Wall clock time and date at job start Fri Apr 10 2020 22:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35852 * 116.99921 * 2 1 4 4 C 1.38583 * 120.11758 * 359.97438 * 3 2 1 5 5 C 1.38182 * 120.06494 * 180.02562 * 4 3 2 6 6 C 1.38384 * 120.29873 * 0.02562 * 5 4 3 7 7 C 1.38006 * 120.24289 * 359.67936 * 6 5 4 8 8 C 1.39308 * 119.92958 * 0.59953 * 7 6 5 9 9 C 1.48318 * 120.15117 * 179.69888 * 8 7 6 10 10 C 1.39369 * 120.12361 * 309.72507 * 9 8 7 11 11 C 1.38015 * 119.87632 * 179.97438 * 10 9 8 12 12 C 1.38324 * 120.12093 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.86929 * 180.02562 * 12 11 10 14 14 N 1.46893 * 109.47503 * 89.99744 * 13 12 11 15 15 C 1.46902 * 111.00049 * 66.04370 * 14 13 12 16 16 C 1.46899 * 111.00168 * 189.99609 * 14 13 12 17 17 C 1.50700 * 109.47534 * 170.00038 * 16 14 13 18 18 H 1.08006 * 119.99723 * 0.02562 * 17 16 14 19 19 C 1.37871 * 120.00661 * 180.02562 * 17 16 14 20 20 N 1.31524 * 119.99752 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00356 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47007 * 60.00046 * 21 19 17 23 23 H 1.48498 * 109.46960 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46988 * 299.99920 * 21 19 17 25 25 C 1.38319 * 120.25003 * 0.02562 * 12 11 10 26 26 C 1.38004 * 120.12722 * 359.97438 * 25 12 11 27 27 H 1.08993 * 109.47213 * 299.99867 * 1 2 3 28 28 H 1.09005 * 109.47113 * 60.00477 * 1 2 3 29 29 H 1.09002 * 109.46780 * 179.97438 * 1 2 3 30 30 H 1.08007 * 119.96491 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.84586 * 180.02562 * 5 4 3 32 32 H 1.08006 * 119.87977 * 179.97438 * 6 5 4 33 33 H 1.08001 * 120.03731 * 180.31248 * 7 6 5 34 34 H 1.08005 * 120.06061 * 0.25412 * 10 9 8 35 35 H 1.08000 * 119.93437 * 180.02562 * 11 10 9 36 36 H 1.09008 * 109.46973 * 209.99674 * 13 12 11 37 37 H 1.09000 * 109.47711 * 329.99155 * 13 12 11 38 38 H 1.08995 * 109.47288 * 59.99985 * 15 14 13 39 39 H 1.09002 * 109.47083 * 179.97438 * 15 14 13 40 40 H 1.08997 * 109.47094 * 299.99624 * 15 14 13 41 41 H 1.09003 * 109.47356 * 289.99631 * 16 14 13 42 42 H 1.09001 * 109.47424 * 49.99870 * 16 14 13 43 43 H 0.96998 * 119.99636 * 180.02562 * 20 19 17 44 44 H 1.08004 * 119.93512 * 179.97438 * 25 12 11 45 45 H 1.08005 * 120.06153 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 1.2933 2.3743 -0.0005 5 6 1.9218 3.6049 -0.0011 6 6 3.3034 3.6833 -0.0016 7 6 4.0649 2.5323 0.0051 8 6 3.4416 1.2865 -0.0003 9 6 4.2553 0.0464 0.0001 10 6 5.2868 -0.1136 -0.9233 11 6 6.0410 -1.2694 -0.9181 12 6 5.7744 -2.2681 0.0011 13 6 6.6020 -3.5276 0.0022 14 7 7.7570 -3.3539 0.8929 15 6 7.3277 -3.2166 2.2911 16 6 8.7101 -4.4614 0.7412 17 6 9.9837 -4.1326 1.4766 18 1 10.0757 -3.1947 2.0044 19 6 11.0314 -5.0288 1.4759 20 7 10.9191 -6.1710 0.8336 21 14 12.6103 -4.6208 2.3869 22 1 12.3123 -4.4185 3.8276 23 1 13.5736 -5.7404 2.2337 24 1 13.1998 -3.3794 1.8243 25 6 4.7512 -2.1151 0.9192 26 6 3.9906 -0.9636 0.9231 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2147 2.3193 -0.0014 31 1 1.3320 4.5096 -0.0011 32 1 3.7875 4.6487 -0.0024 33 1 5.1429 2.5974 0.0097 34 1 5.4984 0.6673 -1.6388 35 1 6.8409 -1.3942 -1.6330 36 1 5.9942 -4.3614 0.3538 37 1 6.9511 -3.7339 -1.0096 38 1 6.7844 -4.1116 2.5939 39 1 8.2025 -3.0898 2.9289 40 1 6.6779 -2.3469 2.3879 41 1 8.2771 -5.3725 1.1541 42 1 8.9292 -4.6100 -0.3162 43 1 11.6561 -6.8017 0.8334 44 1 4.5472 -2.8983 1.6343 45 1 3.1916 -0.8455 1.6402 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157797366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:53 Heat of formation + Delta-G solvation = -1.001600 kcal Electronic energy + Delta-G solvation = -24466.432001 eV Core-core repulsion = 21027.236378 eV Total energy + Delta-G solvation = -3439.195623 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.31683 -40.12878 -38.36953 -37.81615 -34.86459 -33.68240 -31.90280 -31.13443 -30.79086 -29.05811 -28.20105 -27.74163 -25.68445 -23.77530 -23.60389 -22.62213 -22.22314 -21.40528 -19.07374 -18.53925 -17.58522 -17.08126 -16.86093 -16.66977 -16.38640 -16.24746 -15.95995 -15.69701 -15.32058 -15.18473 -14.86070 -14.53709 -14.27230 -14.00654 -13.76897 -13.70729 -13.35954 -13.25033 -12.92402 -12.80895 -12.67777 -12.59882 -12.54790 -12.34150 -12.22141 -11.98689 -11.85313 -11.82957 -11.57954 -11.26709 -10.61622 -10.18282 -9.77654 -9.47589 -9.05210 -8.83529 -8.20133 -6.30580 -0.01601 0.48410 0.56762 0.75323 1.41137 1.44656 1.52620 2.40291 2.41214 2.71439 2.94153 3.11983 3.52017 3.64571 3.91135 3.97133 4.01577 4.10817 4.16344 4.30361 4.37082 4.40901 4.45322 4.49159 4.53177 4.57288 4.68190 4.71705 4.73587 4.76031 4.80712 4.94601 5.05970 5.09229 5.16671 5.19927 5.27091 5.33965 5.43723 5.54076 5.60591 5.64165 5.71202 5.78571 5.88381 6.03508 6.11192 6.31652 6.49605 6.60037 6.84839 7.38861 8.90639 Molecular weight = 311.16amu Principal moments of inertia in cm(-1) A = 0.025883 B = 0.002490 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.533268 B =11243.822792 C =11818.082423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.124 3.876 4 C -0.212 4.212 5 C -0.080 4.080 6 C -0.159 4.159 7 C -0.079 4.079 8 C -0.100 4.100 9 C -0.047 4.047 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.076 4.076 13 C 0.092 3.908 14 N -0.541 5.541 15 C 0.042 3.958 16 C 0.207 3.793 17 C -0.524 4.524 18 H 0.062 0.938 19 C 0.001 3.999 20 N -0.935 5.935 21 Si 0.970 3.030 22 H -0.267 1.267 23 H -0.282 1.282 24 H -0.268 1.268 25 C -0.117 4.117 26 C -0.096 4.096 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.124 0.876 36 H 0.032 0.968 37 H 0.071 0.929 38 H 0.012 0.988 39 H 0.056 0.944 40 H 0.073 0.927 41 H -0.037 1.037 42 H 0.006 0.994 43 H 0.265 0.735 44 H 0.123 0.877 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.394 19.629 -2.051 30.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C 0.078 3.922 4 C -0.231 4.231 5 C -0.097 4.097 6 C -0.177 4.177 7 C -0.097 4.097 8 C -0.101 4.101 9 C -0.047 4.047 10 C -0.128 4.128 11 C -0.127 4.127 12 C -0.076 4.076 13 C -0.035 4.035 14 N -0.265 5.265 15 C -0.106 4.106 16 C 0.081 3.919 17 C -0.563 4.563 18 H 0.080 0.920 19 C -0.197 4.197 20 N -0.575 5.575 21 Si 0.795 3.205 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.193 1.193 25 C -0.136 4.136 26 C -0.114 4.114 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.128 0.872 30 H 0.168 0.832 31 H 0.171 0.829 32 H 0.165 0.835 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.142 0.858 36 H 0.050 0.950 37 H 0.089 0.911 38 H 0.030 0.970 39 H 0.075 0.925 40 H 0.091 0.909 41 H -0.019 1.019 42 H 0.024 0.976 43 H 0.074 0.926 44 H 0.141 0.859 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -22.985 19.681 -2.229 30.342 hybrid contribution 0.394 -1.217 0.492 1.370 sum -22.591 18.464 -1.737 29.229 Atomic orbital electron populations 1.23321 0.76768 1.05230 1.02314 1.86134 1.23084 1.26870 1.88338 1.19217 0.91375 0.85211 0.96379 1.21469 1.01090 0.91819 1.08716 1.21375 0.94821 0.97727 0.95817 1.21320 0.94273 0.98767 1.03370 1.21296 1.00663 0.90661 0.97061 1.18295 0.90035 0.93300 1.08443 1.18711 0.95884 0.93765 0.96349 1.21295 0.95072 0.97609 0.98789 1.21041 0.99230 0.93450 0.99020 1.19812 0.95574 0.95894 0.96320 1.21034 0.90851 0.93831 0.97811 1.62053 1.12958 1.45106 1.06428 1.22221 0.99728 0.99288 0.89383 1.19413 0.90580 0.86503 0.95393 1.21422 0.99224 1.03483 1.32126 0.91988 1.25926 1.02491 0.94694 0.96562 1.70085 1.33731 1.09649 1.44027 0.85421 0.78209 0.77839 0.79061 1.19238 1.20716 1.19319 1.21029 0.95728 0.98284 0.98559 1.21125 0.98925 0.92792 0.98538 0.91400 0.91613 0.87154 0.83230 0.82926 0.83475 0.84750 0.84489 0.85826 0.94983 0.91091 0.96956 0.92471 0.90859 1.01889 0.97629 0.92639 0.85894 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -6.96 8.84 -91.89 -0.81 -7.78 16 3 C 0.12 2.61 6.60 22.73 0.15 2.76 16 4 C -0.21 -3.27 9.03 22.34 0.20 -3.07 16 5 C -0.08 -1.05 10.03 22.29 0.22 -0.83 16 6 C -0.16 -2.38 10.03 22.25 0.22 -2.16 16 7 C -0.08 -1.54 9.51 22.47 0.21 -1.33 16 8 C -0.10 -2.35 5.48 -19.96 -0.11 -2.46 16 9 C -0.05 -1.27 5.27 -20.05 -0.11 -1.37 16 10 C -0.11 -3.00 9.52 22.49 0.21 -2.78 16 11 C -0.11 -3.39 9.68 22.24 0.22 -3.18 16 12 C -0.08 -2.53 4.89 -19.83 -0.10 -2.63 16 13 C 0.09 3.59 5.11 85.56 0.44 4.02 16 14 N -0.54 -24.85 4.74 -931.66 -4.42 -29.27 16 15 C 0.04 1.74 8.95 127.69 1.14 2.88 16 16 C 0.21 11.47 4.72 85.56 0.40 11.87 16 17 C -0.52 -30.58 8.46 25.60 0.22 -30.36 16 18 H 0.06 3.55 7.12 -2.91 -0.02 3.53 16 19 C 0.00 0.07 5.46 84.65 0.46 0.53 16 20 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 21 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 25 C -0.12 -3.56 7.94 22.23 0.18 -3.38 16 26 C -0.10 -2.67 8.78 22.49 0.20 -2.48 16 27 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 28 H 0.07 0.59 7.66 -2.38 -0.02 0.57 16 29 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.15 1.51 6.30 -2.91 -0.02 1.49 16 31 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 32 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.13 2.42 8.05 -2.91 -0.02 2.40 16 34 H 0.14 3.12 8.04 -2.91 -0.02 3.09 16 35 H 0.12 3.76 8.06 -2.91 -0.02 3.73 16 36 H 0.03 1.22 8.06 -2.38 -0.02 1.20 16 37 H 0.07 2.77 7.87 -2.39 -0.02 2.75 16 38 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.06 2.52 6.76 -2.39 -0.02 2.51 16 40 H 0.07 2.66 6.16 -2.39 -0.01 2.65 16 41 H -0.04 -2.18 8.12 -2.39 -0.02 -2.20 16 42 H 0.01 0.33 7.93 -2.39 -0.02 0.31 16 43 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 44 H 0.12 3.50 8.03 -2.91 -0.02 3.47 16 45 H 0.13 3.22 7.68 -2.91 -0.02 3.19 16 Total: -1.00 -69.74 371.24 3.32 -66.42 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.97 Total: 13.10 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 5.28 Total: -32.65 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -4.14 Total: -86.20 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.81 Total: -7.78 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -69.74 3.32 -66.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157797366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.418 kcal (2) G-P(sol) polarization free energy of solvation -69.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds