Wall clock time and date at job start Fri Apr 10 2020 22:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47278 * 2 1 4 4 C 1.50696 * 109.47375 * 120.00427 * 2 1 3 5 5 O 1.21280 * 120.00083 * 118.83532 * 4 2 1 6 6 N 1.34781 * 119.99909 * 298.55798 * 4 2 1 7 7 C 1.47423 * 125.64987 * 175.10712 * 6 4 2 8 8 C 1.55134 * 104.72245 * 155.81821 * 7 6 4 9 9 C 1.55155 * 101.48448 * 37.29541 * 8 7 6 10 10 O 1.42889 * 110.72086 * 82.69845 * 9 8 7 11 11 C 1.50707 * 110.87014 * 205.89962 * 9 8 7 12 12 H 1.08001 * 119.99665 * 24.73607 * 11 9 8 13 13 C 1.37869 * 120.00113 * 204.73534 * 11 9 8 14 14 N 1.31508 * 120.00372 * 169.94141 * 13 11 9 15 15 Si 1.86808 * 119.99894 * 349.93876 * 13 11 9 16 16 H 1.48504 * 109.47036 * 84.12991 * 15 13 11 17 17 H 1.48495 * 109.47078 * 204.13364 * 15 13 11 18 18 H 1.48496 * 109.46959 * 324.13424 * 15 13 11 19 19 C 1.47026 * 125.64618 * 355.41271 * 6 4 2 20 20 C 1.53003 * 109.46800 * 240.00227 * 2 1 3 21 21 C 1.53178 * 109.54100 * 179.82284 * 20 2 1 22 22 C 1.53110 * 109.15596 * 183.23996 * 21 20 2 23 23 O 1.42905 * 109.48548 * 57.47217 * 22 21 20 24 24 C 1.42903 * 114.09845 * 298.89183 * 23 22 21 25 25 C 1.53090 * 109.41686 * 61.15712 * 24 23 22 26 26 H 1.09008 * 109.46865 * 313.80316 * 1 2 3 27 27 H 1.08998 * 109.47775 * 73.80473 * 1 2 3 28 28 H 1.09001 * 109.47727 * 193.81240 * 1 2 3 29 29 H 1.09000 * 109.46871 * 166.78001 * 3 2 1 30 30 H 1.08998 * 109.47166 * 286.77546 * 3 2 1 31 31 H 1.09002 * 109.47044 * 46.78066 * 3 2 1 32 32 H 1.08997 * 110.36649 * 274.74970 * 7 6 4 33 33 H 1.09005 * 110.36703 * 37.06767 * 7 6 4 34 34 H 1.09005 * 111.18912 * 279.19289 * 8 7 6 35 35 H 1.09001 * 110.93525 * 155.29307 * 8 7 6 36 36 H 0.96697 * 114.00393 * 70.56773 * 10 9 8 37 37 H 0.97001 * 120.00055 * 179.97438 * 14 13 11 38 38 H 1.08993 * 109.88300 * 300.44209 * 19 6 4 39 39 H 1.09001 * 109.87896 * 61.60941 * 19 6 4 40 40 H 1.09004 * 109.54160 * 299.99775 * 20 2 1 41 41 H 1.08996 * 109.52487 * 303.05153 * 21 20 2 42 42 H 1.09000 * 109.52308 * 63.25178 * 21 20 2 43 43 H 1.08997 * 109.40532 * 297.49558 * 22 21 20 44 44 H 1.08994 * 109.48328 * 177.50141 * 22 21 20 45 45 H 1.08997 * 109.48235 * 301.17255 * 24 23 22 46 46 H 1.09006 * 109.48701 * 181.14466 * 24 23 22 47 47 H 1.09002 * 109.52062 * 182.48713 * 25 24 23 48 48 H 1.09000 * 109.57412 * 62.32770 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7121 -1.7087 1.1191 6 7 1.7309 -0.2334 2.4543 7 6 2.0677 -0.8802 3.7356 8 6 2.0908 0.2778 4.7677 9 6 0.9185 1.1619 4.2664 10 8 -0.3312 0.6667 4.7511 11 6 1.1158 2.5985 4.6768 12 1 2.1099 2.9724 4.8728 13 6 0.0274 3.4354 4.8020 14 7 0.1709 4.6238 5.3466 15 14 -1.6512 2.8813 4.1979 16 1 -2.3122 2.0679 5.2500 17 1 -2.4859 4.0716 3.8951 18 1 -1.4899 2.0641 2.9687 19 6 1.0062 1.0152 2.7327 20 6 2.0399 -0.7212 -1.2493 21 6 3.5716 -0.7183 -1.2532 22 6 4.0720 -1.3699 -2.5453 23 8 3.5399 -0.6676 -3.6704 24 6 2.1128 -0.6791 -3.7438 25 6 1.5338 0.0022 -2.5010 26 1 -0.3633 0.7114 0.7418 27 1 -0.3634 0.2866 -0.9868 28 1 -0.3634 -0.9979 0.2453 29 1 3.1043 1.4515 0.2350 30 1 1.8815 1.8839 -0.9839 31 1 1.4976 2.0196 0.7489 32 1 1.3067 -1.6136 4.0018 33 1 3.0476 -1.3538 3.6754 34 1 3.0347 0.8216 4.7286 35 1 1.8976 -0.0936 5.7741 36 1 -0.4626 0.7927 5.7007 37 1 -0.5949 5.2128 5.4343 38 1 1.5485 1.8608 2.3098 39 1 0.0039 0.9648 2.3072 40 1 1.6772 -1.7491 -1.2505 41 1 3.9341 0.3082 -1.2005 42 1 3.9392 -1.2801 -0.3945 43 1 3.7443 -2.4090 -2.5773 44 1 5.1608 -1.3308 -2.5741 45 1 1.7595 -1.7091 -3.7915 46 1 1.7902 -0.1424 -4.6360 47 1 0.4453 -0.0447 -2.5338 48 1 1.8529 1.0441 -2.4736 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014885.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:07 Heat of formation + Delta-G solvation = -128.842472 kcal Electronic energy + Delta-G solvation = -28530.262342 eV Core-core repulsion = 24778.214203 eV Total energy + Delta-G solvation = -3752.048139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.76527 -39.11252 -37.74049 -35.90702 -34.82427 -32.46400 -31.92789 -31.14133 -29.89242 -28.48458 -27.38894 -25.56238 -24.93690 -23.94931 -23.15978 -21.41090 -20.00516 -19.70189 -18.49221 -17.51442 -16.41983 -16.23144 -16.00279 -15.75559 -15.26999 -15.25689 -14.89318 -14.51223 -14.34833 -13.94228 -13.78886 -13.45386 -13.25481 -13.03443 -12.72450 -12.58032 -12.48397 -12.13169 -11.97758 -11.92495 -11.72075 -11.51643 -11.22749 -11.17302 -10.96950 -10.78383 -10.70962 -10.60569 -10.56147 -10.32399 -10.24573 -10.08151 -9.56544 -9.43160 -9.14956 -8.74230 -8.59747 -8.08476 -6.33167 -4.44084 2.95797 3.30126 3.36137 3.45005 3.52835 3.83669 4.32400 4.50530 4.62690 4.71807 4.88006 4.95527 5.01206 5.06398 5.14483 5.18789 5.20363 5.30392 5.40922 5.46177 5.62034 5.64433 5.67335 5.69678 5.71754 5.75494 5.80840 5.86783 5.90318 5.99644 6.00538 6.10303 6.10911 6.20788 6.29197 6.36239 6.44523 6.50574 6.56536 6.67161 6.76552 6.93955 7.15261 7.30994 7.99692 7.99939 8.52154 8.55632 8.72011 9.27620 10.75955 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.021116 B = 0.004288 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.660006 B = 6528.907634 C = 7088.811528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.070 4.070 3 C -0.159 4.159 4 C 0.536 3.464 5 O -0.556 6.556 6 N -0.608 5.608 7 C 0.108 3.892 8 C -0.146 4.146 9 C 0.218 3.782 10 O -0.566 6.566 11 C -0.557 4.557 12 H 0.082 0.918 13 C 0.075 3.925 14 N -0.881 5.881 15 Si 0.939 3.061 16 H -0.287 1.287 17 H -0.321 1.321 18 H -0.273 1.273 19 C 0.094 3.906 20 C -0.058 4.058 21 C -0.162 4.162 22 C 0.063 3.937 23 O -0.387 6.387 24 C 0.063 3.937 25 C -0.158 4.158 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.377 0.623 37 H 0.268 0.732 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.100 0.900 43 H 0.047 0.953 44 H 0.090 0.910 45 H 0.047 0.953 46 H 0.090 0.910 47 H 0.076 0.924 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.632 -8.910 -11.999 15.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.073 4.073 3 C -0.215 4.215 4 C 0.325 3.675 5 O -0.436 6.436 6 N -0.340 5.340 7 C -0.015 4.015 8 C -0.185 4.185 9 C 0.178 3.822 10 O -0.374 6.374 11 C -0.594 4.594 12 H 0.100 0.900 13 C -0.131 4.131 14 N -0.515 5.515 15 Si 0.773 3.227 16 H -0.215 1.215 17 H -0.251 1.251 18 H -0.199 1.199 19 C -0.027 4.027 20 C -0.077 4.077 21 C -0.199 4.199 22 C -0.013 4.013 23 O -0.306 6.306 24 C -0.014 4.014 25 C -0.195 4.195 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.225 0.775 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.065 0.935 44 H 0.108 0.892 45 H 0.065 0.935 46 H 0.109 0.891 47 H 0.094 0.906 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.990 -9.346 -12.816 15.986 hybrid contribution -1.072 -0.081 0.684 1.275 sum 0.918 -9.428 -12.132 15.392 Atomic orbital electron populations 1.22097 0.92823 1.02868 1.03177 1.20663 0.97006 0.96802 0.92818 1.22260 1.01932 0.93926 1.03422 1.20143 0.79619 0.84217 0.83489 1.90562 1.39629 1.27119 1.86277 1.48626 1.55953 1.24320 1.05066 1.22251 0.99981 0.96021 0.83220 1.23393 1.01345 0.96082 0.97646 1.20060 0.80227 0.93064 0.88888 1.86124 1.39163 1.83445 1.28679 1.21221 0.96211 0.92553 1.49448 0.89960 1.25144 1.00288 0.94602 0.93061 1.69961 1.32109 1.09066 1.40402 0.85936 0.81727 0.74932 0.80121 1.21473 1.25133 1.19859 1.23168 0.96309 0.84933 0.98327 1.20897 0.95700 0.99101 0.92018 1.22505 0.95488 1.02507 0.99385 1.22584 0.98584 0.94717 0.85435 1.87895 1.20280 1.76053 1.46411 1.22535 0.81273 0.99677 0.97893 1.22459 1.01081 1.01163 0.94831 0.90812 0.91243 0.92500 0.92067 0.91216 0.90339 0.92000 0.91509 0.90461 0.90640 0.77476 0.92213 0.89191 0.90982 0.90788 0.91367 0.88215 0.93457 0.89189 0.93490 0.89147 0.90585 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.15 37.15 0.30 -1.76 16 2 C -0.07 -1.00 0.30 -155.66 -0.05 -1.04 16 3 C -0.16 -2.18 7.07 37.16 0.26 -1.92 16 4 C 0.54 9.36 6.19 -10.99 -0.07 9.29 16 5 O -0.56 -10.70 13.96 5.56 0.08 -10.63 16 6 N -0.61 -11.03 3.31 -170.38 -0.56 -11.60 16 7 C 0.11 1.88 6.93 -2.41 -0.02 1.86 16 8 C -0.15 -2.64 6.26 -24.46 -0.15 -2.79 16 9 C 0.22 4.52 0.70 -89.93 -0.06 4.46 16 10 O -0.57 -11.54 9.14 -35.23 -0.32 -11.86 16 11 C -0.56 -13.80 8.63 -34.44 -0.30 -14.10 16 12 H 0.08 2.24 8.00 -52.49 -0.42 1.82 16 13 C 0.07 1.94 5.44 -17.83 -0.10 1.84 16 14 N -0.88 -24.67 13.96 55.43 0.77 -23.90 16 15 Si 0.94 21.58 24.62 -169.99 -4.19 17.40 16 16 H -0.29 -6.47 6.99 56.52 0.40 -6.07 16 17 H -0.32 -7.63 7.11 56.52 0.40 -7.22 16 18 H -0.27 -6.09 5.54 56.52 0.31 -5.78 16 19 C 0.09 1.83 4.05 -3.06 -0.01 1.82 16 20 C -0.06 -0.75 1.26 -90.44 -0.11 -0.86 16 21 C -0.16 -2.13 4.80 -26.58 -0.13 -2.25 16 22 C 0.06 0.74 6.84 37.21 0.25 1.00 16 23 O -0.39 -4.83 10.77 -35.23 -0.38 -5.21 16 24 C 0.06 0.64 6.84 37.20 0.25 0.90 16 25 C -0.16 -1.67 4.77 -26.59 -0.13 -1.80 16 26 H 0.07 1.11 5.07 -51.92 -0.26 0.84 16 27 H 0.07 0.77 5.89 -51.93 -0.31 0.46 16 28 H 0.06 0.78 8.06 -51.93 -0.42 0.37 16 29 H 0.06 0.87 7.05 -51.93 -0.37 0.50 16 30 H 0.07 0.82 5.78 -51.93 -0.30 0.52 16 31 H 0.08 1.18 4.77 -51.93 -0.25 0.93 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.13 7.99 -51.93 -0.41 0.71 16 34 H 0.08 1.43 8.00 -51.93 -0.42 1.01 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.38 6.93 8.44 45.56 0.38 7.32 16 37 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.09 1.76 5.32 -51.93 -0.28 1.49 16 39 H 0.07 1.43 4.01 -51.93 -0.21 1.22 16 40 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 41 H 0.07 0.91 6.59 -51.93 -0.34 0.56 16 42 H 0.10 1.53 5.67 -51.93 -0.29 1.23 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.08 0.71 6.34 -51.93 -0.33 0.38 16 48 H 0.08 0.85 6.02 -51.93 -0.31 0.54 16 LS Contribution 341.89 15.07 5.15 5.15 Total: -1.00 -29.14 341.89 -6.21 -35.36 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -6.72 Total: 10.67 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -0.05 Total: -5.37 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.21 Total: -35.50 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.62 Total: -27.70 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.19 Total: 17.40 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.14 -6.21 -35.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014885.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.487 kcal (2) G-P(sol) polarization free energy of solvation -29.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds