Wall clock time and date at job start Fri Apr 10 2020 22:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46991 * 2 1 4 4 N 1.46497 * 109.46961 * 180.02562 * 3 2 1 5 5 C 1.46770 * 124.34952 * 89.99874 * 4 3 2 6 6 C 1.54480 * 105.47236 * 163.00653 * 5 4 3 7 7 H 1.09002 * 110.96791 * 143.53628 * 6 5 4 8 8 C 1.50705 * 110.96789 * 267.26267 * 6 5 4 9 9 O 1.20818 * 120.00168 * 356.91174 * 8 6 5 10 10 O 1.34230 * 119.99756 * 176.91513 * 8 6 5 11 11 C 1.45202 * 116.99779 * 179.97438 * 10 8 6 12 12 C 1.52998 * 109.46957 * 179.97438 * 11 10 8 13 13 C 1.53007 * 109.47088 * 299.99710 * 12 11 10 14 14 C 1.52997 * 109.47569 * 59.99768 * 12 11 10 15 15 C 1.52999 * 109.47203 * 179.97438 * 12 11 10 16 16 C 1.50699 * 109.47012 * 179.97438 * 15 12 11 17 17 H 1.07997 * 120.00266 * 359.97438 * 16 15 12 18 18 C 1.37885 * 119.99607 * 179.97438 * 16 15 12 19 19 N 1.31515 * 120.00197 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99836 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47262 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47113 * 120.00085 * 20 18 16 23 23 H 1.48500 * 109.47553 * 240.00294 * 20 18 16 24 24 C 1.54628 * 101.76599 * 25.41755 * 6 5 4 25 25 C 1.34424 * 124.35286 * 270.02678 * 4 3 2 26 26 O 1.21280 * 124.93697 * 0.38752 * 25 4 3 27 27 H 1.08997 * 109.47353 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46668 * 300.00012 * 1 2 3 29 29 H 1.08998 * 109.47348 * 59.99083 * 1 2 3 30 30 H 1.08996 * 109.46429 * 240.00078 * 2 1 3 31 31 H 1.08998 * 109.46956 * 120.00546 * 2 1 3 32 32 H 1.09000 * 109.47118 * 60.00066 * 3 2 1 33 33 H 1.09002 * 109.47250 * 300.00171 * 3 2 1 34 34 H 1.09005 * 110.24126 * 44.00714 * 5 4 3 35 35 H 1.08996 * 110.32088 * 282.04737 * 5 4 3 36 36 H 1.08995 * 109.46642 * 299.99584 * 11 10 8 37 37 H 1.09003 * 109.47150 * 59.99628 * 11 10 8 38 38 H 1.09003 * 109.47085 * 60.00016 * 13 12 11 39 39 H 1.08998 * 109.46941 * 180.02562 * 13 12 11 40 40 H 1.08993 * 109.47200 * 300.00333 * 13 12 11 41 41 H 1.09003 * 109.47023 * 59.99839 * 14 12 11 42 42 H 1.08998 * 109.47532 * 180.02562 * 14 12 11 43 43 H 1.09003 * 109.46883 * 300.00155 * 14 12 11 44 44 H 1.09003 * 109.46812 * 299.99808 * 15 12 11 45 45 H 1.09003 * 109.47025 * 59.99714 * 15 12 11 46 46 H 0.96991 * 120.00030 * 179.97438 * 19 18 16 47 47 H 1.08995 * 110.48559 * 93.88283 * 24 6 5 48 48 H 1.08999 * 110.48739 * 216.52271 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3326 1.4427 -1.2127 6 6 5.7408 1.8777 -0.7501 7 1 6.5148 1.3453 -1.3030 8 6 5.9156 3.3687 -0.8833 9 8 5.0314 4.0404 -1.3596 10 8 7.0535 3.9503 -0.4728 11 6 7.1525 5.3902 -0.6321 12 6 8.5094 5.8687 -0.1118 13 6 8.6433 5.5091 1.3694 14 6 9.6281 5.1897 -0.9045 15 6 8.6141 7.3858 -0.2802 16 6 9.9503 7.8572 0.2329 17 1 10.6543 7.1459 0.6390 18 6 10.2741 9.1966 0.1839 19 7 9.4166 10.0627 -0.3101 20 14 11.9301 9.7810 0.8206 21 1 12.7061 8.6183 1.3217 22 1 12.6795 10.4385 -0.2800 23 1 11.7214 10.7507 1.9257 24 6 5.7301 1.4516 0.7362 25 6 4.2640 1.4418 1.1088 26 8 3.8356 1.4344 2.2434 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9378 2.1533 -1.9389 35 1 4.3699 0.4431 -1.6457 36 1 7.0568 5.6463 -1.6872 37 1 6.3558 5.8739 -0.0670 38 1 8.5689 4.4282 1.4891 39 1 9.6097 5.8504 1.7402 40 1 7.8464 5.9928 1.9342 41 1 9.5327 5.4459 -1.9597 42 1 10.5947 5.5303 -0.5335 43 1 9.5537 4.1088 -0.7848 44 1 8.5189 7.6415 -1.3356 45 1 7.8171 7.8699 0.2843 46 1 9.6442 11.0049 -0.3442 47 1 6.1595 0.4563 0.8508 48 1 6.2735 2.1748 1.3444 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842348632.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:04 Heat of formation + Delta-G solvation = -165.971988 kcal Electronic energy + Delta-G solvation = -26452.619653 eV Core-core repulsion = 22698.961458 eV Total energy + Delta-G solvation = -3753.658195 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.20148 -40.90946 -38.82592 -37.56447 -36.87071 -35.84573 -34.41395 -32.58310 -29.37877 -28.83532 -28.13717 -27.94279 -27.20229 -25.39442 -24.29215 -22.72427 -21.50844 -20.50893 -19.92179 -18.95622 -18.37238 -18.00354 -17.73935 -17.31256 -16.58499 -16.51556 -16.32078 -15.58801 -15.34817 -15.19504 -14.88517 -14.68955 -14.56768 -14.20976 -14.09151 -13.85886 -13.76853 -13.57335 -13.13413 -13.00313 -12.96759 -12.71533 -12.70293 -12.65493 -12.54244 -12.31987 -12.25440 -12.21625 -11.94302 -11.84820 -11.67263 -11.54948 -11.36985 -11.02262 -10.94753 -10.88692 -10.54160 -9.79079 -8.16491 -6.24109 1.10702 1.41610 1.42350 1.44201 1.54583 1.60702 1.98208 2.43615 3.16733 3.18243 3.27056 3.55251 3.75498 3.92398 3.93421 3.96794 4.02672 4.22142 4.29353 4.33185 4.49521 4.53227 4.55951 4.59707 4.61295 4.67389 4.73830 4.79462 4.82516 4.90763 5.03207 5.09883 5.12207 5.15173 5.17599 5.31920 5.43150 5.45553 5.46935 5.51983 5.53618 5.55106 5.74865 5.87282 6.03955 6.27491 6.66623 6.90259 7.04411 7.43607 8.96350 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.030740 B = 0.002468 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.658726 B =11341.380276 C =11421.732664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.120 3.880 4 N -0.618 5.618 5 C 0.111 3.889 6 C -0.085 4.085 7 H 0.187 0.813 8 C 0.456 3.544 9 O -0.539 6.539 10 O -0.340 6.340 11 C 0.091 3.909 12 C -0.055 4.055 13 C -0.121 4.121 14 C -0.119 4.119 15 C 0.039 3.961 16 C -0.512 4.512 17 H 0.073 0.927 18 C -0.006 4.006 19 N -0.938 5.938 20 Si 0.961 3.039 21 H -0.257 1.257 22 H -0.282 1.282 23 H -0.285 1.285 24 C -0.137 4.137 25 C 0.500 3.500 26 O -0.581 6.581 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.133 0.867 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.032 0.968 41 H 0.040 0.960 42 H 0.054 0.946 43 H 0.072 0.928 44 H -0.009 1.009 45 H -0.015 1.015 46 H 0.260 0.740 47 H 0.161 0.839 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.232 -25.158 -4.095 27.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C -0.002 4.002 4 N -0.350 5.350 5 C -0.011 4.011 6 C -0.103 4.103 7 H 0.204 0.796 8 C 0.300 3.700 9 O -0.428 6.428 10 O -0.256 6.256 11 C 0.017 3.983 12 C -0.055 4.055 13 C -0.178 4.178 14 C -0.176 4.176 15 C 0.001 3.999 16 C -0.550 4.550 17 H 0.091 0.909 18 C -0.203 4.203 19 N -0.579 5.579 20 Si 0.786 3.214 21 H -0.180 1.180 22 H -0.208 1.208 23 H -0.211 1.211 24 C -0.177 4.177 25 C 0.289 3.711 26 O -0.462 6.462 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.150 0.850 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.009 0.991 45 H 0.004 0.996 46 H 0.069 0.931 47 H 0.179 0.821 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.799 -24.743 -3.697 27.249 hybrid contribution 0.257 1.643 0.306 1.691 sum -10.542 -23.100 -3.392 25.618 Atomic orbital electron populations 1.21696 0.94095 1.02672 1.02199 1.21813 0.97015 0.95514 1.02467 1.21571 0.77326 0.98267 1.03006 1.48464 1.06978 1.72058 1.07519 1.22374 0.87032 1.04799 0.86856 1.22206 1.02035 0.86749 0.99358 0.79576 1.24251 0.79328 0.92911 0.73491 1.90665 1.42895 1.66492 1.42793 1.86452 1.38978 1.24725 1.75428 1.23085 0.98589 0.76011 1.00602 1.20619 0.92109 0.95900 0.96846 1.21662 1.01425 1.00702 0.94010 1.21644 0.97758 0.99771 0.98413 1.19001 0.96088 0.89868 0.94903 1.21573 1.01518 0.92652 1.39290 0.90901 1.25966 1.00858 0.97479 0.95993 1.70118 1.37416 1.02674 1.47721 0.85453 0.79624 0.78540 0.77778 1.18035 1.20842 1.21103 1.22422 0.92977 1.07839 0.94461 1.21529 0.90861 0.74544 0.84196 1.90703 1.79688 1.52754 1.23059 0.91419 0.93366 0.91437 0.89879 0.93399 0.92516 0.88677 0.89186 0.84958 0.92106 0.93376 0.91119 0.92547 0.94903 0.94101 0.92718 0.90885 0.99057 0.99636 0.93100 0.82144 0.87844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.91 16 2 C -0.13 -1.70 6.26 30.60 0.19 -1.51 16 3 C 0.12 2.06 5.93 86.38 0.51 2.58 16 4 N -0.62 -11.45 2.93 -817.97 -2.40 -13.85 16 5 C 0.11 1.31 6.70 86.83 0.58 1.89 16 6 C -0.08 -1.09 3.65 -10.48 -0.04 -1.13 16 7 H 0.19 0.68 8.14 -2.39 -0.02 0.66 16 8 C 0.46 11.33 7.22 71.24 0.51 11.85 16 9 O -0.54 -17.21 15.26 21.99 0.34 -16.88 16 10 O -0.34 -9.62 8.77 -51.42 -0.45 -10.07 16 11 C 0.09 3.25 4.32 71.98 0.31 3.56 16 12 C -0.05 -2.14 0.61 -52.18 -0.03 -2.17 16 13 C -0.12 -4.40 8.08 71.98 0.58 -3.82 16 14 C -0.12 -4.11 8.08 71.98 0.58 -3.53 16 15 C 0.04 1.97 4.04 29.85 0.12 2.09 16 16 C -0.51 -27.63 7.65 25.60 0.20 -27.44 16 17 H 0.07 3.71 5.68 -2.91 -0.02 3.69 16 18 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 19 N -0.94 -56.93 13.29 21.45 0.28 -56.65 16 20 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 21 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 24 C -0.14 -2.06 6.40 30.59 0.20 -1.86 16 25 C 0.50 11.81 8.02 87.90 0.71 12.52 16 26 O -0.58 -19.40 17.60 -3.03 -0.05 -19.45 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 1.26 7.93 -2.39 -0.02 1.24 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.31 6.98 -2.38 -0.02 1.29 16 35 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.06 2.23 8.13 -2.39 -0.02 2.21 16 37 H 0.05 1.87 8.13 -2.39 -0.02 1.85 16 38 H 0.07 2.13 7.68 -2.39 -0.02 2.11 16 39 H 0.06 2.16 6.62 -2.39 -0.02 2.14 16 40 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 42 H 0.05 2.02 6.62 -2.39 -0.02 2.00 16 43 H 0.07 2.04 7.68 -2.39 -0.02 2.03 16 44 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 45 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 46 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 47 H 0.16 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.10 1.90 7.81 -2.39 -0.02 1.88 16 Total: -1.00 -76.81 388.47 6.26 -70.55 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.92 Total: 8.38 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 5.60 Total: -7.75 kcal Atomic # 7 Polarization: -68.39 SS G_CDS: -2.11 Total: -70.50 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -0.17 Total: -46.40 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -76.81 6.26 -70.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842348632.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.424 kcal (2) G-P(sol) polarization free energy of solvation -76.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds