Wall clock time and date at job start Fri Apr 10 2020 22:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46653 * 2 1 4 4 N 1.46891 * 109.47220 * 120.00309 * 2 1 3 5 5 C 1.46904 * 111.00126 * 274.99831 * 4 2 1 6 6 H 1.08998 * 109.46722 * 35.00548 * 5 4 2 7 7 C 1.52998 * 109.47123 * 155.00208 * 5 4 2 8 8 C 1.50704 * 109.47215 * 295.00238 * 7 5 4 9 9 H 1.08000 * 119.99607 * 0.02562 * 8 7 5 10 10 C 1.37872 * 119.99901 * 180.02562 * 8 7 5 11 11 N 1.31513 * 120.00231 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99967 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47042 * 59.99961 * 12 10 8 14 14 H 1.48506 * 109.47503 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47228 * 300.00010 * 12 10 8 16 16 C 1.50700 * 109.47349 * 275.00289 * 5 4 2 17 17 C 1.38231 * 119.99825 * 319.86570 * 16 5 4 18 18 C 1.38243 * 120.00070 * 180.02562 * 17 16 5 19 19 C 1.38235 * 119.99602 * 0.07188 * 18 17 16 20 20 C 1.38230 * 120.00326 * 359.97438 * 19 18 17 21 21 C 1.38234 * 120.00292 * 139.99708 * 16 5 4 22 22 C 1.50697 * 109.46957 * 240.00476 * 2 1 3 23 23 C 1.38169 * 120.02865 * 264.99775 * 22 2 1 24 24 C 1.38239 * 120.05637 * 179.97438 * 23 22 2 25 25 C 1.38289 * 120.11272 * 359.97438 * 24 23 22 26 26 C 1.38121 * 120.05695 * 0.02562 * 25 24 23 27 27 C 1.38709 * 120.02983 * 84.71920 * 22 2 1 28 28 O 1.35906 * 120.05743 * 0.02562 * 27 22 2 29 29 H 1.09002 * 109.47011 * 299.99526 * 1 2 3 30 30 H 1.08993 * 109.47496 * 60.00073 * 1 2 3 31 31 H 1.09004 * 109.47141 * 180.02562 * 1 2 3 32 32 H 1.00897 * 111.00352 * 38.95820 * 4 2 1 33 33 H 1.09007 * 109.47393 * 55.00270 * 7 5 4 34 34 H 1.09002 * 109.47408 * 175.00246 * 7 5 4 35 35 H 0.97003 * 120.00096 * 179.97438 * 11 10 8 36 36 H 1.08001 * 120.00367 * 0.10906 * 17 16 5 37 37 H 1.08000 * 119.99728 * 180.34119 * 18 17 16 38 38 H 1.08000 * 119.99297 * 179.97438 * 19 18 17 39 39 H 1.08001 * 120.00350 * 179.97438 * 20 19 18 40 40 H 1.08007 * 119.99474 * 359.97438 * 21 16 5 41 41 H 1.07999 * 119.96992 * 359.97438 * 23 22 2 42 42 H 1.08001 * 119.94630 * 179.97438 * 24 23 22 43 43 H 1.08002 * 119.97180 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.02940 * 179.97438 * 26 25 24 45 45 H 0.96694 * 113.99742 * 89.99177 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0825 0.2225 2.3469 6 1 1.2576 0.9328 2.2907 7 6 1.9772 -0.5798 3.6453 8 6 0.6192 -1.2283 3.7263 9 1 -0.0968 -1.0830 2.9310 10 6 0.2911 -2.0070 4.8157 11 7 1.1632 -2.1843 5.7840 12 14 -1.3924 -2.8102 4.9165 13 1 -1.5773 -3.7194 3.7570 14 1 -1.4947 -3.5892 6.1768 15 1 -2.4434 -1.7614 4.8957 16 6 3.3912 0.9695 2.3227 17 6 4.5559 0.3120 1.9735 18 6 5.7565 0.9970 1.9518 19 6 5.7924 2.3392 2.2809 20 6 4.6278 2.9964 2.6310 21 6 3.4273 2.3114 2.6524 22 6 2.0323 -0.7103 -1.2305 23 6 2.3611 -2.0509 -1.1692 24 6 2.8214 -2.7032 -2.2978 25 6 2.9535 -2.0163 -3.4908 26 6 2.6262 -0.6761 -3.5573 27 6 2.1595 -0.0203 -2.4270 28 8 1.8318 1.2972 -2.4912 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.4497 -1.4980 1.4099 33 1 2.7489 -1.3496 3.6605 34 1 2.1126 0.0872 4.4967 35 1 0.9322 -2.7319 6.5506 36 1 4.5278 -0.7365 1.7162 37 1 6.6655 0.4846 1.6736 38 1 6.7304 2.8742 2.2644 39 1 4.6559 4.0449 2.8885 40 1 2.5175 2.8247 2.9269 41 1 2.2584 -2.5896 -0.2389 42 1 3.0783 -3.7510 -2.2478 43 1 3.3138 -2.5280 -4.3710 44 1 2.7299 -0.1400 -4.4891 45 1 2.5665 1.8950 -2.2966 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183625351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:31 Heat of formation + Delta-G solvation = -2.456456 kcal Electronic energy + Delta-G solvation = -25800.819012 eV Core-core repulsion = 22361.560302 eV Total energy + Delta-G solvation = -3439.258710 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.92694 -38.90516 -36.72807 -36.33187 -33.59013 -32.17572 -30.42489 -30.08082 -29.62012 -28.72327 -27.55408 -24.59804 -23.39720 -22.30552 -22.14016 -21.84761 -20.24681 -19.57977 -18.21038 -16.61781 -16.12629 -16.05852 -15.74361 -15.27681 -14.91082 -14.61192 -14.57028 -14.02704 -13.77260 -13.59741 -13.39184 -12.90019 -12.78461 -12.73698 -12.22853 -12.12395 -12.03716 -12.02290 -11.64657 -11.57970 -11.14368 -11.09384 -10.80993 -10.73076 -10.62144 -10.49166 -10.34789 -10.12834 -9.60587 -9.22347 -8.67111 -8.48117 -8.43044 -8.40213 -8.09062 -7.78339 -6.07329 -4.11645 1.37997 1.50596 1.85278 1.90874 3.27729 3.33452 3.35016 3.77505 4.27788 4.34599 4.39641 4.66729 4.99739 5.10313 5.17858 5.29653 5.32626 5.37800 5.41905 5.50012 5.58037 5.62186 5.68478 5.74024 5.94009 6.00968 6.03189 6.07811 6.15601 6.22383 6.27515 6.42426 6.48295 6.50119 6.56197 6.68048 6.71032 6.73486 6.90905 6.97365 6.97577 7.21013 7.44171 7.52365 7.57618 7.73000 7.90436 7.95749 8.15273 8.28355 8.93969 9.53066 11.03050 Molecular weight = 311.16amu Principal moments of inertia in cm(-1) A = 0.009217 B = 0.005490 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.142760 B = 5099.012717 C = 7056.912511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.128 3.872 3 H 0.080 0.920 4 N -0.674 5.674 5 C 0.128 3.872 6 H 0.043 0.957 7 C 0.030 3.970 8 C -0.527 4.527 9 H 0.054 0.946 10 C 0.064 3.936 11 N -0.888 5.888 12 Si 0.889 3.111 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.278 1.278 16 C -0.053 4.053 17 C -0.086 4.086 18 C -0.131 4.131 19 C -0.138 4.138 20 C -0.128 4.128 21 C -0.124 4.124 22 C -0.080 4.080 23 C -0.080 4.080 24 C -0.132 4.132 25 C -0.117 4.117 26 C -0.151 4.151 27 C 0.100 3.900 28 O -0.498 6.498 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.359 0.641 33 H 0.028 0.972 34 H 0.023 0.977 35 H 0.262 0.738 36 H 0.128 0.872 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.135 0.865 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.040 5.146 -14.645 16.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.018 3.982 3 H 0.098 0.902 4 N -0.307 5.307 5 C 0.019 3.981 6 H 0.061 0.939 7 C -0.008 4.008 8 C -0.565 4.565 9 H 0.072 0.928 10 C -0.138 4.138 11 N -0.527 5.527 12 Si 0.717 3.283 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.054 4.054 17 C -0.104 4.104 18 C -0.149 4.149 19 C -0.156 4.156 20 C -0.146 4.146 21 C -0.143 4.143 22 C -0.082 4.082 23 C -0.099 4.099 24 C -0.150 4.150 25 C -0.135 4.135 26 C -0.170 4.170 27 C 0.055 3.945 28 O -0.307 6.307 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.181 0.819 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.145 0.855 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.153 0.847 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 6.153 4.903 -14.750 16.717 hybrid contribution -1.349 -0.117 0.503 1.445 sum 4.804 4.785 -14.247 15.778 Atomic orbital electron populations 1.22410 0.96286 1.02277 1.02082 1.20225 0.92589 0.96980 0.88415 0.90233 1.60561 1.57214 1.10124 1.02828 1.20642 0.91026 0.93611 0.92833 0.93926 1.19241 0.97323 0.94732 0.89469 1.21094 0.99498 1.30491 1.05388 0.92796 1.24957 0.96821 0.96355 0.95706 1.69951 1.34620 1.38987 1.09099 0.86715 0.84667 0.79538 0.77423 1.20176 1.21284 1.20338 1.20210 0.96342 0.92958 0.95875 1.21042 0.91292 1.00438 0.97661 1.21123 0.97862 0.94601 1.01290 1.20965 0.97662 0.95027 1.01943 1.20964 0.92909 0.99324 1.01398 1.21047 0.97770 0.94449 1.01002 1.20274 0.99134 0.94842 0.93901 1.21033 0.96614 0.93635 0.98589 1.21188 1.00793 1.00008 0.92987 1.20932 1.00645 0.93965 0.97955 1.21284 1.01702 0.95685 0.98287 1.18307 0.99395 0.84388 0.92374 1.84817 1.39444 1.13805 1.92670 0.91897 0.92447 0.92476 0.81853 0.95372 0.95909 0.92827 0.85450 0.86985 0.87167 0.86991 0.86732 0.84708 0.86131 0.86291 0.86088 0.75938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 9.13 37.16 0.34 -2.35 16 2 C 0.13 2.00 2.32 -68.87 -0.16 1.84 16 3 H 0.08 1.27 7.19 -51.93 -0.37 0.89 16 4 N -0.67 -11.78 4.31 -102.18 -0.44 -12.22 16 5 C 0.13 2.49 2.01 -68.86 -0.14 2.35 16 6 H 0.04 0.85 6.97 -51.93 -0.36 0.49 16 7 C 0.03 0.72 4.55 -27.88 -0.13 0.59 16 8 C -0.53 -13.67 8.12 -34.44 -0.28 -13.95 16 9 H 0.05 1.35 7.49 -52.49 -0.39 0.96 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 12 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 C -0.05 -0.95 4.61 -104.63 -0.48 -1.44 16 17 C -0.09 -1.48 9.33 -39.58 -0.37 -1.85 16 18 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 19 C -0.14 -1.94 10.05 -39.59 -0.40 -2.34 16 20 C -0.13 -1.86 10.05 -39.59 -0.40 -2.26 16 21 C -0.12 -2.05 9.67 -39.58 -0.38 -2.43 16 22 C -0.08 -1.17 5.07 -104.47 -0.53 -1.70 16 23 C -0.08 -1.14 9.32 -39.61 -0.37 -1.51 16 24 C -0.13 -1.61 10.04 -39.56 -0.40 -2.01 16 25 C -0.12 -1.33 10.04 -39.61 -0.40 -1.73 16 26 C -0.15 -1.82 9.99 -39.43 -0.39 -2.22 16 27 C 0.10 1.35 6.68 -39.22 -0.26 1.09 16 28 O -0.50 -6.20 12.65 -19.45 -0.25 -6.45 16 29 H 0.06 1.04 7.43 -51.93 -0.39 0.65 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 32 H 0.36 6.84 6.38 -39.29 -0.25 6.58 16 33 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.13 2.25 7.72 -52.49 -0.41 1.84 16 37 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.11 1.79 8.04 -52.48 -0.42 1.36 16 41 H 0.14 1.97 6.89 -52.49 -0.36 1.61 16 42 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.39 3.33 9.06 45.56 0.41 3.74 16 LS Contribution 373.94 15.07 5.64 5.64 Total: -1.00 -29.16 373.94 -10.48 -39.64 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -5.90 Total: 13.10 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: -5.24 Total: -30.61 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.30 Total: -37.13 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.25 Total: -6.45 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.16 -10.48 -39.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183625351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.183 kcal (2) G-P(sol) polarization free energy of solvation -29.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds