Wall clock time and date at job start Fri Apr 10 2020 22:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47218 * 2 1 4 4 N 1.29026 * 124.91602 * 89.99260 * 3 2 1 5 5 C 1.31784 * 117.12324 * 180.02562 * 4 3 2 6 6 C 1.50701 * 122.74755 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47064 * 305.02494 * 6 5 4 8 8 O 1.21278 * 119.99985 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99944 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.08991 * 109.47625 * 64.99762 * 11 10 9 13 13 C 1.53006 * 109.46846 * 185.00008 * 11 10 9 14 14 C 1.52996 * 109.46918 * 185.00050 * 13 11 10 15 15 N 1.46504 * 109.47054 * 304.99499 * 11 10 9 16 16 C 1.36929 * 119.99940 * 155.00291 * 15 11 10 17 17 H 1.08007 * 120.00260 * 359.97438 * 16 15 11 18 18 C 1.38808 * 120.00410 * 180.02562 * 16 15 11 19 19 N 1.31625 * 119.99828 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00548 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47495 * 89.99884 * 20 18 16 22 22 H 1.48496 * 109.47323 * 209.99857 * 20 18 16 23 23 H 1.48503 * 109.46873 * 329.99888 * 20 18 16 24 24 C 1.33637 * 114.50070 * 0.23722 * 5 4 3 25 25 S 1.70984 * 124.91713 * 270.00179 * 3 2 1 26 26 H 1.09000 * 109.47459 * 300.00583 * 1 2 3 27 27 H 1.09002 * 109.46753 * 60.00342 * 1 2 3 28 28 H 1.09002 * 109.46925 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47084 * 240.00098 * 2 1 3 30 30 H 1.08998 * 109.47023 * 120.00091 * 2 1 3 31 31 H 1.09002 * 109.47060 * 185.02530 * 6 5 4 32 32 H 1.09001 * 109.47380 * 65.02442 * 6 5 4 33 33 H 0.97000 * 119.99708 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.47391 * 59.99686 * 10 9 7 35 35 H 1.09001 * 109.46813 * 299.99742 * 10 9 7 36 36 H 1.09000 * 109.46628 * 304.99786 * 13 11 10 37 37 H 1.08994 * 109.47033 * 64.99811 * 13 11 10 38 38 H 1.08998 * 109.47041 * 180.02562 * 14 13 11 39 39 H 1.09009 * 109.47313 * 299.99451 * 14 13 11 40 40 H 1.08993 * 109.47728 * 59.99548 * 14 13 11 41 41 H 0.96996 * 120.00090 * 335.00419 * 15 11 10 42 42 H 0.96994 * 120.00251 * 180.02562 * 19 18 16 43 43 H 1.07998 * 126.03396 * 179.76443 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2784 2.1171 1.0580 5 6 2.7132 3.3483 0.8793 6 6 3.0390 4.2720 2.0246 7 6 1.8439 4.3830 2.9360 8 8 0.8280 3.7718 2.6809 9 7 1.9043 5.1616 4.0345 10 6 0.7427 5.2690 4.9208 11 6 1.0731 6.2080 6.0828 12 1 1.2382 7.2152 5.7004 13 6 -0.0929 6.2233 7.0734 14 6 0.1826 7.2545 8.1695 15 7 2.2838 5.7385 6.7610 16 6 3.0621 6.6210 7.4614 17 1 2.7836 7.6632 7.5136 18 6 4.2096 6.1763 8.1035 19 7 4.5493 4.9063 8.0396 20 14 5.2709 7.3800 9.0597 21 1 4.8052 7.4399 10.4684 22 1 6.6852 6.9289 9.0247 23 1 5.1660 8.7282 8.4459 24 6 2.8362 3.7123 -0.4006 25 16 2.3586 2.3435 -1.4020 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.2919 5.2583 1.6352 32 1 3.8861 3.8737 2.5830 33 1 2.7170 5.6501 4.2387 34 1 0.4905 4.2828 5.3105 35 1 -0.1047 5.6667 4.3624 36 1 -1.0115 6.4869 6.5491 37 1 -0.2013 5.2360 7.5222 38 1 -0.6478 7.2651 8.8754 39 1 1.1013 6.9909 8.6937 40 1 0.2911 8.2418 7.7207 41 1 2.5342 4.8026 6.7138 42 1 5.3509 4.5955 8.4886 43 1 3.1713 4.6747 -0.7580 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753498607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:51 Heat of formation + Delta-G solvation = 1.070767 kcal Electronic energy + Delta-G solvation = -23213.579693 eV Core-core repulsion = 19806.377543 eV Total energy + Delta-G solvation = -3407.202150 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.22895 -38.83937 -36.63301 -34.38486 -33.59349 -32.37713 -31.25990 -29.74804 -28.64062 -27.25989 -25.43756 -23.73882 -22.67666 -21.85629 -20.20847 -19.89519 -19.59376 -17.84716 -17.22972 -16.53604 -15.82832 -15.29798 -15.24433 -14.89892 -14.64001 -14.28441 -14.05669 -13.71004 -13.46265 -13.18282 -13.01997 -12.97283 -12.73530 -12.40904 -12.19684 -11.92878 -11.77630 -11.43433 -11.37995 -11.26303 -10.95183 -10.90136 -10.72074 -10.41701 -10.19813 -10.00698 -9.60109 -9.54227 -9.48755 -9.36317 -8.95949 -8.73456 -8.53025 -7.03311 -5.81495 -3.10760 0.68083 1.32056 1.66994 2.77667 3.05795 3.39045 3.44939 3.46579 3.73250 3.96482 4.53894 4.68052 4.91797 5.01449 5.05876 5.16315 5.26212 5.39351 5.44705 5.46888 5.49317 5.58177 5.62949 5.69793 5.82799 5.94206 5.97378 6.00058 6.02763 6.13665 6.21268 6.44367 6.56803 6.59371 6.62703 6.96317 7.05109 7.24394 7.65926 7.81451 8.02326 8.35787 8.68214 9.47648 10.03212 10.39276 11.40287 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.018052 B = 0.002883 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.690875 B = 9711.358584 C =10388.429473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C 0.057 3.943 4 N -0.441 5.441 5 C 0.098 3.902 6 C -0.071 4.071 7 C 0.515 3.485 8 O -0.538 6.538 9 N -0.714 5.714 10 C 0.117 3.883 11 C 0.164 3.836 12 H 0.053 0.947 13 C -0.134 4.134 14 C -0.146 4.146 15 N -0.721 5.721 16 C -0.237 4.237 17 H 0.073 0.927 18 C -0.011 4.011 19 N -0.929 5.929 20 Si 0.902 3.098 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.261 4.261 25 S 0.095 5.905 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.410 0.590 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.042 0.958 37 H 0.056 0.944 38 H 0.032 0.968 39 H 0.084 0.916 40 H 0.040 0.960 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.002 -4.370 -18.407 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.087 4.087 3 C -0.223 4.223 4 N -0.154 5.154 5 C -0.034 4.034 6 C -0.113 4.113 7 C 0.300 3.700 8 O -0.415 6.415 9 N -0.367 5.367 10 C -0.007 4.007 11 C 0.053 3.947 12 H 0.071 0.929 13 C -0.175 4.175 14 C -0.204 4.204 15 N -0.364 5.364 16 C -0.368 4.368 17 H 0.091 0.909 18 C -0.208 4.208 19 N -0.577 5.577 20 Si 0.734 3.266 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.208 1.208 24 C -0.399 4.399 25 S 0.349 5.651 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.246 0.754 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.103 0.897 40 H 0.059 0.941 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -5.777 -5.084 -19.080 20.574 hybrid contribution 1.323 1.261 1.486 2.356 sum -4.454 -3.823 -17.594 18.547 Atomic orbital electron populations 1.21764 0.93450 1.02335 1.02987 1.20208 0.96852 0.87597 1.04023 1.27070 1.03061 1.01696 0.90423 1.65993 1.12703 1.05642 1.31040 1.19618 0.99516 0.91215 0.93084 1.20265 0.98729 0.98849 0.93491 1.20160 0.89014 0.79188 0.81662 1.90686 1.32371 1.44859 1.73537 1.45932 1.18003 1.48312 1.24419 1.21618 0.87574 1.00591 0.90937 1.20559 0.88339 0.95788 0.89985 0.92918 1.22070 0.97711 0.99665 0.98041 1.21769 1.02352 0.97893 0.98348 1.42461 1.23883 1.09447 1.60576 1.19200 1.02255 0.91154 1.24178 0.90945 1.24734 0.98702 0.96003 1.01342 1.69665 1.26797 1.13231 1.47999 0.86267 0.80009 0.80201 0.80158 1.21793 1.21874 1.20799 1.26713 1.13355 1.04247 0.95612 1.83772 1.61535 1.06157 1.13595 0.91468 0.92588 0.91551 0.89904 0.88733 0.87429 0.86851 0.75429 0.91984 0.92140 0.93902 0.92541 0.94898 0.89683 0.94133 0.78052 0.93503 0.80633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.89 37.16 0.37 -0.99 16 2 C -0.05 -0.44 6.52 -27.88 -0.18 -0.62 16 3 C 0.06 0.72 6.64 -13.46 -0.09 0.63 16 4 N -0.44 -6.95 9.68 -8.05 -0.08 -7.03 16 5 C 0.10 1.40 5.64 -84.22 -0.47 0.92 16 6 C -0.07 -0.95 6.19 -29.03 -0.18 -1.13 16 7 C 0.52 8.75 7.80 -10.98 -0.09 8.66 16 8 O -0.54 -10.97 15.44 5.56 0.09 -10.89 16 9 N -0.71 -11.94 5.39 -60.29 -0.32 -12.26 16 10 C 0.12 2.04 5.23 -4.04 -0.02 2.02 16 11 C 0.16 3.04 2.59 -67.92 -0.18 2.86 16 12 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 13 C -0.13 -2.34 5.61 -26.73 -0.15 -2.49 16 14 C -0.15 -2.62 9.18 37.16 0.34 -2.28 16 15 N -0.72 -16.43 4.51 -53.42 -0.24 -16.67 16 16 C -0.24 -5.97 7.75 -15.06 -0.12 -6.09 16 17 H 0.07 1.79 7.33 -52.48 -0.38 1.40 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -26.70 13.06 55.49 0.72 -25.97 16 20 Si 0.90 21.40 29.55 -169.99 -5.02 16.37 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C -0.26 -3.01 11.07 29.12 0.32 -2.68 16 25 S 0.09 0.98 23.18 -107.50 -2.49 -1.51 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.11 1.08 8.03 -51.93 -0.42 0.67 16 32 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.41 6.76 8.14 -40.82 -0.33 6.42 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 1.80 5.99 -51.92 -0.31 1.48 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.39 9.68 7.80 -40.82 -0.32 9.36 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 43 H 0.18 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -31.62 371.17 -9.11 -40.73 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -6.81 Total: 13.22 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -0.54 Total: -1.59 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.08 Total: -61.93 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.49 Total: -1.51 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.62 -9.11 -40.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753498607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.801 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds