Wall clock time and date at job start Fri Apr 10 2020 22:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47298 * 2 1 4 4 C 1.50696 * 109.47185 * 120.00082 * 2 1 3 5 5 C 1.38239 * 120.00326 * 79.72825 * 4 2 1 6 6 C 1.38227 * 120.00528 * 179.81315 * 5 4 2 7 7 C 1.38245 * 119.99751 * 0.38805 * 6 5 4 8 8 C 1.38234 * 119.99873 * 359.86601 * 7 6 5 9 9 C 1.38235 * 120.00106 * 259.99664 * 4 2 1 10 10 N 1.46902 * 109.46907 * 240.00066 * 2 1 3 11 11 C 1.46904 * 111.00031 * 183.95223 * 10 2 1 12 12 C 1.46901 * 110.99878 * 60.00210 * 10 2 1 13 13 C 1.50707 * 109.46748 * 189.99849 * 12 10 2 14 14 C 1.38302 * 119.93031 * 89.99827 * 13 12 10 15 15 C 1.38101 * 120.06877 * 180.02562 * 14 13 12 16 16 C 1.38876 * 119.92956 * 359.97438 * 15 14 13 17 17 O 1.35750 * 120.06861 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53840 * 17 16 15 19 19 H 1.08003 * 120.00029 * 354.94359 * 18 17 16 20 20 C 1.38659 * 120.00122 * 174.94542 * 18 17 16 21 21 N 1.31558 * 119.99705 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00035 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47181 * 89.99980 * 22 20 18 24 24 H 1.48498 * 109.47260 * 210.00361 * 22 20 18 25 25 H 1.48502 * 109.47130 * 330.00179 * 22 20 18 26 26 C 1.38880 * 119.86555 * 0.27954 * 16 15 14 27 27 C 1.38105 * 119.92781 * 359.48865 * 26 16 15 28 28 H 1.08998 * 109.46866 * 299.99600 * 1 2 3 29 29 H 1.08998 * 109.47138 * 60.00080 * 1 2 3 30 30 H 1.09000 * 109.46570 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.99467 * 359.97438 * 5 4 2 32 32 H 1.07999 * 120.00323 * 180.22922 * 6 5 4 33 33 H 1.07997 * 119.99691 * 179.83241 * 7 6 5 34 34 H 1.08002 * 119.99875 * 179.97438 * 8 7 6 35 35 H 1.07997 * 119.99942 * 359.97438 * 9 4 2 36 36 H 1.08999 * 109.46915 * 296.04880 * 11 10 2 37 37 H 1.09000 * 109.46651 * 56.04391 * 11 10 2 38 38 H 1.08993 * 109.47610 * 176.04663 * 11 10 2 39 39 H 1.09002 * 109.47230 * 70.00113 * 12 10 2 40 40 H 1.08995 * 109.47139 * 309.99424 * 12 10 2 41 41 H 1.07999 * 119.96521 * 0.02562 * 14 13 12 42 42 H 1.07997 * 120.03156 * 179.97438 * 15 14 13 43 43 H 0.96997 * 119.99350 * 179.97438 * 21 20 18 44 44 H 1.07996 * 120.04097 * 179.72435 * 26 16 15 45 45 H 1.07996 * 119.96589 * 180.23432 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.0616 -2.0920 1.2675 6 6 2.5259 -2.7436 2.3946 7 6 2.9537 -2.0137 3.4879 8 6 2.9197 -0.6322 3.4529 9 6 2.4589 0.0194 2.3242 10 7 2.0197 -0.6925 -1.1995 11 6 3.4851 -0.7945 -1.1871 12 6 1.5487 -0.0263 -2.4211 13 6 1.8580 -0.8911 -3.6159 14 6 0.9359 -1.8272 -4.0474 15 6 1.2166 -2.6216 -5.1417 16 6 2.4260 -2.4792 -5.8093 17 8 2.7046 -3.2582 -6.8856 18 6 1.7213 -4.0690 -7.3254 19 1 0.7934 -4.1389 -6.7771 20 6 1.9013 -4.8132 -8.4814 21 7 0.9415 -5.6039 -8.9107 22 14 3.5059 -4.6917 -9.4300 23 1 4.4593 -5.7108 -8.9224 24 1 3.2474 -4.9307 -10.8726 25 1 4.0866 -3.3370 -9.2489 26 6 3.3521 -1.5419 -5.3704 27 6 3.0635 -0.7472 -4.2784 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.7239 -2.6622 0.4146 32 1 2.5522 -3.8229 2.4221 33 1 3.3140 -2.5229 4.3696 34 1 3.2535 -0.0620 4.3072 35 1 2.4324 1.0987 2.2968 36 1 3.9192 0.2044 -1.2301 37 1 3.8070 -1.2915 -0.2720 38 1 3.8164 -1.3721 -2.0501 39 1 2.0519 0.9346 -2.5280 40 1 0.4723 0.1324 -2.3564 41 1 -0.0046 -1.9372 -3.5281 42 1 0.4963 -3.3527 -5.4779 43 1 1.0674 -6.1242 -9.7196 44 1 4.2953 -1.4319 -5.8847 45 1 3.7816 -0.0156 -3.9388 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264109463.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:15 Heat of formation + Delta-G solvation = 17.795791 kcal Electronic energy + Delta-G solvation = -24733.060366 eV Core-core repulsion = 21294.679860 eV Total energy + Delta-G solvation = -3438.380507 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.05116 -40.53706 -38.99569 -37.56189 -34.49390 -33.49332 -31.90332 -31.72906 -31.03212 -30.45579 -27.95357 -26.65607 -25.31042 -23.87094 -23.50675 -23.25222 -21.77815 -20.79276 -19.80661 -19.07392 -17.78205 -17.02851 -16.71553 -16.52859 -16.09580 -15.82474 -15.74548 -15.57995 -15.29934 -15.15382 -14.64346 -14.46689 -14.27616 -14.14234 -14.09784 -13.97107 -13.68213 -13.18047 -13.08046 -13.00633 -12.63619 -12.52906 -12.47980 -12.32482 -12.24422 -12.05553 -11.86190 -11.75113 -11.51228 -11.24079 -10.89495 -9.77009 -9.74352 -9.53693 -9.24607 -8.93119 -8.49704 -6.22067 0.48245 0.57650 0.59373 0.65858 1.31083 1.35625 1.51389 2.28042 2.69040 2.90693 3.00845 3.13846 3.31750 3.74988 4.00538 4.05154 4.09328 4.18436 4.23110 4.31331 4.36833 4.39986 4.42830 4.52303 4.59840 4.67386 4.68709 4.76414 4.78331 4.84964 4.89095 4.98366 5.06316 5.12592 5.19241 5.24954 5.27508 5.34422 5.41796 5.57925 5.62686 5.70258 5.74149 5.77546 5.84043 5.92362 6.14209 6.20200 6.23442 6.30861 6.84766 7.59891 8.62073 Molecular weight = 311.16amu Principal moments of inertia in cm(-1) A = 0.023889 B = 0.002606 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.806937 B =10742.547124 C =10961.607185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.122 3.878 3 H 0.056 0.944 4 C -0.083 4.083 5 C -0.107 4.107 6 C -0.137 4.137 7 C -0.130 4.130 8 C -0.127 4.127 9 C -0.124 4.124 10 N -0.539 5.539 11 C 0.026 3.974 12 C 0.109 3.891 13 C -0.141 4.141 14 C -0.053 4.053 15 C -0.238 4.238 16 C 0.120 3.880 17 O -0.246 6.246 18 C -0.398 4.398 19 H 0.080 0.920 20 C 0.009 3.991 21 N -0.925 5.925 22 Si 0.971 3.029 23 H -0.266 1.266 24 H -0.267 1.267 25 H -0.262 1.262 26 C -0.192 4.192 27 C -0.060 4.060 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.033 0.967 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.094 0.906 41 H 0.131 0.869 42 H 0.105 0.895 43 H 0.284 0.716 44 H 0.126 0.874 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 14.383 24.078 28.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.015 3.985 3 H 0.074 0.926 4 C -0.084 4.084 5 C -0.125 4.125 6 C -0.155 4.155 7 C -0.148 4.148 8 C -0.145 4.145 9 C -0.142 4.142 10 N -0.263 5.263 11 C -0.122 4.122 12 C -0.017 4.017 13 C -0.142 4.142 14 C -0.072 4.072 15 C -0.257 4.257 16 C 0.071 3.929 17 O -0.154 6.154 18 C -0.474 4.474 19 H 0.098 0.902 20 C -0.189 4.189 21 N -0.565 5.565 22 Si 0.794 3.206 23 H -0.191 1.191 24 H -0.192 1.192 25 H -0.187 1.187 26 C -0.212 4.212 27 C -0.079 4.079 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.133 0.867 32 H 0.145 0.855 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.112 0.888 41 H 0.149 0.851 42 H 0.123 0.877 43 H 0.094 0.906 44 H 0.144 0.856 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.675 13.756 23.801 27.735 hybrid contribution 0.393 -0.081 -0.861 0.950 sum 4.068 13.675 22.940 27.015 Atomic orbital electron populations 1.21890 0.92853 1.02500 1.02588 1.20567 0.96110 0.94831 0.87009 0.92571 1.19840 0.99375 0.93863 0.95304 1.21099 0.98983 0.94515 0.97941 1.21408 0.99602 1.00623 0.93843 1.21426 0.99874 0.94647 0.98806 1.21388 0.99726 0.94744 0.98603 1.21242 0.99275 1.00490 0.93200 1.61983 1.10741 1.52421 1.01166 1.22382 0.87214 1.00247 1.02367 1.20930 1.01565 0.93364 0.85852 1.19591 0.95077 1.00547 0.99012 1.20851 0.99379 0.93357 0.93598 1.21263 0.98470 1.05160 1.00791 1.19667 0.94581 0.90989 0.87675 1.83507 1.39778 1.49808 1.42323 1.20706 0.95968 1.20803 1.09957 0.90242 1.25289 1.02106 0.94786 0.96755 1.69734 1.34366 1.27680 1.24770 0.85207 0.78281 0.79582 0.77578 1.19123 1.19211 1.18675 1.20469 1.00067 0.98936 1.01685 1.20906 0.96422 0.97494 0.93059 0.91069 0.91277 0.92753 0.86665 0.85533 0.84517 0.84092 0.84748 0.94873 0.91723 0.92102 0.92972 0.88828 0.85140 0.87695 0.90598 0.85597 0.83569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.96 71.98 0.65 -1.63 16 2 C 0.12 2.16 2.28 44.17 0.10 2.26 16 3 H 0.06 0.89 8.00 -2.39 -0.02 0.87 16 4 C -0.08 -1.55 3.70 -19.87 -0.07 -1.62 16 5 C -0.11 -2.24 8.13 22.27 0.18 -2.06 16 6 C -0.14 -2.54 10.05 22.27 0.22 -2.31 16 7 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 8 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 9 C -0.12 -1.94 9.67 22.27 0.22 -1.72 16 10 N -0.54 -11.58 3.97 -906.02 -3.60 -15.18 16 11 C 0.03 0.56 8.73 127.69 1.11 1.68 16 12 C 0.11 2.39 4.93 85.56 0.42 2.81 16 13 C -0.14 -4.17 4.89 -19.83 -0.10 -4.26 16 14 C -0.05 -1.87 9.69 22.25 0.22 -1.65 16 15 C -0.24 -10.61 9.17 22.39 0.21 -10.41 16 16 C 0.12 5.68 6.65 22.58 0.15 5.83 16 17 O -0.25 -13.61 8.59 -22.72 -0.20 -13.80 16 18 C -0.40 -23.84 9.95 67.92 0.68 -23.17 16 19 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16 20 C 0.01 0.51 5.49 84.83 0.47 0.98 16 21 N -0.92 -55.97 13.96 21.61 0.30 -55.67 16 22 Si 0.97 46.04 28.62 68.60 1.96 48.00 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 25 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 26 C -0.19 -7.38 9.99 22.39 0.22 -7.15 16 27 C -0.06 -1.83 7.95 22.25 0.18 -1.65 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.02 6.20 -2.39 -0.01 1.00 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.12 2.76 7.73 -2.91 -0.02 2.74 16 32 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 35 H 0.13 1.57 8.04 -2.91 -0.02 1.55 16 36 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.06 1.43 6.03 -2.39 -0.01 1.42 16 38 H 0.06 1.52 6.16 -2.39 -0.01 1.51 16 39 H 0.05 0.99 8.06 -2.39 -0.02 0.97 16 40 H 0.09 1.85 5.77 -2.39 -0.01 1.84 16 41 H 0.13 3.97 8.06 -2.91 -0.02 3.94 16 42 H 0.11 5.20 5.64 -2.91 -0.02 5.18 16 43 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 44 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 45 H 0.15 3.39 8.03 -2.91 -0.02 3.37 16 Total: -1.00 -66.88 364.90 4.74 -62.14 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.98 Total: 22.00 kcal Atomic # 6 Polarization: -52.78 SS G_CDS: 5.29 Total: -47.49 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: -3.29 Total: -70.85 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.20 Total: -13.80 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.96 Total: 48.00 kcal Total: -66.88 4.74 -62.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264109463.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.931 kcal (2) G-P(sol) polarization free energy of solvation -66.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds