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.096 4.096 3 C 0.268 3.732 4 N -0.586 5.586 5 C -0.269 4.269 6 H 0.074 0.926 7 C 0.006 3.994 8 N -0.886 5.886 9 Si 0.898 3.102 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.152 3.848 14 C -0.136 4.136 15 C -0.029 4.029 16 C 0.205 3.795 17 N -0.480 5.480 18 C 0.207 3.793 19 C -0.018 4.018 20 C -0.086 4.086 21 C -0.124 4.124 22 C -0.104 4.104 23 C -0.123 4.123 24 C -0.075 4.075 25 N -0.383 5.383 26 O 0.078 5.922 27 H 0.190 0.810 28 H 0.091 0.909 29 H 0.038 0.962 30 H 0.255 0.745 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.313 15.934 2.178 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 C -0.099 4.099 3 C 0.142 3.858 4 N -0.305 5.305 5 C -0.398 4.398 6 H 0.092 0.908 7 C -0.194 4.194 8 N -0.528 5.528 9 Si 0.727 3.273 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.209 1.209 13 C 0.024 3.976 14 C -0.177 4.177 15 C -0.069 4.069 16 C -0.015 4.015 17 N -0.212 5.212 18 C -0.063 4.063 19 C -0.020 4.020 20 C -0.106 4.106 21 C -0.142 4.142 22 C -0.123 4.123 23 C -0.141 4.141 24 C -0.095 4.095 25 N -0.090 5.090 26 O 0.019 5.981 27 H 0.207 0.793 28 H 0.109 0.891 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.128 0.872 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 14.898 15.997 2.493 22.001 hybrid contribution -0.059 -0.957 -0.609 1.136 sum 14.839 15.040 1.884 21.212 Atomic orbital electron populations 1.24181 0.95336 1.06797 1.05604 1.24277 0.95300 0.94912 0.95441 1.17730 0.82892 0.98987 0.86179 1.43998 1.74765 0.99869 1.11879 1.19131 1.24668 0.92538 1.03467 0.90778 1.24930 0.96039 0.98895 0.99518 1.70125 1.19295 1.18401 1.45017 0.86443 0.79652 0.81291 0.79874 1.21028 1.21739 1.20915 1.20712 0.92013 0.85555 0.99305 1.22366 1.02909 0.89789 1.02653 1.20458 0.83893 0.99065 1.03467 1.29091 0.99228 0.93304 0.79906 1.72016 0.98378 1.19908 1.30945 1.23900 0.96489 1.00180 0.85692 1.17390 0.86667 1.03289 0.94650 1.21195 0.92953 0.97190 0.99228 1.21078 0.95515 1.00915 0.96689 1.21338 0.99807 0.97908 0.93262 1.21151 0.92966 0.99958 1.00053 1.21282 0.96437 0.96840 0.94919 1.74838 0.92025 1.20564 1.21613 1.85272 1.19545 1.60078 1.33242 0.79292 0.89094 0.94440 0.93466 0.93987 0.92868 0.90939 0.91871 0.88090 0.87189 0.85224 0.85327 0.85563 0.85178 0.84506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.74 19.25 29.55 0.57 -6.17 16 2 C -0.10 -2.30 11.50 -37.12 -0.43 -2.73 16 3 C 0.27 6.15 5.41 -6.83 -0.04 6.11 16 4 N -0.59 -13.63 2.49 -176.57 -0.44 -14.07 16 5 C -0.27 -7.01 9.63 -15.06 -0.14 -7.15 16 6 H 0.07 1.89 7.92 -52.49 -0.42 1.48 16 7 C 0.01 0.16 4.82 -17.43 -0.08 0.07 16 8 N -0.89 -24.88 9.61 55.49 0.53 -24.34 16 9 Si 0.90 21.26 29.61 -169.99 -5.03 16.23 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.15 2.75 5.68 -4.04 -0.02 2.73 16 14 C -0.14 -2.05 5.52 -26.73 -0.15 -2.20 16 15 C -0.03 -0.34 5.84 -27.89 -0.16 -0.50 16 16 C 0.20 2.79 7.75 -12.99 -0.10 2.69 16 17 N -0.48 -7.20 11.26 -9.89 -0.11 -7.31 16 18 C 0.21 3.05 7.80 -156.12 -1.22 1.83 16 19 C -0.02 -0.23 5.88 -104.89 -0.62 -0.85 16 20 C -0.09 -0.92 9.69 -39.26 -0.38 -1.30 16 21 C -0.12 -1.05 10.03 -39.63 -0.40 -1.44 16 22 C -0.10 -0.81 10.04 -39.52 -0.40 -1.21 16 23 C -0.12 -1.07 10.03 -39.63 -0.40 -1.47 16 24 C -0.07 -0.83 9.70 -39.26 -0.38 -1.22 16 25 N -0.38 -5.74 11.86 30.97 0.37 -5.37 16 26 O 0.08 1.11 11.29 18.04 0.20 1.32 16 27 H 0.19 3.56 7.80 -54.08 -0.42 3.14 16 28 H 0.09 2.30 6.59 -51.93 -0.34 1.96 16 29 H 0.04 0.74 8.12 -51.93 -0.42 0.32 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 32 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.13 1.34 7.87 -52.49 -0.41 0.93 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.14 1.53 7.88 -52.49 -0.41 1.11 16 LS Contribution 363.35 15.07 5.48 5.48 Total: -1.00 -31.23 363.35 -8.71 -39.94 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.36 Total: 0.94 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -4.35 Total: -12.80 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.35 Total: -51.10 kcal Atomic # 8 Polarization: 1.11 SS G_CDS: 0.20 Total: 1.32 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.23 -8.71 -39.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281463672.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.941 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds