Wall clock time and date at job start Fri Apr 10 2020 22:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35852 * 116.99921 * 2 1 4 4 C 1.38583 * 120.11758 * 359.97438 * 3 2 1 5 5 C 1.38182 * 120.06494 * 180.02562 * 4 3 2 6 6 C 1.38384 * 120.29873 * 0.02562 * 5 4 3 7 7 C 1.38006 * 120.24289 * 359.67936 * 6 5 4 8 8 C 1.39308 * 119.92958 * 0.59953 * 7 6 5 9 9 C 1.48318 * 120.15117 * 179.69888 * 8 7 6 10 10 C 1.39369 * 120.12361 * 309.72507 * 9 8 7 11 11 C 1.38015 * 119.87632 * 179.97438 * 10 9 8 12 12 C 1.38324 * 120.12093 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.86929 * 180.02562 * 12 11 10 14 14 N 1.46893 * 109.47503 * 89.99744 * 13 12 11 15 15 C 1.46902 * 111.00049 * 66.04370 * 14 13 12 16 16 C 1.46899 * 111.00168 * 189.99609 * 14 13 12 17 17 C 1.50700 * 109.47534 * 170.00038 * 16 14 13 18 18 H 1.08006 * 119.99723 * 0.02562 * 17 16 14 19 19 C 1.37871 * 120.00661 * 180.02562 * 17 16 14 20 20 N 1.31524 * 119.99752 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00356 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47007 * 60.00046 * 21 19 17 23 23 H 1.48498 * 109.46960 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46988 * 299.99920 * 21 19 17 25 25 C 1.38319 * 120.25003 * 0.02562 * 12 11 10 26 26 C 1.38004 * 120.12722 * 359.97438 * 25 12 11 27 27 H 1.08993 * 109.47213 * 299.99867 * 1 2 3 28 28 H 1.09005 * 109.47113 * 60.00477 * 1 2 3 29 29 H 1.09002 * 109.46780 * 179.97438 * 1 2 3 30 30 H 1.08007 * 119.96491 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.84586 * 180.02562 * 5 4 3 32 32 H 1.08006 * 119.87977 * 179.97438 * 6 5 4 33 33 H 1.08001 * 120.03731 * 180.31248 * 7 6 5 34 34 H 1.08005 * 120.06061 * 0.25412 * 10 9 8 35 35 H 1.08000 * 119.93437 * 180.02562 * 11 10 9 36 36 H 1.09008 * 109.46973 * 209.99674 * 13 12 11 37 37 H 1.09000 * 109.47711 * 329.99155 * 13 12 11 38 38 H 1.08995 * 109.47288 * 59.99985 * 15 14 13 39 39 H 1.09002 * 109.47083 * 179.97438 * 15 14 13 40 40 H 1.08997 * 109.47094 * 299.99624 * 15 14 13 41 41 H 1.09003 * 109.47356 * 289.99631 * 16 14 13 42 42 H 1.09001 * 109.47424 * 49.99870 * 16 14 13 43 43 H 0.96998 * 119.99636 * 180.02562 * 20 19 17 44 44 H 1.08004 * 119.93512 * 179.97438 * 25 12 11 45 45 H 1.08005 * 120.06153 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 1.2933 2.3743 -0.0005 5 6 1.9218 3.6049 -0.0011 6 6 3.3034 3.6833 -0.0016 7 6 4.0649 2.5323 0.0051 8 6 3.4416 1.2865 -0.0003 9 6 4.2553 0.0464 0.0001 10 6 5.2868 -0.1136 -0.9233 11 6 6.0410 -1.2694 -0.9181 12 6 5.7744 -2.2681 0.0011 13 6 6.6020 -3.5276 0.0022 14 7 7.7570 -3.3539 0.8929 15 6 7.3277 -3.2166 2.2911 16 6 8.7101 -4.4614 0.7412 17 6 9.9837 -4.1326 1.4766 18 1 10.0757 -3.1947 2.0044 19 6 11.0314 -5.0288 1.4759 20 7 10.9191 -6.1710 0.8336 21 14 12.6103 -4.6208 2.3869 22 1 12.3123 -4.4185 3.8276 23 1 13.5736 -5.7404 2.2337 24 1 13.1998 -3.3794 1.8243 25 6 4.7512 -2.1151 0.9192 26 6 3.9906 -0.9636 0.9231 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2147 2.3193 -0.0014 31 1 1.3320 4.5096 -0.0011 32 1 3.7875 4.6487 -0.0024 33 1 5.1429 2.5974 0.0097 34 1 5.4984 0.6673 -1.6388 35 1 6.8409 -1.3942 -1.6330 36 1 5.9942 -4.3614 0.3538 37 1 6.9511 -3.7339 -1.0096 38 1 6.7844 -4.1116 2.5939 39 1 8.2025 -3.0898 2.9289 40 1 6.6779 -2.3469 2.3879 41 1 8.2771 -5.3725 1.1541 42 1 8.9292 -4.6100 -0.3162 43 1 11.6561 -6.8017 0.8334 44 1 4.5472 -2.8983 1.6343 45 1 3.1916 -0.8455 1.6402 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157797366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:54 Heat of formation + Delta-G solvation = 16.310488 kcal Electronic energy + Delta-G solvation = -24465.681292 eV Core-core repulsion = 21027.236378 eV Total energy + Delta-G solvation = -3438.444914 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.52278 -38.98177 -37.54566 -36.26325 -33.11991 -32.22284 -30.80342 -30.30862 -29.69655 -27.58732 -27.03145 -26.36733 -24.03553 -22.78851 -22.37749 -21.75850 -20.77651 -19.99074 -18.34793 -16.74350 -16.38039 -16.26540 -15.99682 -15.24512 -15.04346 -14.90039 -14.76196 -14.42428 -14.17576 -13.91142 -13.63036 -13.34463 -13.14341 -12.90789 -12.69843 -12.24375 -12.19998 -11.90038 -11.71859 -11.51084 -11.37075 -11.28507 -11.08736 -10.88885 -10.82848 -10.62258 -10.54498 -10.36360 -9.81201 -9.32522 -9.18726 -8.63893 -8.60553 -8.40709 -7.92488 -7.18929 -6.00013 -4.01157 0.86786 1.20354 1.71179 1.77829 3.04548 3.35773 3.39347 3.42768 3.52525 4.04031 4.45551 4.46560 4.60113 4.76473 4.83773 4.85332 5.05912 5.11208 5.17607 5.19533 5.21196 5.26867 5.33514 5.38984 5.43784 5.64070 5.72082 5.79936 5.97521 6.00135 6.11993 6.14686 6.24897 6.29998 6.33517 6.38390 6.43129 6.51809 6.70552 6.78935 6.81137 7.01475 7.16615 7.27469 7.32030 7.37187 7.82749 8.11200 8.23657 8.57802 9.06311 9.62761 11.10840 Molecular weight = 311.16amu Principal moments of inertia in cm(-1) A = 0.025883 B = 0.002490 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.533268 B =11243.822792 C =11818.082423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.136 3.864 4 C -0.210 4.210 5 C -0.085 4.085 6 C -0.156 4.156 7 C -0.071 4.071 8 C -0.068 4.068 9 C -0.055 4.055 10 C -0.108 4.108 11 C -0.101 4.101 12 C -0.055 4.055 13 C 0.087 3.913 14 N -0.534 5.534 15 C 0.035 3.965 16 C 0.192 3.808 17 C -0.506 4.506 18 H 0.063 0.937 19 C 0.054 3.946 20 N -0.900 5.900 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.276 1.276 25 C -0.116 4.116 26 C -0.092 4.092 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.031 0.969 37 H 0.076 0.924 38 H 0.009 0.991 39 H 0.073 0.927 40 H 0.049 0.951 41 H -0.009 1.009 42 H 0.030 0.970 43 H 0.261 0.739 44 H 0.118 0.882 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.103 16.900 -2.639 27.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.218 6.218 3 C 0.090 3.910 4 C -0.229 4.229 5 C -0.103 4.103 6 C -0.175 4.175 7 C -0.089 4.089 8 C -0.068 4.068 9 C -0.055 4.055 10 C -0.126 4.126 11 C -0.119 4.119 12 C -0.056 4.056 13 C -0.041 4.041 14 N -0.258 5.258 15 C -0.113 4.113 16 C 0.068 3.932 17 C -0.545 4.545 18 H 0.081 0.919 19 C -0.147 4.147 20 N -0.539 5.539 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.201 1.201 25 C -0.134 4.134 26 C -0.110 4.110 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.150 0.850 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.049 0.951 37 H 0.095 0.905 38 H 0.028 0.972 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.009 0.991 42 H 0.048 0.952 43 H 0.071 0.929 44 H 0.136 0.864 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -21.666 16.937 -2.817 27.644 hybrid contribution 0.171 -0.472 0.718 0.876 sum -21.495 16.465 -2.099 27.157 Atomic orbital electron populations 1.23069 0.78730 1.04024 1.01108 1.86179 1.20911 1.26461 1.88250 1.19040 0.91468 0.84371 0.96092 1.21158 0.99902 0.92301 1.09544 1.20948 0.94717 0.96836 0.97791 1.21005 0.93819 0.98408 1.04233 1.21154 1.00214 0.90545 0.96959 1.18220 0.89392 0.93544 1.05671 1.18435 0.96431 0.93215 0.97443 1.21102 0.95294 0.97792 0.98386 1.20950 0.98842 0.93024 0.99129 1.20024 0.94619 0.96421 0.94491 1.21079 0.91807 0.92185 0.98992 1.62141 1.11616 1.47222 1.04816 1.22278 1.00122 0.98159 0.90790 1.19753 0.89848 0.86193 0.97455 1.21127 0.98193 1.03369 1.31772 0.91900 1.24991 0.98823 0.95002 0.95842 1.69955 1.32495 1.08636 1.42860 0.86552 0.82840 0.77813 0.80155 1.20304 1.21381 1.20148 1.20971 0.95989 0.97684 0.98800 1.20993 0.98857 0.93010 0.98147 0.92755 0.92790 0.88187 0.85519 0.85946 0.85767 0.85002 0.86408 0.85766 0.95083 0.90524 0.97234 0.90839 0.93231 0.99130 0.95196 0.92899 0.86426 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.41 8.84 -19.28 -0.17 -3.58 16 3 C 0.14 1.54 6.60 -38.87 -0.26 1.29 16 4 C -0.21 -1.92 9.03 -39.47 -0.36 -2.28 16 5 C -0.08 -0.71 10.03 -39.55 -0.40 -1.11 16 6 C -0.16 -1.40 10.03 -39.61 -0.40 -1.79 16 7 C -0.07 -0.75 9.51 -39.27 -0.37 -1.12 16 8 C -0.07 -0.83 5.48 -104.77 -0.57 -1.41 16 9 C -0.05 -0.76 5.27 -104.91 -0.55 -1.32 16 10 C -0.11 -1.50 9.52 -39.24 -0.37 -1.87 16 11 C -0.10 -1.56 9.68 -39.63 -0.38 -1.94 16 12 C -0.05 -0.91 4.89 -104.56 -0.51 -1.42 16 13 C 0.09 1.64 5.11 -4.98 -0.03 1.61 16 14 N -0.53 -11.89 4.74 -245.83 -1.17 -13.06 16 15 C 0.04 0.72 8.95 60.07 0.54 1.25 16 16 C 0.19 5.10 4.72 -4.98 -0.02 5.08 16 17 C -0.51 -14.44 8.46 -34.44 -0.29 -14.73 16 18 H 0.06 1.78 7.12 -52.48 -0.37 1.41 16 19 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 21 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C -0.12 -1.76 7.94 -39.64 -0.31 -2.08 16 26 C -0.09 -1.31 8.78 -39.25 -0.34 -1.65 16 27 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 28 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.13 0.86 6.30 -52.48 -0.33 0.53 16 31 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 32 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 33 H 0.13 1.27 8.05 -52.49 -0.42 0.85 16 34 H 0.12 1.40 8.04 -52.48 -0.42 0.97 16 35 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.03 0.57 8.06 -51.92 -0.42 0.15 16 37 H 0.08 1.42 7.87 -51.93 -0.41 1.01 16 38 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.07 1.60 6.76 -51.93 -0.35 1.25 16 40 H 0.05 0.91 6.16 -51.93 -0.32 0.59 16 41 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 42 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 44 H 0.12 1.68 8.03 -52.48 -0.42 1.26 16 45 H 0.12 1.52 7.68 -52.48 -0.40 1.12 16 LS Contribution 371.24 15.07 5.59 5.59 Total: -1.00 -31.98 371.24 -10.52 -42.50 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.75 Total: -1.23 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -3.74 Total: -20.85 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: -0.43 Total: -39.32 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -0.17 Total: -3.58 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.98 -10.52 -42.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157797366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.813 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds