Wall clock time and date at job start Fri Apr 10 2020 22:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47379 * 2 1 4 4 C 1.50702 * 109.47274 * 120.00419 * 2 1 3 5 5 N 1.32158 * 120.53689 * 309.48942 * 4 2 1 6 6 C 1.31855 * 120.97623 * 179.97438 * 5 4 2 7 7 N 1.31885 * 122.09536 * 359.97438 * 6 5 4 8 8 C 1.32129 * 120.97253 * 0.02562 * 7 6 5 9 9 C 1.39946 * 120.54518 * 129.46833 * 4 2 1 10 10 C 1.47789 * 120.94099 * 0.04306 * 9 4 2 11 11 O 1.21560 * 119.99648 * 38.13115 * 10 9 4 12 12 N 1.34774 * 120.00012 * 218.13058 * 10 9 4 13 13 C 1.39132 * 119.99983 * 185.24607 * 12 10 9 14 14 C 1.39512 * 119.83432 * 212.75202 * 13 12 10 15 15 C 1.36367 * 120.16090 * 179.76195 * 14 13 12 16 16 C 1.40883 * 119.82897 * 0.54194 * 15 14 13 17 17 C 1.41130 * 120.15651 * 179.69485 * 16 15 14 18 18 H 1.07999 * 120.00024 * 204.68442 * 17 16 15 19 19 C 1.39914 * 120.00654 * 24.68975 * 17 16 15 20 20 N 1.30877 * 119.99299 * 17.76720 * 19 17 16 21 21 Si 1.86799 * 120.00329 * 197.77095 * 19 17 16 22 22 H 1.48501 * 109.47077 * 59.99760 * 21 19 17 23 23 H 1.48505 * 109.46821 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47126 * 299.99343 * 21 19 17 25 25 C 1.40875 * 119.67875 * 359.71302 * 16 15 14 26 26 C 1.36360 * 119.83123 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.46830 * 59.99940 * 1 2 3 28 28 H 1.09005 * 109.47166 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47069 * 300.00231 * 1 2 3 30 30 H 1.09007 * 109.47077 * 239.99750 * 2 1 3 31 31 H 1.08998 * 109.47133 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47189 * 299.99841 * 3 2 1 33 33 H 1.08997 * 109.47208 * 59.99854 * 3 2 1 34 34 H 1.08000 * 118.95265 * 180.02562 * 6 5 4 35 35 H 1.08001 * 120.53470 * 179.72295 * 8 7 6 36 36 H 0.97008 * 119.99848 * 5.25899 * 12 10 9 37 37 H 1.07994 * 119.92090 * 0.02562 * 14 13 12 38 38 H 1.08000 * 120.08333 * 180.23345 * 15 14 13 39 39 H 0.97004 * 119.99464 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.08703 * 179.97438 * 25 16 15 41 41 H 1.08002 * 119.91686 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.5737 -0.3870 2.4269 6 6 2.0069 -1.0033 3.5091 7 7 2.9092 -1.9636 3.4549 8 6 3.4217 -2.3507 2.3002 9 6 2.9918 -1.7238 1.1247 10 6 3.5355 -2.1211 -0.1909 11 8 3.7530 -1.2774 -1.0385 12 7 3.7903 -3.4188 -0.4507 13 6 4.4030 -3.7817 -1.6460 14 6 4.0847 -4.9996 -2.2473 15 6 4.6777 -5.3598 -3.4213 16 6 5.6222 -4.5035 -4.0209 17 6 6.2449 -4.8723 -5.2325 18 1 7.2102 -4.4622 -5.4903 19 6 5.6117 -5.7690 -6.1000 20 7 4.3284 -5.9977 -5.9822 21 14 6.5977 -6.6398 -7.4262 22 1 7.6707 -7.4490 -6.7943 23 1 5.7006 -7.5304 -8.2056 24 1 7.2057 -5.6329 -8.3326 25 6 5.9424 -3.2777 -3.4049 26 6 5.3374 -2.9286 -2.2338 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6094 -0.7130 4.4705 35 1 4.1635 -3.1348 2.2644 36 1 3.5462 -4.0999 0.1956 37 1 3.3638 -5.6570 -1.7841 38 1 4.4275 -6.3012 -3.8877 39 1 3.8895 -6.6197 -6.5833 40 1 6.6659 -2.6165 -3.8586 41 1 5.5821 -1.9894 -1.7602 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298631314.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:12 Heat of formation + Delta-G solvation = 25.312614 kcal Electronic energy + Delta-G solvation = -24679.322121 eV Core-core repulsion = 21137.727225 eV Total energy + Delta-G solvation = -3541.594896 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.48109 -39.49728 -37.36659 -36.16016 -34.53456 -33.39502 -32.93624 -31.71935 -29.65186 -28.95294 -27.16162 -25.85605 -25.07571 -24.38579 -21.90230 -21.03255 -20.86542 -19.98004 -18.00143 -17.70503 -17.30762 -16.88932 -16.23215 -15.34411 -15.15138 -14.77277 -14.49960 -14.22826 -14.14251 -13.96805 -13.64440 -13.14932 -13.04598 -12.75529 -12.20502 -12.19659 -11.96732 -11.69256 -11.60901 -11.47700 -11.35733 -11.16199 -11.13576 -10.96977 -10.74030 -10.65586 -10.11307 -9.70770 -9.67544 -9.51791 -9.41795 -9.20045 -8.97643 -7.62765 -7.07906 -6.82724 -4.37365 0.39233 0.83548 2.47351 2.93309 3.01704 3.03381 3.05518 3.23752 3.44062 3.64161 3.82154 3.86981 3.91126 4.15690 4.54435 4.70934 4.79232 5.03903 5.11815 5.12180 5.28847 5.61032 5.63196 5.64874 5.80503 5.86918 5.97771 6.10513 6.12836 6.22845 6.31338 6.35119 6.65522 6.72177 6.82857 6.95967 7.08748 7.19441 7.50828 7.60446 7.77299 7.82447 7.95048 8.15470 8.19525 8.48699 8.58504 8.80124 8.90348 10.08841 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.025425 B = 0.002941 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.033600 B = 9518.069515 C = 9944.614836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.131 4.131 4 C 0.235 3.765 5 N -0.517 5.517 6 C 0.305 3.695 7 N -0.526 5.526 8 C 0.177 3.823 9 C -0.228 4.228 10 C 0.547 3.453 11 O -0.513 6.513 12 N -0.635 5.635 13 C -0.016 4.016 14 C -0.109 4.109 15 C -0.155 4.155 16 C 0.108 3.892 17 C -0.455 4.455 18 H 0.079 0.921 19 C 0.075 3.925 20 N -0.788 5.788 21 Si 0.910 3.090 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.217 4.217 26 C -0.072 4.072 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.199 0.801 35 H 0.174 0.826 36 H 0.395 0.605 37 H 0.091 0.909 38 H 0.122 0.878 39 H 0.282 0.718 40 H 0.096 0.904 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.561 5.439 12.887 15.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 C -0.189 4.189 4 C 0.088 3.912 5 N -0.230 5.230 6 C 0.017 3.983 7 N -0.240 5.240 8 C 0.011 3.989 9 C -0.235 4.235 10 C 0.332 3.668 11 O -0.390 6.390 12 N -0.277 5.277 13 C -0.108 4.108 14 C -0.129 4.129 15 C -0.174 4.174 16 C 0.105 3.895 17 C -0.484 4.484 18 H 0.097 0.903 19 C -0.144 4.144 20 N -0.413 5.413 21 Si 0.734 3.266 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.189 1.189 25 C -0.237 4.237 26 C -0.092 4.092 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.215 0.785 35 H 0.191 0.809 36 H 0.229 0.771 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.967 6.185 13.074 15.646 hybrid contribution 0.530 -1.102 -0.950 1.549 sum -5.437 5.083 12.124 14.226 Atomic orbital electron populations 1.21780 0.93449 1.01883 1.02568 1.20522 0.96552 0.97279 0.93862 1.21658 1.01513 0.93615 1.02071 1.21873 0.87319 0.88145 0.93817 1.68277 1.27507 1.28574 0.98659 1.25140 0.88545 0.87083 0.97485 1.68422 1.11627 1.15288 1.28650 1.23508 0.94192 0.94737 0.86496 1.21810 1.03100 1.01817 0.96799 1.17737 0.79511 0.83548 0.85954 1.90776 1.51633 1.50161 1.46450 1.42890 1.58413 1.06657 1.19742 1.17102 1.03429 0.99187 0.91082 1.20206 1.00417 0.95581 0.96696 1.20893 1.01382 1.00862 0.94298 1.17669 0.90417 0.89482 0.91901 1.19572 1.04638 1.21989 1.02193 0.90262 1.25955 0.94600 0.95282 0.98552 1.69839 1.09318 1.27812 1.34350 0.86334 0.80391 0.79728 0.80130 1.18745 1.20289 1.18917 1.20641 1.06549 0.97800 0.98701 1.20246 0.94843 0.97836 0.96250 0.91779 0.93073 0.91609 0.86806 0.92297 0.91649 0.92390 0.78495 0.80941 0.77113 0.89133 0.86055 0.90665 0.88616 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.02 37.16 0.34 -1.24 16 2 C -0.06 -0.84 2.73 -91.77 -0.25 -1.09 16 3 C -0.13 -1.59 9.18 37.15 0.34 -1.25 16 4 C 0.24 3.20 5.55 -81.81 -0.45 2.74 16 5 N -0.52 -6.34 9.89 -10.47 -0.10 -6.45 16 6 C 0.30 3.24 12.27 -92.02 -1.13 2.11 16 7 N -0.53 -6.10 10.42 -14.24 -0.15 -6.25 16 8 C 0.18 2.08 10.67 -16.77 -0.18 1.90 16 9 C -0.23 -3.15 5.79 -104.70 -0.61 -3.76 16 10 C 0.55 9.22 6.71 -12.36 -0.08 9.13 16 11 O -0.51 -10.32 12.22 5.31 0.06 -10.26 16 12 N -0.64 -10.61 5.22 -10.61 -0.06 -10.66 16 13 C -0.02 -0.34 6.30 -83.60 -0.53 -0.86 16 14 C -0.11 -2.38 9.89 -39.78 -0.39 -2.78 16 15 C -0.15 -3.83 8.64 -39.26 -0.34 -4.17 16 16 C 0.11 2.80 5.57 -106.80 -0.60 2.21 16 17 C -0.45 -11.72 9.04 -37.86 -0.34 -12.06 16 18 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 19 C 0.07 1.81 5.14 -17.33 -0.09 1.72 16 20 N -0.79 -19.73 10.96 55.55 0.61 -19.12 16 21 Si 0.91 18.06 29.60 -169.99 -5.03 13.03 16 22 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 23 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 24 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 25 C -0.22 -5.31 9.74 -39.26 -0.38 -5.70 16 26 C -0.07 -1.65 8.57 -39.78 -0.34 -1.99 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.71 7.92 -51.93 -0.41 0.29 16 30 H 0.11 1.81 5.35 -51.92 -0.28 1.54 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.20 1.35 8.06 -52.49 -0.42 0.92 16 35 H 0.17 1.61 7.97 -52.49 -0.42 1.19 16 36 H 0.40 5.19 8.39 -40.82 -0.34 4.85 16 37 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.12 3.08 6.16 -52.49 -0.32 2.76 16 39 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 40 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 41 H 0.10 2.31 6.36 -52.49 -0.33 1.97 16 LS Contribution 347.66 15.07 5.24 5.24 Total: -1.00 -29.04 347.66 -9.50 -38.54 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -5.04 Total: 11.00 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -5.03 Total: -15.07 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.30 Total: -42.48 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.06 Total: -10.26 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.04 -9.50 -38.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298631314.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.855 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds