Wall clock time and date at job start Fri Apr 10 2020 22:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47325 * 2 1 4 4 N 1.46899 * 109.46850 * 119.99483 * 2 1 3 5 5 C 1.46903 * 111.00407 * 274.99998 * 4 2 1 6 6 H 1.09001 * 109.46749 * 325.00284 * 5 4 2 7 7 C 1.52998 * 109.47199 * 204.99823 * 5 4 2 8 8 C 1.50699 * 109.47053 * 65.00143 * 7 5 4 9 9 H 1.08004 * 119.99695 * 359.97438 * 8 7 5 10 10 C 1.37875 * 120.00251 * 179.97438 * 8 7 5 11 11 N 1.31515 * 120.00366 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99722 * 359.97438 * 10 8 7 13 13 H 1.48510 * 109.47197 * 90.00062 * 12 10 8 14 14 H 1.48500 * 109.47145 * 209.99631 * 12 10 8 15 15 H 1.48503 * 109.47272 * 330.00162 * 12 10 8 16 16 C 1.50702 * 109.46915 * 84.99732 * 5 4 2 17 17 C 1.38234 * 119.99895 * 39.73135 * 16 5 4 18 18 C 1.38240 * 120.00061 * 180.34228 * 17 16 5 19 19 C 1.38234 * 119.99667 * 359.88520 * 18 17 16 20 20 C 1.38234 * 120.00244 * 0.09088 * 19 18 17 21 21 C 1.38230 * 119.99880 * 359.97438 * 20 19 18 22 22 C 1.50697 * 109.47167 * 239.99653 * 2 1 3 23 23 C 1.38168 * 120.02637 * 264.99915 * 22 2 1 24 24 C 1.38240 * 120.05525 * 179.97438 * 23 22 2 25 25 C 1.38288 * 120.11154 * 0.02562 * 24 23 22 26 26 C 1.38119 * 120.05542 * 0.02562 * 25 24 23 27 27 C 1.38710 * 120.02770 * 84.72422 * 22 2 1 28 28 O 1.35895 * 120.05663 * 0.02562 * 27 22 2 29 29 H 1.08997 * 109.47452 * 300.00355 * 1 2 3 30 30 H 1.09002 * 109.46889 * 60.00085 * 1 2 3 31 31 H 1.08996 * 109.47325 * 179.97438 * 1 2 3 32 32 H 1.00898 * 111.00485 * 151.04410 * 4 2 1 33 33 H 1.08998 * 109.46578 * 184.99959 * 7 5 4 34 34 H 1.08991 * 109.47306 * 305.00165 * 7 5 4 35 35 H 0.96995 * 120.00515 * 180.02562 * 11 10 8 36 36 H 1.08001 * 120.00279 * 0.27436 * 17 16 5 37 37 H 1.07996 * 119.99812 * 180.02562 * 18 17 16 38 38 H 1.07999 * 119.99733 * 180.10835 * 19 18 17 39 39 H 1.08001 * 119.99769 * 180.02562 * 20 19 18 40 40 H 1.08000 * 120.00376 * 180.02562 * 21 20 19 41 41 H 1.08001 * 119.97261 * 359.97438 * 23 22 2 42 42 H 1.08000 * 119.94698 * 180.02562 * 24 23 22 43 43 H 1.08006 * 119.97416 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.02935 * 179.97438 * 26 25 24 45 45 H 0.96703 * 113.99977 * 90.00089 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3470 6 1 2.3648 1.2178 2.0030 7 6 3.1220 -0.2851 3.3480 8 6 4.4912 -0.2323 2.7206 9 1 4.6080 0.1271 1.7089 10 6 5.5946 -0.6428 3.4382 11 7 6.7896 -0.5963 2.8908 12 14 5.3925 -1.2638 5.1883 13 1 5.1677 -2.7316 5.1699 14 1 6.6208 -0.9609 5.9659 15 1 4.2283 -0.5926 5.8204 16 6 0.7322 0.2860 3.0134 17 6 -0.0233 -0.8629 3.1547 18 6 -1.2649 -0.8036 3.7597 19 6 -1.7498 0.4042 4.2255 20 6 -0.9940 1.5530 4.0847 21 6 0.2469 1.4940 3.4785 22 6 2.0323 -0.7105 -1.2304 23 6 2.3611 -2.0510 -1.1689 24 6 2.8215 -2.7035 -2.2973 25 6 2.9547 -2.0165 -3.4901 26 6 2.6283 -0.6761 -3.5565 27 6 2.1596 -0.0205 -2.4270 28 8 1.8321 1.2968 -2.4913 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.9172 -1.1205 1.0289 33 1 3.1059 0.3432 4.2386 34 1 2.8884 -1.3132 3.6244 35 1 7.5658 -0.8854 3.3955 36 1 0.3558 -1.8066 2.7914 37 1 -1.8550 -1.7013 3.8704 38 1 -2.7190 0.4502 4.6997 39 1 -1.3727 2.4966 4.4490 40 1 0.8377 2.3914 3.3688 41 1 2.2584 -2.5896 -0.2384 42 1 3.0776 -3.7515 -2.2474 43 1 3.3149 -2.5284 -4.3703 44 1 2.7329 -0.1399 -4.4882 45 1 2.5668 1.8947 -2.2967 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183625382.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:38:38 Heat of formation + Delta-G solvation = -13.641803 kcal Electronic energy + Delta-G solvation = -25830.041525 eV Core-core repulsion = 22390.297782 eV Total energy + Delta-G solvation = -3439.743743 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.163 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.11744 -40.22378 -37.92194 -37.41545 -35.31477 -33.94205 -31.64729 -31.16702 -31.04396 -30.44229 -29.37473 -26.30180 -24.42679 -23.49094 -23.38390 -23.06930 -21.38666 -20.91038 -19.26907 -19.07117 -17.52174 -17.39973 -16.88297 -16.50378 -16.27420 -16.17549 -15.79793 -15.54986 -15.01920 -14.79658 -14.77523 -14.59414 -14.07293 -14.04916 -13.83895 -13.61039 -13.45171 -13.14764 -13.03372 -12.76253 -12.70224 -12.65117 -12.29832 -12.24470 -11.99823 -11.84328 -11.73637 -11.53279 -11.30058 -11.14795 -10.77709 -9.75917 -9.67014 -9.51145 -9.39780 -9.31768 -8.30172 -6.33338 0.32681 0.42649 0.60385 0.67112 1.34200 1.36360 1.47398 2.34313 2.73361 2.99808 3.05467 3.30117 3.36005 3.72886 4.01713 4.10498 4.15383 4.19188 4.29788 4.34106 4.40498 4.44659 4.53555 4.58887 4.67364 4.70511 4.78705 4.85886 4.89274 4.94760 5.01896 5.12561 5.16691 5.26821 5.29005 5.34207 5.36205 5.44774 5.54971 5.59106 5.59923 5.72298 5.76575 5.89679 5.96163 6.20966 6.27056 6.35736 6.54053 6.71624 6.78730 7.31186 8.85431 Molecular weight = 311.16amu Principal moments of inertia in cm(-1) A = 0.008591 B = 0.005984 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.550008 B = 4677.691786 C = 7012.351400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.138 3.862 3 H 0.033 0.967 4 N -0.668 5.668 5 C 0.147 3.853 6 H 0.027 0.973 7 C 0.000 4.000 8 C -0.520 4.520 9 H 0.037 0.963 10 C 0.017 3.983 11 N -0.943 5.943 12 Si 0.940 3.060 13 H -0.267 1.267 14 H -0.286 1.286 15 H -0.255 1.255 16 C -0.072 4.072 17 C -0.100 4.100 18 C -0.130 4.130 19 C -0.130 4.130 20 C -0.125 4.125 21 C -0.140 4.140 22 C -0.124 4.124 23 C -0.104 4.104 24 C -0.134 4.134 25 C -0.108 4.108 26 C -0.153 4.153 27 C 0.093 3.907 28 O -0.505 6.505 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.348 0.652 33 H 0.017 0.983 34 H 0.023 0.977 35 H 0.265 0.735 36 H 0.119 0.881 37 H 0.138 0.862 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.114 0.886 41 H 0.130 0.870 42 H 0.144 0.856 43 H 0.154 0.846 44 H 0.145 0.855 45 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.674 -0.482 -6.613 16.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.028 3.972 3 H 0.051 0.949 4 N -0.301 5.301 5 C 0.037 3.963 6 H 0.045 0.955 7 C -0.038 4.038 8 C -0.558 4.558 9 H 0.055 0.945 10 C -0.181 4.181 11 N -0.584 5.584 12 Si 0.765 3.235 13 H -0.192 1.192 14 H -0.212 1.212 15 H -0.179 1.179 16 C -0.073 4.073 17 C -0.118 4.118 18 C -0.147 4.147 19 C -0.148 4.148 20 C -0.143 4.143 21 C -0.158 4.158 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.152 4.152 25 C -0.126 4.126 26 C -0.171 4.171 27 C 0.049 3.951 28 O -0.317 6.317 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.169 0.831 33 H 0.035 0.965 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.132 0.868 41 H 0.147 0.853 42 H 0.162 0.838 43 H 0.171 0.829 44 H 0.163 0.837 45 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -15.651 -0.967 -6.557 16.996 hybrid contribution 2.006 0.678 0.577 2.194 sum -13.645 -0.289 -5.980 14.900 Atomic orbital electron populations 1.21634 0.92935 1.01667 1.00932 1.20202 0.96200 0.94133 0.86645 0.94925 1.60693 1.33989 1.32033 1.03388 1.20218 0.91423 0.93594 0.91101 0.95476 1.19598 0.92655 0.96526 0.95011 1.21222 0.91521 1.42751 1.00347 0.94502 1.25789 0.94741 0.95357 1.02215 1.70038 0.99454 1.49476 1.39392 0.85803 0.77967 0.79506 0.80234 1.19191 1.21170 1.17873 1.19962 0.95258 0.94027 0.98014 1.21044 0.94496 0.98173 0.98128 1.21419 0.95790 0.98912 0.98617 1.21396 1.00697 0.92365 1.00356 1.21305 0.94060 0.99594 0.99316 1.21185 0.97107 0.97156 1.00363 1.20427 1.01713 0.95613 0.94727 1.21146 0.97900 0.93597 0.99603 1.21482 0.99701 1.01301 0.92670 1.21369 0.98741 0.93734 0.98730 1.21619 1.00662 0.96207 0.98628 1.18466 0.99230 0.84873 0.92572 1.84743 1.40653 1.13678 1.92652 0.92572 0.92890 0.92600 0.83050 0.96510 0.95847 0.92557 0.86308 0.84401 0.83770 0.84214 0.86762 0.85260 0.83846 0.82853 0.83721 0.74137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.49 8.83 71.98 0.64 -2.85 16 2 C 0.14 4.62 2.55 44.17 0.11 4.74 16 3 H 0.03 1.19 6.99 -2.39 -0.02 1.17 16 4 N -0.67 -24.73 4.67 -477.16 -2.23 -26.96 16 5 C 0.15 5.82 2.19 44.17 0.10 5.92 16 6 H 0.03 1.16 7.29 -2.39 -0.02 1.15 16 7 C 0.00 -0.01 3.62 29.85 0.11 0.10 16 8 C -0.52 -28.73 8.67 25.60 0.22 -28.51 16 9 H 0.04 2.23 7.73 -2.91 -0.02 2.21 16 10 C 0.02 0.96 5.47 84.65 0.46 1.42 16 11 N -0.94 -57.56 13.96 21.45 0.30 -57.26 16 12 Si 0.94 44.17 27.47 68.60 1.88 46.05 16 13 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 14 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 15 H -0.25 -11.45 6.54 99.48 0.65 -10.80 16 16 C -0.07 -2.47 2.95 -19.87 -0.06 -2.53 16 17 C -0.10 -3.15 8.59 22.27 0.19 -2.96 16 18 C -0.13 -3.32 10.05 22.27 0.22 -3.10 16 19 C -0.13 -3.03 10.05 22.27 0.22 -2.80 16 20 C -0.12 -3.15 10.05 22.27 0.22 -2.93 16 21 C -0.14 -4.32 9.65 22.27 0.21 -4.11 16 22 C -0.12 -3.95 4.94 -19.77 -0.10 -4.05 16 23 C -0.10 -3.19 8.86 22.25 0.20 -2.99 16 24 C -0.13 -3.41 10.04 22.28 0.22 -3.19 16 25 C -0.11 -2.45 10.04 22.25 0.22 -2.23 16 26 C -0.15 -3.77 9.99 22.37 0.22 -3.55 16 27 C 0.09 2.71 6.68 22.51 0.15 2.86 16 28 O -0.51 -13.49 12.65 -92.36 -1.17 -14.66 16 29 H 0.06 1.76 5.93 -2.39 -0.01 1.75 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.35 14.59 5.74 -89.70 -0.51 14.07 16 33 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 34 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16 35 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.12 3.88 7.71 -2.91 -0.02 3.86 16 37 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 38 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 39 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.11 3.45 8.04 -2.91 -0.02 3.43 16 41 H 0.13 4.08 6.97 -2.91 -0.02 4.06 16 42 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 43 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 44 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 45 H 0.40 7.98 9.06 -74.06 -0.67 7.31 16 Total: -1.00 -65.77 365.87 2.12 -63.65 By element: Atomic # 1 Polarization: 40.16 SS G_CDS: -0.24 Total: 39.92 kcal Atomic # 6 Polarization: -54.31 SS G_CDS: 3.58 Total: -50.74 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -1.93 Total: -84.22 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -1.17 Total: -14.66 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Total: -65.77 2.12 -63.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183625382.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.009 kcal (2) G-P(sol) polarization free energy of solvation -65.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds