Wall clock time and date at job start Fri Apr 10 2020 22:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36882 * 120.00096 * 2 1 4 4 H 1.07997 * 119.99757 * 181.25926 * 3 2 1 5 5 C 1.39036 * 119.99755 * 1.53429 * 3 2 1 6 6 N 1.31370 * 119.99945 * 347.81324 * 5 3 2 7 7 Si 1.86800 * 119.99767 * 167.81803 * 5 3 2 8 8 H 1.48494 * 109.47392 * 59.99369 * 7 5 3 9 9 H 1.48501 * 109.46993 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46939 * 299.99597 * 7 5 3 11 11 C 1.34776 * 119.99653 * 180.02562 * 2 1 3 12 12 O 1.21622 * 119.99859 * 174.83478 * 11 2 1 13 13 C 1.47489 * 120.00488 * 354.82917 * 11 2 1 14 14 C 1.39705 * 120.19123 * 302.88754 * 13 11 2 15 15 C 1.37830 * 119.90508 * 179.74337 * 14 13 11 16 16 C 1.38534 * 120.31598 * 0.55326 * 15 14 13 17 17 C 1.38103 * 120.40313 * 359.69972 * 16 15 14 18 18 C 1.38728 * 120.07764 * 0.02562 * 17 16 15 19 19 N 1.39696 * 120.15752 * 179.97438 * 18 17 16 20 20 C 1.35857 * 126.10154 * 353.86160 * 19 18 17 21 21 C 1.35293 * 107.61252 * 179.97438 * 20 19 18 22 22 C 1.39957 * 107.97078 * 359.97438 * 21 20 19 23 23 C 1.50695 * 125.81820 * 179.97438 * 22 21 20 24 24 C 1.53004 * 117.49768 * 343.75505 * 23 22 21 25 25 C 1.52998 * 117.50358 * 275.09129 * 23 22 21 26 26 N 1.30837 * 108.36516 * 359.74199 * 22 21 20 27 27 H 1.09004 * 109.46836 * 54.75697 * 1 2 3 28 28 H 1.09002 * 109.47117 * 174.75007 * 1 2 3 29 29 H 1.08999 * 109.46800 * 294.75565 * 1 2 3 30 30 H 0.97001 * 119.99912 * 180.02562 * 6 5 3 31 31 H 1.07997 * 120.04835 * 0.02562 * 14 13 11 32 32 H 1.07998 * 119.84023 * 180.27418 * 15 14 13 33 33 H 1.08007 * 119.80040 * 179.71625 * 16 15 14 34 34 H 1.07995 * 119.95766 * 179.97438 * 17 16 15 35 35 H 1.07996 * 126.19821 * 359.96053 * 20 19 18 36 36 H 1.08001 * 126.01428 * 179.97438 * 21 20 19 37 37 H 1.09006 * 115.54693 * 129.41661 * 23 22 21 38 38 H 1.08997 * 117.49956 * 359.97438 * 24 23 22 39 39 H 1.09004 * 117.49804 * 145.01469 * 24 23 22 40 40 H 1.08995 * 117.50159 * 214.97963 * 25 23 22 41 41 H 1.08994 * 117.49500 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1854 0.0000 4 1 3.2292 1.1855 -0.0206 5 6 1.4546 2.3893 0.0322 6 7 0.1579 2.4051 -0.1777 7 14 2.3650 3.9842 0.3740 8 1 3.4013 4.1958 -0.6683 9 1 1.4045 5.1166 0.3535 10 1 3.0130 3.9082 1.7079 11 6 2.1388 -1.1672 -0.0005 12 8 3.3513 -1.1694 -0.0953 13 6 1.4059 -2.4420 0.1140 14 6 0.5692 -2.6755 1.2082 15 6 -0.1170 -3.8668 1.3066 16 6 0.0275 -4.8396 0.3310 17 6 0.8551 -4.6245 -0.7534 18 6 1.5493 -3.4293 -0.8719 19 7 2.3874 -3.2102 -1.9679 20 6 2.7064 -4.1190 -2.9260 21 6 3.5388 -3.5132 -3.8039 22 6 3.7360 -2.1961 -3.3736 23 6 4.5951 -1.1642 -4.0576 24 6 5.6062 -1.6607 -5.0930 25 6 6.0896 -1.1594 -3.7298 26 7 3.0433 -2.0120 -2.2790 27 1 -0.3633 0.5930 -0.8394 28 1 -0.3633 -1.0234 -0.0940 29 1 -0.3633 0.4303 0.9332 30 1 -0.3268 3.2450 -0.1556 31 1 0.4568 -1.9219 1.9735 32 1 -0.7669 -4.0444 2.1507 33 1 -0.5107 -5.7719 0.4188 34 1 0.9627 -5.3881 -1.5095 35 1 2.3588 -5.1402 -2.9774 36 1 3.9744 -3.9663 -4.6821 37 1 4.1172 -0.2020 -4.2420 38 1 5.6502 -2.7338 -5.2792 39 1 5.7938 -1.0250 -5.9584 40 1 6.5950 -0.1942 -3.6989 41 1 6.4513 -1.9024 -3.0191 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347539578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:14 Heat of formation + Delta-G solvation = 137.389791 kcal Electronic energy + Delta-G solvation = -25891.619650 eV Core-core repulsion = 22354.884785 eV Total energy + Delta-G solvation = -3536.734865 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.19268 -39.23821 -37.47923 -36.76884 -34.55477 -32.91078 -31.74720 -30.70579 -29.75096 -28.61973 -26.26711 -24.77692 -23.82385 -23.08514 -22.25897 -21.97653 -20.29407 -19.46922 -18.84700 -17.65368 -16.85984 -16.30727 -15.84064 -15.09562 -14.89180 -14.84641 -14.47643 -14.06562 -13.98946 -13.82492 -13.48396 -13.18355 -12.94356 -12.67771 -12.36547 -11.76296 -11.69269 -11.61161 -11.32559 -11.29359 -11.06327 -10.92981 -10.78932 -10.63325 -10.37726 -10.33182 -10.12766 -9.70803 -9.51119 -8.96911 -8.74440 -8.62119 -8.22404 -7.70501 -7.63699 -6.15741 -3.67902 1.09018 1.40780 2.56092 2.76132 3.06332 3.22514 3.26985 3.31950 3.81416 4.07425 4.11988 4.26214 4.63526 4.82442 4.87469 5.01777 5.10634 5.13040 5.21946 5.28799 5.30204 5.46554 5.56304 5.69094 5.70706 5.78596 5.88541 5.96110 6.05484 6.11714 6.20808 6.29584 6.38193 6.44583 6.50591 6.58717 6.65728 6.90394 7.01126 7.09726 7.49482 7.54410 7.66734 8.15385 8.17772 8.60880 9.29903 9.54674 10.13678 10.76011 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.009494 B = 0.006827 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.384796 B = 4100.208464 C = 6587.723751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.437 5.437 3 C -0.285 4.285 4 H 0.104 0.896 5 C 0.024 3.976 6 N -0.886 5.886 7 Si 0.929 3.071 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.274 1.274 11 C 0.488 3.512 12 O -0.561 6.561 13 C -0.090 4.090 14 C -0.073 4.073 15 C -0.137 4.137 16 C -0.096 4.096 17 C -0.150 4.150 18 C 0.186 3.814 19 N -0.323 5.323 20 C 0.033 3.967 21 C -0.251 4.251 22 C 0.084 3.916 23 C -0.070 4.070 24 C -0.170 4.170 25 C -0.160 4.160 26 N -0.196 5.196 27 H 0.091 0.909 28 H 0.022 0.978 29 H 0.048 0.952 30 H 0.265 0.735 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.171 0.829 36 H 0.147 0.853 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.183 -12.748 -4.689 13.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.155 5.155 3 C -0.413 4.413 4 H 0.122 0.878 5 C -0.178 4.178 6 N -0.527 5.527 7 Si 0.756 3.244 8 H -0.199 1.199 9 H -0.210 1.210 10 H -0.200 1.200 11 C 0.276 3.724 12 O -0.444 6.444 13 C -0.096 4.096 14 C -0.092 4.092 15 C -0.156 4.156 16 C -0.115 4.115 17 C -0.171 4.171 18 C 0.091 3.909 19 N -0.098 5.098 20 C -0.108 4.108 21 C -0.280 4.280 22 C -0.085 4.085 23 C -0.090 4.090 24 C -0.208 4.208 25 C -0.198 4.198 26 N -0.014 5.014 27 H 0.109 0.891 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.188 0.812 36 H 0.164 0.836 37 H 0.137 0.863 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.252 -11.739 -3.780 12.335 hybrid contribution 0.272 0.122 -0.439 0.531 sum 0.524 -11.617 -4.219 12.371 Atomic orbital electron populations 1.21922 0.80637 0.96872 1.04181 1.43508 1.05754 1.04474 1.61767 1.19732 0.93116 0.81859 1.46612 0.87784 1.25288 0.95783 0.99488 0.97217 1.70107 1.07168 1.26933 1.48529 0.85948 0.78793 0.80422 0.79253 1.19890 1.20993 1.19995 1.17277 0.87293 0.82343 0.85520 1.90624 1.13147 1.86010 1.54618 1.20143 0.98546 0.96569 0.94318 1.21288 0.93991 0.97267 0.96663 1.21064 1.00944 0.93843 0.99701 1.20893 0.97901 0.99242 0.93512 1.20628 1.00018 0.95733 1.00721 1.17471 0.92350 0.94841 0.86213 1.45963 1.35816 1.09414 1.18646 1.22588 1.00687 0.96690 0.90811 1.21308 1.07576 0.95000 1.04099 1.21665 0.98778 0.94239 0.93793 1.20047 0.89813 0.97699 1.01435 1.22999 1.03150 1.01589 0.93041 1.22925 0.95621 1.03099 0.98189 1.78380 1.09213 1.00555 1.13212 0.89071 0.95949 0.93341 0.92448 0.84902 0.85505 0.85386 0.85499 0.81151 0.83551 0.86294 0.88627 0.88435 0.88350 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.61 8.23 59.85 0.49 3.10 16 2 N -0.44 -11.82 3.02 -123.40 -0.37 -12.19 16 3 C -0.29 -8.22 9.55 -15.00 -0.14 -8.36 16 4 H 0.10 3.15 7.19 -52.49 -0.38 2.78 16 5 C 0.02 0.64 5.40 -17.45 -0.09 0.54 16 6 N -0.89 -23.88 9.59 55.50 0.53 -23.35 16 7 Si 0.93 21.34 29.57 -169.99 -5.03 16.32 16 8 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 C 0.49 12.81 5.61 -12.49 -0.07 12.74 16 12 O -0.56 -16.48 14.34 5.26 0.08 -16.40 16 13 C -0.09 -1.93 4.48 -104.82 -0.47 -2.40 16 14 C -0.07 -1.28 7.86 -39.18 -0.31 -1.59 16 15 C -0.14 -1.86 10.02 -39.62 -0.40 -2.26 16 16 C -0.10 -1.20 10.03 -39.52 -0.40 -1.60 16 17 C -0.15 -2.16 9.45 -39.45 -0.37 -2.53 16 18 C 0.19 3.59 6.69 -83.33 -0.56 3.03 16 19 N -0.32 -6.52 3.78 -10.36 -0.04 -6.56 16 20 C 0.03 0.51 10.81 -16.82 -0.18 0.33 16 21 C -0.25 -3.97 10.11 -39.99 -0.40 -4.37 16 22 C 0.08 1.63 6.85 -82.37 -0.56 1.07 16 23 C -0.07 -1.17 6.33 -91.77 -0.58 -1.75 16 24 C -0.17 -2.09 10.02 -26.69 -0.27 -2.35 16 25 C -0.16 -2.35 10.24 -26.69 -0.27 -2.63 16 26 N -0.20 -4.59 8.34 33.69 0.28 -4.30 16 27 H 0.09 2.40 6.39 -51.93 -0.33 2.07 16 28 H 0.02 0.48 5.30 -51.93 -0.28 0.20 16 29 H 0.05 1.17 7.66 -51.93 -0.40 0.78 16 30 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.13 2.30 7.92 -52.49 -0.42 1.88 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 34 H 0.13 1.41 6.78 -52.49 -0.36 1.06 16 35 H 0.17 1.87 7.10 -52.49 -0.37 1.50 16 36 H 0.15 1.78 7.38 -52.49 -0.39 1.40 16 37 H 0.12 2.06 8.14 -51.93 -0.42 1.64 16 38 H 0.10 1.06 7.14 -51.93 -0.37 0.68 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 341.51 15.07 5.15 5.15 Total: -1.00 -34.59 341.51 -8.95 -43.54 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.96 Total: 6.83 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -4.59 Total: -9.02 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.40 Total: -46.41 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: 0.08 Total: -16.40 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.59 -8.95 -43.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347539578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.926 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds