Wall clock time and date at job start Fri Apr 10 2020 22:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47278 * 2 1 4 4 C 1.50696 * 109.47375 * 120.00427 * 2 1 3 5 5 O 1.21280 * 120.00083 * 118.83532 * 4 2 1 6 6 N 1.34781 * 119.99909 * 298.55798 * 4 2 1 7 7 C 1.47423 * 125.64987 * 175.10712 * 6 4 2 8 8 C 1.55134 * 104.72245 * 155.81821 * 7 6 4 9 9 C 1.55155 * 101.48448 * 37.29541 * 8 7 6 10 10 O 1.42889 * 110.72086 * 82.69845 * 9 8 7 11 11 C 1.50707 * 110.87014 * 205.89962 * 9 8 7 12 12 H 1.08001 * 119.99665 * 24.73607 * 11 9 8 13 13 C 1.37869 * 120.00113 * 204.73534 * 11 9 8 14 14 N 1.31508 * 120.00372 * 169.94141 * 13 11 9 15 15 Si 1.86808 * 119.99894 * 349.93876 * 13 11 9 16 16 H 1.48504 * 109.47036 * 84.12991 * 15 13 11 17 17 H 1.48495 * 109.47078 * 204.13364 * 15 13 11 18 18 H 1.48496 * 109.46959 * 324.13424 * 15 13 11 19 19 C 1.47026 * 125.64618 * 355.41271 * 6 4 2 20 20 C 1.53003 * 109.46800 * 240.00227 * 2 1 3 21 21 C 1.53178 * 109.54100 * 179.82284 * 20 2 1 22 22 C 1.53110 * 109.15596 * 183.23996 * 21 20 2 23 23 O 1.42905 * 109.48548 * 57.47217 * 22 21 20 24 24 C 1.42903 * 114.09845 * 298.89183 * 23 22 21 25 25 C 1.53090 * 109.41686 * 61.15712 * 24 23 22 26 26 H 1.09008 * 109.46865 * 313.80316 * 1 2 3 27 27 H 1.08998 * 109.47775 * 73.80473 * 1 2 3 28 28 H 1.09001 * 109.47727 * 193.81240 * 1 2 3 29 29 H 1.09000 * 109.46871 * 166.78001 * 3 2 1 30 30 H 1.08998 * 109.47166 * 286.77546 * 3 2 1 31 31 H 1.09002 * 109.47044 * 46.78066 * 3 2 1 32 32 H 1.08997 * 110.36649 * 274.74970 * 7 6 4 33 33 H 1.09005 * 110.36703 * 37.06767 * 7 6 4 34 34 H 1.09005 * 111.18912 * 279.19289 * 8 7 6 35 35 H 1.09001 * 110.93525 * 155.29307 * 8 7 6 36 36 H 0.96697 * 114.00393 * 70.56773 * 10 9 8 37 37 H 0.97001 * 120.00055 * 179.97438 * 14 13 11 38 38 H 1.08993 * 109.88300 * 300.44209 * 19 6 4 39 39 H 1.09001 * 109.87896 * 61.60941 * 19 6 4 40 40 H 1.09004 * 109.54160 * 299.99775 * 20 2 1 41 41 H 1.08996 * 109.52487 * 303.05153 * 21 20 2 42 42 H 1.09000 * 109.52308 * 63.25178 * 21 20 2 43 43 H 1.08997 * 109.40532 * 297.49558 * 22 21 20 44 44 H 1.08994 * 109.48328 * 177.50141 * 22 21 20 45 45 H 1.08997 * 109.48235 * 301.17255 * 24 23 22 46 46 H 1.09006 * 109.48701 * 181.14466 * 24 23 22 47 47 H 1.09002 * 109.52062 * 182.48713 * 25 24 23 48 48 H 1.09000 * 109.57412 * 62.32770 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7121 -1.7087 1.1191 6 7 1.7309 -0.2334 2.4543 7 6 2.0677 -0.8802 3.7356 8 6 2.0908 0.2778 4.7677 9 6 0.9185 1.1619 4.2664 10 8 -0.3312 0.6667 4.7511 11 6 1.1158 2.5985 4.6768 12 1 2.1099 2.9724 4.8728 13 6 0.0274 3.4354 4.8020 14 7 0.1709 4.6238 5.3466 15 14 -1.6512 2.8813 4.1979 16 1 -2.3122 2.0679 5.2500 17 1 -2.4859 4.0716 3.8951 18 1 -1.4899 2.0641 2.9687 19 6 1.0062 1.0152 2.7327 20 6 2.0399 -0.7212 -1.2493 21 6 3.5716 -0.7183 -1.2532 22 6 4.0720 -1.3699 -2.5453 23 8 3.5399 -0.6676 -3.6704 24 6 2.1128 -0.6791 -3.7438 25 6 1.5338 0.0022 -2.5010 26 1 -0.3633 0.7114 0.7418 27 1 -0.3634 0.2866 -0.9868 28 1 -0.3634 -0.9979 0.2453 29 1 3.1043 1.4515 0.2350 30 1 1.8815 1.8839 -0.9839 31 1 1.4976 2.0196 0.7489 32 1 1.3067 -1.6136 4.0018 33 1 3.0476 -1.3538 3.6754 34 1 3.0347 0.8216 4.7286 35 1 1.8976 -0.0936 5.7741 36 1 -0.4626 0.7927 5.7007 37 1 -0.5949 5.2128 5.4343 38 1 1.5485 1.8608 2.3098 39 1 0.0039 0.9648 2.3072 40 1 1.6772 -1.7491 -1.2505 41 1 3.9341 0.3082 -1.2005 42 1 3.9392 -1.2801 -0.3945 43 1 3.7443 -2.4090 -2.5773 44 1 5.1608 -1.3308 -2.5741 45 1 1.7595 -1.7091 -3.7915 46 1 1.7902 -0.1424 -4.6360 47 1 0.4453 -0.0447 -2.5338 48 1 1.8529 1.0441 -2.4736 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014885.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:07 Heat of formation + Delta-G solvation = -149.580722 kcal Electronic energy + Delta-G solvation = -28531.161620 eV Core-core repulsion = 24778.214203 eV Total energy + Delta-G solvation = -3752.947417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.00714 -40.30740 -39.15366 -37.06553 -36.38499 -34.44237 -33.06299 -32.02955 -31.35349 -30.04625 -28.48188 -27.14403 -26.16655 -25.12355 -24.29273 -22.59508 -21.65463 -20.85757 -19.74358 -19.35904 -17.76760 -17.45682 -17.08540 -16.96459 -16.83262 -16.54844 -16.13925 -15.96382 -15.45754 -15.21402 -15.08448 -14.91777 -14.39726 -14.34929 -14.28111 -13.97532 -13.69726 -13.61155 -13.40991 -13.09935 -12.96991 -12.72244 -12.51671 -12.48105 -12.33059 -12.14669 -12.07250 -11.95609 -11.90613 -11.66498 -11.56614 -11.28137 -11.05909 -10.68324 -10.57035 -10.40248 -10.27934 -9.56145 -8.35754 -6.48596 1.48260 1.52087 1.58609 1.70597 2.03496 2.40366 2.95731 3.00044 3.33051 3.44747 3.54539 3.69447 3.86251 4.06197 4.07134 4.11354 4.11697 4.18108 4.24834 4.31342 4.37477 4.40860 4.56569 4.61430 4.66165 4.71044 4.73319 4.78474 4.80533 4.84964 4.86298 4.95167 5.00805 5.07760 5.11585 5.14694 5.19144 5.23137 5.27050 5.34792 5.40920 5.47896 5.52429 6.04373 6.29277 6.56363 6.59631 6.95331 7.13218 7.28397 8.77295 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.021116 B = 0.004288 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.660006 B = 6528.907634 C = 7088.811528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.067 4.067 3 C -0.155 4.155 4 C 0.531 3.469 5 O -0.575 6.575 6 N -0.612 5.612 7 C 0.110 3.890 8 C -0.138 4.138 9 C 0.214 3.786 10 O -0.565 6.565 11 C -0.551 4.551 12 H 0.046 0.954 13 C 0.032 3.968 14 N -0.929 5.929 15 Si 0.992 3.008 16 H -0.275 1.275 17 H -0.332 1.332 18 H -0.261 1.261 19 C 0.105 3.895 20 C -0.055 4.055 21 C -0.158 4.158 22 C 0.066 3.934 23 O -0.402 6.402 24 C 0.058 3.942 25 C -0.152 4.152 26 H 0.058 0.942 27 H 0.098 0.902 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.386 0.614 37 H 0.269 0.731 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.051 0.949 44 H 0.099 0.901 45 H 0.055 0.945 46 H 0.111 0.889 47 H 0.095 0.905 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.503 -10.204 -13.801 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.070 4.070 3 C -0.212 4.212 4 C 0.321 3.679 5 O -0.456 6.456 6 N -0.345 5.345 7 C -0.012 4.012 8 C -0.177 4.177 9 C 0.174 3.826 10 O -0.374 6.374 11 C -0.589 4.589 12 H 0.064 0.936 13 C -0.169 4.169 14 N -0.566 5.566 15 Si 0.825 3.175 16 H -0.202 1.202 17 H -0.264 1.264 18 H -0.186 1.186 19 C -0.017 4.017 20 C -0.074 4.074 21 C -0.196 4.196 22 C -0.010 4.010 23 O -0.321 6.321 24 C -0.018 4.018 25 C -0.190 4.190 26 H 0.077 0.923 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.236 0.764 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.069 0.931 44 H 0.117 0.883 45 H 0.073 0.927 46 H 0.129 0.871 47 H 0.113 0.887 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.871 -10.668 -14.614 18.115 hybrid contribution -0.617 0.303 1.279 1.452 sum 0.254 -10.365 -13.335 16.892 Atomic orbital electron populations 1.22088 0.91845 1.02281 1.04422 1.20719 0.97694 0.96693 0.91858 1.22227 1.01038 0.93571 1.04320 1.20793 0.79022 0.84064 0.84016 1.90558 1.40393 1.28102 1.86548 1.48686 1.56060 1.23996 1.05714 1.22260 1.00533 0.95708 0.82740 1.23299 0.99689 0.95726 0.98963 1.19965 0.81495 0.91151 0.89998 1.86095 1.38719 1.83001 1.29622 1.21375 0.94461 0.94719 1.48306 0.93572 1.25811 1.03528 0.94425 0.93122 1.70075 1.33109 1.10649 1.42788 0.85043 0.77862 0.74240 0.80388 1.20198 1.26404 1.18586 1.22882 0.96432 0.85418 0.97010 1.20879 0.95298 0.98790 0.92405 1.22415 0.95971 1.01926 0.99267 1.22564 0.99201 0.94657 0.84605 1.87883 1.21715 1.76162 1.46321 1.22735 0.80110 1.00520 0.98472 1.22444 1.02172 1.00735 0.93602 0.92271 0.88367 0.92849 0.93025 0.88883 0.91683 0.91219 0.91047 0.91370 0.88777 0.76443 0.92248 0.89797 0.90931 0.91596 0.91783 0.90664 0.93078 0.88299 0.92716 0.87055 0.88717 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 8.15 71.98 0.59 -3.08 16 2 C -0.07 -1.79 0.30 -52.93 -0.02 -1.81 16 3 C -0.15 -4.06 7.07 71.98 0.51 -3.55 16 4 C 0.53 18.02 6.19 87.66 0.54 18.56 16 5 O -0.58 -21.80 13.96 -3.03 -0.04 -21.84 16 6 N -0.61 -21.62 3.31 -811.34 -2.69 -24.31 16 7 C 0.11 3.68 6.93 86.93 0.60 4.28 16 8 C -0.14 -4.86 6.26 32.06 0.20 -4.66 16 9 C 0.21 8.69 0.70 -10.35 -0.01 8.69 16 10 O -0.56 -21.83 9.14 -148.98 -1.36 -23.20 16 11 C -0.55 -27.59 8.63 25.60 0.22 -27.37 16 12 H 0.05 2.61 8.00 -2.91 -0.02 2.58 16 13 C 0.03 1.68 5.44 84.65 0.46 2.14 16 14 N -0.93 -53.13 13.96 21.44 0.30 -52.83 16 15 Si 0.99 43.75 24.62 68.60 1.69 45.44 16 16 H -0.28 -11.53 6.99 99.48 0.70 -10.84 16 17 H -0.33 -15.26 7.11 99.48 0.71 -14.55 16 18 H -0.26 -10.89 5.54 99.48 0.55 -10.33 16 19 C 0.10 3.96 4.05 86.73 0.35 4.31 16 20 C -0.05 -1.30 1.26 -10.67 -0.01 -1.31 16 21 C -0.16 -4.01 4.80 30.69 0.15 -3.87 16 22 C 0.07 1.46 6.84 72.02 0.49 1.95 16 23 O -0.40 -9.10 10.77 -148.98 -1.60 -10.70 16 24 C 0.06 1.00 6.84 72.01 0.49 1.49 16 25 C -0.15 -2.73 4.77 30.68 0.15 -2.59 16 26 H 0.06 1.64 5.07 -2.38 -0.01 1.63 16 27 H 0.10 1.82 5.89 -2.39 -0.01 1.80 16 28 H 0.05 1.35 8.06 -2.39 -0.02 1.33 16 29 H 0.05 1.44 7.05 -2.39 -0.02 1.42 16 30 H 0.09 1.98 5.78 -2.39 -0.01 1.97 16 31 H 0.06 1.89 4.77 -2.39 -0.01 1.88 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 33 H 0.07 2.33 7.99 -2.38 -0.02 2.31 16 34 H 0.07 2.51 8.00 -2.38 -0.02 2.49 16 35 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.39 13.36 8.44 -74.06 -0.62 12.73 16 37 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 38 H 0.08 3.27 5.32 -2.39 -0.01 3.26 16 39 H 0.07 2.76 4.01 -2.39 -0.01 2.75 16 40 H 0.07 1.69 8.09 -2.39 -0.02 1.67 16 41 H 0.06 1.65 6.59 -2.39 -0.02 1.63 16 42 H 0.07 2.30 5.67 -2.39 -0.01 2.28 16 43 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 47 H 0.09 1.36 6.34 -2.39 -0.02 1.35 16 48 H 0.08 1.44 6.02 -2.39 -0.01 1.43 16 Total: -1.00 -62.46 341.89 1.20 -61.26 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: 0.19 Total: 33.00 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 4.72 Total: -6.82 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -2.39 Total: -77.14 kcal Atomic # 8 Polarization: -52.73 SS G_CDS: -3.01 Total: -55.74 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.69 Total: 45.44 kcal Total: -62.46 1.20 -61.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014885.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.318 kcal (2) G-P(sol) polarization free energy of solvation -62.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds