Wall clock time and date at job start Fri Apr 10 2020 22:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47325 * 2 1 4 4 N 1.46899 * 109.46850 * 119.99483 * 2 1 3 5 5 C 1.46903 * 111.00407 * 274.99998 * 4 2 1 6 6 H 1.09001 * 109.46749 * 325.00284 * 5 4 2 7 7 C 1.52998 * 109.47199 * 204.99823 * 5 4 2 8 8 C 1.50699 * 109.47053 * 65.00143 * 7 5 4 9 9 H 1.08004 * 119.99695 * 359.97438 * 8 7 5 10 10 C 1.37875 * 120.00251 * 179.97438 * 8 7 5 11 11 N 1.31515 * 120.00366 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99722 * 359.97438 * 10 8 7 13 13 H 1.48510 * 109.47197 * 90.00062 * 12 10 8 14 14 H 1.48500 * 109.47145 * 209.99631 * 12 10 8 15 15 H 1.48503 * 109.47272 * 330.00162 * 12 10 8 16 16 C 1.50702 * 109.46915 * 84.99732 * 5 4 2 17 17 C 1.38234 * 119.99895 * 39.73135 * 16 5 4 18 18 C 1.38240 * 120.00061 * 180.34228 * 17 16 5 19 19 C 1.38234 * 119.99667 * 359.88520 * 18 17 16 20 20 C 1.38234 * 120.00244 * 0.09088 * 19 18 17 21 21 C 1.38230 * 119.99880 * 359.97438 * 20 19 18 22 22 C 1.50697 * 109.47167 * 239.99653 * 2 1 3 23 23 C 1.38168 * 120.02637 * 264.99915 * 22 2 1 24 24 C 1.38240 * 120.05525 * 179.97438 * 23 22 2 25 25 C 1.38288 * 120.11154 * 0.02562 * 24 23 22 26 26 C 1.38119 * 120.05542 * 0.02562 * 25 24 23 27 27 C 1.38710 * 120.02770 * 84.72422 * 22 2 1 28 28 O 1.35895 * 120.05663 * 0.02562 * 27 22 2 29 29 H 1.08997 * 109.47452 * 300.00355 * 1 2 3 30 30 H 1.09002 * 109.46889 * 60.00085 * 1 2 3 31 31 H 1.08996 * 109.47325 * 179.97438 * 1 2 3 32 32 H 1.00898 * 111.00485 * 151.04410 * 4 2 1 33 33 H 1.08998 * 109.46578 * 184.99959 * 7 5 4 34 34 H 1.08991 * 109.47306 * 305.00165 * 7 5 4 35 35 H 0.96995 * 120.00515 * 180.02562 * 11 10 8 36 36 H 1.08001 * 120.00279 * 0.27436 * 17 16 5 37 37 H 1.07996 * 119.99812 * 180.02562 * 18 17 16 38 38 H 1.07999 * 119.99733 * 180.10835 * 19 18 17 39 39 H 1.08001 * 119.99769 * 180.02562 * 20 19 18 40 40 H 1.08000 * 120.00376 * 180.02562 * 21 20 19 41 41 H 1.08001 * 119.97261 * 359.97438 * 23 22 2 42 42 H 1.08000 * 119.94698 * 180.02562 * 24 23 22 43 43 H 1.08006 * 119.97416 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.02935 * 179.97438 * 26 25 24 45 45 H 0.96703 * 113.99977 * 90.00089 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3470 6 1 2.3648 1.2178 2.0030 7 6 3.1220 -0.2851 3.3480 8 6 4.4912 -0.2323 2.7206 9 1 4.6080 0.1271 1.7089 10 6 5.5946 -0.6428 3.4382 11 7 6.7896 -0.5963 2.8908 12 14 5.3925 -1.2638 5.1883 13 1 5.1677 -2.7316 5.1699 14 1 6.6208 -0.9609 5.9659 15 1 4.2283 -0.5926 5.8204 16 6 0.7322 0.2860 3.0134 17 6 -0.0233 -0.8629 3.1547 18 6 -1.2649 -0.8036 3.7597 19 6 -1.7498 0.4042 4.2255 20 6 -0.9940 1.5530 4.0847 21 6 0.2469 1.4940 3.4785 22 6 2.0323 -0.7105 -1.2304 23 6 2.3611 -2.0510 -1.1689 24 6 2.8215 -2.7035 -2.2973 25 6 2.9547 -2.0165 -3.4901 26 6 2.6283 -0.6761 -3.5565 27 6 2.1596 -0.0205 -2.4270 28 8 1.8321 1.2968 -2.4913 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.9172 -1.1205 1.0289 33 1 3.1059 0.3432 4.2386 34 1 2.8884 -1.3132 3.6244 35 1 7.5658 -0.8854 3.3955 36 1 0.3558 -1.8066 2.7914 37 1 -1.8550 -1.7013 3.8704 38 1 -2.7190 0.4502 4.6997 39 1 -1.3727 2.4966 4.4490 40 1 0.8377 2.3914 3.3688 41 1 2.2584 -2.5896 -0.2384 42 1 3.0776 -3.7515 -2.2474 43 1 3.3149 -2.5284 -4.3703 44 1 2.7329 -0.1399 -4.4882 45 1 2.5668 1.8947 -2.2967 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183625382.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:39 Heat of formation + Delta-G solvation = 3.476328 kcal Electronic energy + Delta-G solvation = -25829.299227 eV Core-core repulsion = 22390.297782 eV Total energy + Delta-G solvation = -3439.001445 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.97147 -39.02758 -36.69003 -36.26631 -33.61630 -32.19290 -30.50165 -29.97628 -29.79194 -29.08985 -27.91505 -24.69525 -23.24346 -22.29093 -22.12666 -21.66526 -20.12034 -19.52350 -18.18951 -17.08039 -16.30510 -16.16428 -15.69962 -15.24796 -14.96467 -14.62780 -14.50995 -14.16074 -13.75044 -13.68644 -13.43685 -12.95127 -12.82081 -12.62719 -12.50620 -12.22888 -11.97958 -11.94481 -11.72180 -11.59016 -11.25618 -11.16701 -10.97123 -10.76198 -10.66499 -10.37007 -10.14931 -9.93826 -9.79219 -9.29768 -8.66993 -8.62596 -8.51442 -8.40787 -8.14662 -7.88991 -6.13429 -4.12977 1.39545 1.50479 1.77528 1.82767 3.27005 3.35038 3.39835 3.78875 4.20770 4.37530 4.38730 4.63980 4.92314 5.09651 5.18937 5.23926 5.25956 5.31221 5.36271 5.49525 5.57337 5.63687 5.73823 5.78134 5.92847 5.98249 6.00148 6.09896 6.16073 6.22277 6.26902 6.33300 6.42980 6.50049 6.53262 6.59892 6.65617 6.68248 6.83070 6.88696 6.98200 7.10586 7.13098 7.19569 7.42087 7.67054 7.75365 7.80785 8.10957 8.39156 8.87184 9.48812 10.99104 Molecular weight = 311.16amu Principal moments of inertia in cm(-1) A = 0.008591 B = 0.005984 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.550008 B = 4677.691786 C = 7012.351400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.132 3.868 3 H 0.049 0.951 4 N -0.677 5.677 5 C 0.137 3.863 6 H 0.047 0.953 7 C -0.009 4.009 8 C -0.525 4.525 9 H 0.070 0.930 10 C 0.073 3.927 11 N -0.898 5.898 12 Si 0.878 3.122 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.265 1.265 16 C -0.053 4.053 17 C -0.088 4.088 18 C -0.130 4.130 19 C -0.137 4.137 20 C -0.126 4.126 21 C -0.125 4.125 22 C -0.101 4.101 23 C -0.087 4.087 24 C -0.128 4.128 25 C -0.113 4.113 26 C -0.150 4.150 27 C 0.105 3.895 28 O -0.498 6.498 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.363 0.637 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.264 0.736 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.139 0.861 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.482 0.062 -6.991 14.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.023 3.977 3 H 0.066 0.934 4 N -0.312 5.312 5 C 0.027 3.973 6 H 0.065 0.935 7 C -0.047 4.047 8 C -0.563 4.563 9 H 0.088 0.912 10 C -0.129 4.129 11 N -0.537 5.537 12 Si 0.705 3.295 13 H -0.202 1.202 14 H -0.215 1.215 15 H -0.189 1.189 16 C -0.054 4.054 17 C -0.106 4.106 18 C -0.148 4.148 19 C -0.155 4.155 20 C -0.145 4.145 21 C -0.143 4.143 22 C -0.102 4.102 23 C -0.105 4.105 24 C -0.146 4.146 25 C -0.131 4.131 26 C -0.168 4.168 27 C 0.060 3.940 28 O -0.308 6.308 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.187 0.813 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.146 0.854 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.157 0.843 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -13.434 -0.438 -6.933 15.124 hybrid contribution 1.354 0.458 0.789 1.632 sum -12.080 0.020 -6.145 13.553 Atomic orbital electron populations 1.21785 0.93884 1.01831 1.01153 1.20268 0.95621 0.95082 0.86777 0.93350 1.60626 1.35262 1.32370 1.02942 1.20460 0.90701 0.94742 0.91359 0.93521 1.19740 0.93648 0.96655 0.94625 1.21007 0.89531 1.44134 1.01654 0.91188 1.24959 0.95103 0.94866 0.97988 1.69904 0.98534 1.47665 1.37563 0.86806 0.77757 0.79679 0.85253 1.20162 1.21455 1.18942 1.20180 0.96056 0.92724 0.96439 1.21045 0.93412 0.98998 0.97175 1.21124 0.96634 0.97365 0.99698 1.20981 0.99679 0.93170 1.01651 1.20979 0.95092 0.97971 1.00419 1.21052 0.95883 0.97681 0.99694 1.20398 1.00125 0.95109 0.94588 1.21090 0.96820 0.93552 0.99055 1.21187 1.00317 1.00176 0.92935 1.20970 1.00120 0.93952 0.98037 1.21312 1.01437 0.95684 0.98376 1.18287 0.98911 0.84426 0.92344 1.84794 1.39593 1.13758 1.92667 0.92063 0.93186 0.92570 0.81328 0.95867 0.95837 0.92646 0.85385 0.86890 0.87096 0.86910 0.86630 0.84316 0.85928 0.86097 0.85910 0.75664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.83 37.16 0.33 -1.61 16 2 C 0.13 2.12 2.55 -68.87 -0.18 1.94 16 3 H 0.05 0.82 6.99 -51.93 -0.36 0.46 16 4 N -0.68 -11.90 4.67 -102.17 -0.48 -12.38 16 5 C 0.14 2.61 2.19 -68.86 -0.15 2.46 16 6 H 0.05 0.93 7.29 -51.93 -0.38 0.56 16 7 C -0.01 -0.21 3.62 -27.88 -0.10 -0.31 16 8 C -0.53 -13.92 8.67 -34.44 -0.30 -14.22 16 9 H 0.07 1.99 7.73 -52.48 -0.41 1.58 16 10 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 11 N -0.90 -26.58 13.96 55.43 0.77 -25.81 16 12 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 16 C -0.05 -0.91 2.95 -104.62 -0.31 -1.22 16 17 C -0.09 -1.42 8.59 -39.58 -0.34 -1.76 16 18 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 19 C -0.14 -1.83 10.05 -39.58 -0.40 -2.23 16 20 C -0.13 -1.77 10.05 -39.59 -0.40 -2.16 16 21 C -0.12 -1.97 9.65 -39.59 -0.38 -2.35 16 22 C -0.10 -1.56 4.94 -104.47 -0.52 -2.08 16 23 C -0.09 -1.30 8.86 -39.61 -0.35 -1.65 16 24 C -0.13 -1.69 10.04 -39.56 -0.40 -2.08 16 25 C -0.11 -1.39 10.04 -39.61 -0.40 -1.79 16 26 C -0.15 -1.95 9.99 -39.43 -0.39 -2.34 16 27 C 0.11 1.52 6.68 -39.22 -0.26 1.26 16 28 O -0.50 -6.62 12.65 -19.41 -0.25 -6.87 16 29 H 0.06 0.96 5.93 -51.93 -0.31 0.65 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.36 7.12 5.74 -39.29 -0.23 6.89 16 33 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 34 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.13 2.09 7.71 -52.49 -0.40 1.68 16 37 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.12 1.73 8.04 -52.49 -0.42 1.31 16 41 H 0.14 2.07 6.97 -52.49 -0.37 1.71 16 42 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 44 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 45 H 0.39 3.76 9.06 45.56 0.41 4.18 16 LS Contribution 365.87 15.07 5.51 5.51 Total: -1.00 -29.85 365.87 -9.92 -39.76 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -5.78 Total: 13.66 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: -5.04 Total: -30.44 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.30 Total: -38.19 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.25 Total: -6.87 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.85 -9.92 -39.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183625382.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.241 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds