Wall clock time and date at job start Fri Apr 10 2020 22:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46653 * 2 1 4 4 N 1.46891 * 109.47220 * 120.00309 * 2 1 3 5 5 C 1.46904 * 111.00126 * 274.99831 * 4 2 1 6 6 H 1.08998 * 109.46722 * 35.00548 * 5 4 2 7 7 C 1.52998 * 109.47123 * 155.00208 * 5 4 2 8 8 C 1.50704 * 109.47215 * 295.00238 * 7 5 4 9 9 H 1.08000 * 119.99607 * 0.02562 * 8 7 5 10 10 C 1.37872 * 119.99901 * 180.02562 * 8 7 5 11 11 N 1.31513 * 120.00231 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99967 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47042 * 59.99961 * 12 10 8 14 14 H 1.48506 * 109.47503 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47228 * 300.00010 * 12 10 8 16 16 C 1.50700 * 109.47349 * 275.00289 * 5 4 2 17 17 C 1.38231 * 119.99825 * 319.86570 * 16 5 4 18 18 C 1.38243 * 120.00070 * 180.02562 * 17 16 5 19 19 C 1.38235 * 119.99602 * 0.07188 * 18 17 16 20 20 C 1.38230 * 120.00326 * 359.97438 * 19 18 17 21 21 C 1.38234 * 120.00292 * 139.99708 * 16 5 4 22 22 C 1.50697 * 109.46957 * 240.00476 * 2 1 3 23 23 C 1.38169 * 120.02865 * 264.99775 * 22 2 1 24 24 C 1.38239 * 120.05637 * 179.97438 * 23 22 2 25 25 C 1.38289 * 120.11272 * 359.97438 * 24 23 22 26 26 C 1.38121 * 120.05695 * 0.02562 * 25 24 23 27 27 C 1.38709 * 120.02983 * 84.71920 * 22 2 1 28 28 O 1.35906 * 120.05743 * 0.02562 * 27 22 2 29 29 H 1.09002 * 109.47011 * 299.99526 * 1 2 3 30 30 H 1.08993 * 109.47496 * 60.00073 * 1 2 3 31 31 H 1.09004 * 109.47141 * 180.02562 * 1 2 3 32 32 H 1.00897 * 111.00352 * 38.95820 * 4 2 1 33 33 H 1.09007 * 109.47393 * 55.00270 * 7 5 4 34 34 H 1.09002 * 109.47408 * 175.00246 * 7 5 4 35 35 H 0.97003 * 120.00096 * 179.97438 * 11 10 8 36 36 H 1.08001 * 120.00367 * 0.10906 * 17 16 5 37 37 H 1.08000 * 119.99728 * 180.34119 * 18 17 16 38 38 H 1.08000 * 119.99297 * 179.97438 * 19 18 17 39 39 H 1.08001 * 120.00350 * 179.97438 * 20 19 18 40 40 H 1.08007 * 119.99474 * 359.97438 * 21 16 5 41 41 H 1.07999 * 119.96992 * 359.97438 * 23 22 2 42 42 H 1.08001 * 119.94630 * 179.97438 * 24 23 22 43 43 H 1.08002 * 119.97180 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.02940 * 179.97438 * 26 25 24 45 45 H 0.96694 * 113.99742 * 89.99177 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0825 0.2225 2.3469 6 1 1.2576 0.9328 2.2907 7 6 1.9772 -0.5798 3.6453 8 6 0.6192 -1.2283 3.7263 9 1 -0.0968 -1.0830 2.9310 10 6 0.2911 -2.0070 4.8157 11 7 1.1632 -2.1843 5.7840 12 14 -1.3924 -2.8102 4.9165 13 1 -1.5773 -3.7194 3.7570 14 1 -1.4947 -3.5892 6.1768 15 1 -2.4434 -1.7614 4.8957 16 6 3.3912 0.9695 2.3227 17 6 4.5559 0.3120 1.9735 18 6 5.7565 0.9970 1.9518 19 6 5.7924 2.3392 2.2809 20 6 4.6278 2.9964 2.6310 21 6 3.4273 2.3114 2.6524 22 6 2.0323 -0.7103 -1.2305 23 6 2.3611 -2.0509 -1.1692 24 6 2.8214 -2.7032 -2.2978 25 6 2.9535 -2.0163 -3.4908 26 6 2.6262 -0.6761 -3.5573 27 6 2.1595 -0.0203 -2.4270 28 8 1.8318 1.2972 -2.4912 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.4497 -1.4980 1.4099 33 1 2.7489 -1.3496 3.6605 34 1 2.1126 0.0872 4.4967 35 1 0.9322 -2.7319 6.5506 36 1 4.5278 -0.7365 1.7162 37 1 6.6655 0.4846 1.6736 38 1 6.7304 2.8742 2.2644 39 1 4.6559 4.0449 2.8885 40 1 2.5175 2.8247 2.9269 41 1 2.2584 -2.5896 -0.2389 42 1 3.0783 -3.7510 -2.2478 43 1 3.3138 -2.5280 -4.3710 44 1 2.7299 -0.1400 -4.4891 45 1 2.5665 1.8950 -2.2966 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183625351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:31 Heat of formation + Delta-G solvation = -18.215026 kcal Electronic energy + Delta-G solvation = -25801.502355 eV Core-core repulsion = 22361.560302 eV Total energy + Delta-G solvation = -3439.942053 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.00717 -40.15778 -37.98316 -37.38556 -35.31857 -33.85114 -31.65412 -31.15144 -30.80149 -30.15708 -29.08703 -26.33363 -24.53136 -23.71719 -23.33322 -23.14671 -21.45059 -20.97681 -19.20295 -18.54201 -17.46877 -17.18160 -16.95620 -16.55072 -16.25079 -16.18113 -15.79644 -15.35966 -14.90885 -14.81294 -14.61709 -14.34896 -14.11739 -14.07470 -13.69197 -13.61768 -13.45280 -13.08123 -12.96092 -12.88813 -12.66295 -12.63693 -12.41418 -12.33421 -12.05445 -11.88222 -11.74776 -11.48474 -11.16304 -11.12344 -10.57442 -9.67730 -9.67624 -9.45671 -9.42564 -9.19878 -8.18692 -6.29588 0.40441 0.51152 0.60198 0.66694 1.39896 1.40847 1.48555 2.39628 2.80282 3.02218 3.12856 3.35554 3.41756 3.86427 4.06873 4.14326 4.18016 4.22942 4.29271 4.30206 4.36015 4.42556 4.55350 4.59180 4.70530 4.76697 4.82539 4.85221 4.87932 4.95512 5.01738 5.15877 5.22858 5.24552 5.31631 5.43457 5.48220 5.53249 5.66045 5.68348 5.70830 5.74539 5.82731 5.92292 6.03219 6.18104 6.27567 6.41589 6.60307 6.84839 6.87534 7.39276 8.92280 Molecular weight = 311.16amu Principal moments of inertia in cm(-1) A = 0.009217 B = 0.005490 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.142760 B = 5099.012717 C = 7056.912511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.137 3.863 3 H 0.075 0.925 4 N -0.667 5.667 5 C 0.144 3.856 6 H 0.032 0.968 7 C 0.043 3.957 8 C -0.531 4.531 9 H 0.061 0.939 10 C 0.010 3.990 11 N -0.928 5.928 12 Si 0.955 3.045 13 H -0.266 1.266 14 H -0.286 1.286 15 H -0.272 1.272 16 C -0.077 4.077 17 C -0.102 4.102 18 C -0.132 4.132 19 C -0.130 4.130 20 C -0.124 4.124 21 C -0.139 4.139 22 C -0.100 4.100 23 C -0.098 4.098 24 C -0.135 4.135 25 C -0.110 4.110 26 C -0.152 4.152 27 C 0.094 3.906 28 O -0.506 6.506 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.347 0.653 33 H -0.001 1.001 34 H -0.011 1.011 35 H 0.262 0.738 36 H 0.112 0.888 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.140 0.860 43 H 0.151 0.849 44 H 0.143 0.857 45 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.826 5.884 -16.932 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.027 3.973 3 H 0.093 0.907 4 N -0.299 5.299 5 C 0.035 3.965 6 H 0.050 0.950 7 C 0.006 3.994 8 C -0.569 4.569 9 H 0.079 0.921 10 C -0.189 4.189 11 N -0.568 5.568 12 Si 0.781 3.219 13 H -0.191 1.191 14 H -0.212 1.212 15 H -0.197 1.197 16 C -0.078 4.078 17 C -0.121 4.121 18 C -0.149 4.149 19 C -0.148 4.148 20 C -0.142 4.142 21 C -0.158 4.158 22 C -0.101 4.101 23 C -0.116 4.116 24 C -0.153 4.153 25 C -0.127 4.127 26 C -0.171 4.171 27 C 0.049 3.951 28 O -0.318 6.318 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.168 0.832 33 H 0.017 0.983 34 H 0.007 0.993 35 H 0.071 0.929 36 H 0.130 0.870 37 H 0.154 0.846 38 H 0.164 0.836 39 H 0.160 0.840 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.157 0.843 43 H 0.169 0.831 44 H 0.161 0.839 45 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 6.946 5.663 -17.058 19.269 hybrid contribution -1.502 -0.290 1.167 1.924 sum 5.444 5.373 -15.891 17.636 Atomic orbital electron populations 1.22334 0.96488 1.01790 1.01748 1.20128 0.92375 0.96688 0.88104 0.90676 1.60581 1.57096 1.09422 1.02792 1.20273 0.92153 0.92908 0.91204 0.94996 1.18992 0.95803 0.93642 0.90992 1.21439 1.00166 1.29970 1.05316 0.92112 1.25813 1.00587 0.97089 0.95414 1.70093 1.36764 1.40112 1.09836 0.85650 0.80033 0.78682 0.77574 1.19062 1.21194 1.19671 1.20102 0.95638 0.93853 0.98159 1.21019 0.92218 1.00020 0.98819 1.21412 0.97684 0.95322 1.00525 1.21392 0.98930 0.94591 0.99918 1.21321 0.92090 1.00714 1.00105 1.21202 0.99091 0.94032 1.01441 1.20187 1.00866 0.95191 0.93836 1.21031 0.97891 0.93735 0.98970 1.21431 1.00186 1.01016 0.92681 1.21309 0.99166 0.93757 0.98516 1.21573 1.00850 0.96126 0.98513 1.18421 0.99447 0.84821 0.92400 1.84768 1.40669 1.13723 1.92645 0.93291 0.91531 0.92986 0.83211 0.98309 0.99316 0.92886 0.86965 0.84601 0.83576 0.83965 0.86648 0.86267 0.84257 0.83117 0.83876 0.74120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.29 9.13 71.98 0.66 -4.64 16 2 C 0.14 4.40 2.32 44.17 0.10 4.51 16 3 H 0.08 2.46 7.19 -2.39 -0.02 2.44 16 4 N -0.67 -24.69 4.31 -477.17 -2.05 -26.75 16 5 C 0.14 5.96 2.01 44.17 0.09 6.05 16 6 H 0.03 1.36 6.97 -2.39 -0.02 1.35 16 7 C 0.04 2.23 4.55 29.85 0.14 2.36 16 8 C -0.53 -28.73 8.12 25.60 0.21 -28.52 16 9 H 0.06 3.14 7.49 -2.91 -0.02 3.12 16 10 C 0.01 0.53 5.46 84.65 0.46 1.00 16 11 N -0.93 -55.64 13.29 21.45 0.28 -55.35 16 12 Si 0.96 43.56 29.54 68.60 2.03 45.58 16 13 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 14 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 16 C -0.08 -2.86 4.61 -19.87 -0.09 -2.95 16 17 C -0.10 -3.59 9.33 22.27 0.21 -3.38 16 18 C -0.13 -3.75 10.05 22.27 0.22 -3.53 16 19 C -0.13 -3.29 10.05 22.27 0.22 -3.07 16 20 C -0.12 -3.35 10.05 22.27 0.22 -3.13 16 21 C -0.14 -4.60 9.67 22.27 0.22 -4.39 16 22 C -0.10 -2.92 5.07 -19.77 -0.10 -3.02 16 23 C -0.10 -2.79 9.32 22.25 0.21 -2.59 16 24 C -0.14 -3.11 10.04 22.28 0.22 -2.89 16 25 C -0.11 -2.18 10.04 22.25 0.22 -1.96 16 26 C -0.15 -3.28 9.99 22.37 0.22 -3.06 16 27 C 0.09 2.42 6.68 22.51 0.15 2.57 16 28 O -0.51 -11.93 12.65 -92.50 -1.17 -13.10 16 29 H 0.05 1.67 7.43 -2.39 -0.02 1.65 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 1.69 8.13 -2.38 -0.02 1.67 16 32 H 0.35 14.09 6.38 -89.70 -0.57 13.52 16 33 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 34 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 35 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 36 H 0.11 4.18 7.72 -2.91 -0.02 4.16 16 37 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 39 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 40 H 0.12 3.68 8.04 -2.91 -0.02 3.66 16 41 H 0.12 3.69 6.89 -2.91 -0.02 3.67 16 42 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 43 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 44 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 45 H 0.40 6.37 9.06 -74.06 -0.67 5.70 16 Total: -1.00 -65.18 373.94 2.42 -62.76 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.25 Total: 37.50 kcal Atomic # 6 Polarization: -54.22 SS G_CDS: 3.58 Total: -50.64 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -1.77 Total: -82.10 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -1.17 Total: -13.10 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -65.18 2.42 -62.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183625351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.545 kcal (2) G-P(sol) polarization free energy of solvation -65.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds