Wall clock time and date at job start Fri Apr 10 2020 22:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47137 * 2 1 4 4 C 1.50697 * 109.46860 * 240.00049 * 2 1 3 5 5 O 1.21286 * 120.00587 * 358.32884 * 4 2 1 6 6 N 1.34783 * 119.99795 * 178.33110 * 4 2 1 7 7 C 1.47019 * 125.64652 * 3.26935 * 6 4 2 8 8 C 1.54338 * 107.26598 * 178.84560 * 7 6 4 9 9 C 1.55156 * 103.01934 * 338.14049 * 8 7 6 10 10 O 1.42897 * 111.03940 * 277.21403 * 9 8 7 11 11 C 1.50705 * 111.00499 * 153.37624 * 9 8 7 12 12 H 1.07999 * 120.00462 * 247.80404 * 11 9 8 13 13 C 1.37881 * 119.99665 * 67.80569 * 11 9 8 14 14 N 1.31517 * 120.00122 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 119.99876 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47386 * 59.99474 * 15 13 11 17 17 H 1.48498 * 109.47272 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46948 * 299.99577 * 15 13 11 19 19 C 1.47430 * 125.64677 * 183.57046 * 6 4 2 20 20 C 1.52998 * 109.47232 * 119.99850 * 2 1 3 21 21 C 1.53183 * 109.54349 * 65.38856 * 20 2 1 22 22 C 1.53100 * 109.15711 * 183.24026 * 21 20 2 23 23 O 1.42900 * 109.48659 * 57.47629 * 22 21 20 24 24 C 1.42907 * 114.09773 * 298.88647 * 23 22 21 25 25 C 1.53096 * 109.41363 * 61.15940 * 24 23 22 26 26 H 1.09001 * 109.47064 * 294.23415 * 1 2 3 27 27 H 1.08997 * 109.47314 * 54.23384 * 1 2 3 28 28 H 1.09004 * 109.47292 * 174.23546 * 1 2 3 29 29 H 1.08992 * 109.47277 * 168.92354 * 3 2 1 30 30 H 1.09003 * 109.46986 * 288.92536 * 3 2 1 31 31 H 1.09003 * 109.47103 * 48.91942 * 3 2 1 32 32 H 1.09003 * 109.88095 * 298.38889 * 7 6 4 33 33 H 1.09005 * 109.88495 * 59.55895 * 7 6 4 34 34 H 1.08997 * 110.85419 * 219.67218 * 8 7 6 35 35 H 1.09004 * 110.66192 * 96.51850 * 8 7 6 36 36 H 0.96700 * 114.00103 * 292.21726 * 10 9 8 37 37 H 0.96993 * 120.00008 * 180.02562 * 14 13 11 38 38 H 1.08992 * 110.36708 * 322.93462 * 19 6 4 39 39 H 1.08995 * 110.36054 * 85.14978 * 19 6 4 40 40 H 1.08997 * 109.54391 * 185.56246 * 20 2 1 41 41 H 1.09003 * 109.52216 * 303.05780 * 21 20 2 42 42 H 1.09004 * 109.52200 * 63.24597 * 21 20 2 43 43 H 1.09000 * 109.40632 * 297.49146 * 22 21 20 44 44 H 1.09001 * 109.49136 * 177.50575 * 22 21 20 45 45 H 1.08999 * 109.48094 * 301.17638 * 24 23 22 46 46 H 1.09000 * 109.48357 * 181.14224 * 24 23 22 47 47 H 1.08996 * 109.52074 * 182.48704 * 25 24 23 48 48 H 1.09002 * 109.57098 * 62.33161 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.2446 -1.1978 -2.0134 6 7 3.3569 -0.8042 -1.4609 7 6 4.4186 -0.3211 -0.5659 8 6 5.7689 -0.6704 -1.2268 9 6 5.3970 -1.8270 -2.1917 10 8 5.3567 -3.0778 -1.5018 11 6 6.3512 -1.8865 -3.3567 12 1 6.0048 -1.6475 -4.3513 13 6 7.6666 -2.2462 -3.1528 14 7 8.0886 -2.5368 -1.9415 15 14 8.8495 -2.3193 -4.5966 16 1 8.9381 -0.9802 -5.2323 17 1 10.1935 -2.7281 -4.1152 18 1 8.3574 -3.3073 -5.5901 19 6 3.9811 -1.4026 -2.6550 20 6 2.0400 -0.7212 1.2492 21 6 1.6440 -2.1996 1.1850 22 6 2.0873 -2.8949 2.4749 23 8 1.4958 -2.2384 3.5979 24 6 1.8698 -0.8660 3.7351 25 6 1.4158 -0.0886 2.4968 26 1 -0.3633 0.4218 0.9371 27 1 -0.3634 0.6006 -0.8338 28 1 -0.3634 -1.0225 -0.1032 29 1 3.1119 1.4489 0.1974 30 1 1.8469 1.8961 -0.9721 31 1 1.5244 2.0102 0.7747 32 1 4.3339 0.7582 -0.4391 33 1 4.3422 -0.8174 0.4016 34 1 6.4901 -1.0065 -0.4818 35 1 6.1584 0.1838 -1.7807 36 1 6.2201 -3.3845 -1.1928 37 1 9.0140 -2.7895 -1.7980 38 1 3.4130 -2.2725 -2.9844 39 1 4.0470 -0.6675 -3.4571 40 1 3.1254 -0.6365 1.3016 41 1 0.5622 -2.2827 1.0811 42 1 2.1302 -2.6701 0.3303 43 1 3.1732 -2.8480 2.5569 44 1 1.7691 -3.9372 2.4541 45 1 2.9529 -0.7925 3.8336 46 1 1.3947 -0.4466 4.6220 47 1 1.7389 0.9491 2.5795 48 1 0.3292 -0.1268 2.4198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014887.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:09 Heat of formation + Delta-G solvation = -136.060334 kcal Electronic energy + Delta-G solvation = -28704.105596 eV Core-core repulsion = 24951.744468 eV Total energy + Delta-G solvation = -3752.361129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.73637 -38.87758 -37.41020 -35.86183 -34.32146 -32.17710 -31.58976 -31.11371 -29.80241 -28.54635 -27.13368 -25.68409 -24.87640 -23.74811 -22.91118 -21.48976 -19.79004 -19.53061 -18.48241 -17.22867 -16.76297 -16.07075 -15.69725 -15.38837 -15.03079 -14.99224 -14.83046 -14.67594 -14.24759 -13.83378 -13.52920 -13.45466 -13.17478 -12.72204 -12.52271 -12.23045 -12.14774 -11.97524 -11.79538 -11.72064 -11.58007 -11.50004 -11.35129 -11.21285 -10.97633 -10.94956 -10.67587 -10.55613 -10.48860 -10.38097 -10.12286 -9.96927 -9.51263 -9.45884 -9.12976 -8.70994 -8.24594 -7.95148 -6.33961 -4.41646 3.08539 3.18398 3.23631 3.26674 3.55789 3.87757 4.22785 4.50616 4.58203 4.71506 4.91735 4.97802 5.00266 5.15616 5.21022 5.22758 5.29349 5.48508 5.48946 5.55229 5.61235 5.62823 5.68465 5.75196 5.77376 5.84181 5.87633 5.92886 5.94856 5.99928 6.10029 6.22649 6.23481 6.25095 6.32383 6.41810 6.52338 6.64398 6.84461 6.95930 7.18784 7.25626 7.28271 7.69454 7.95537 8.15747 8.59522 8.67843 9.27474 9.43699 10.73664 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.019748 B = 0.004263 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.493414 B = 6567.309868 C = 7169.711644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 C -0.150 4.150 4 C 0.534 3.466 5 O -0.554 6.554 6 N -0.603 5.603 7 C 0.090 3.910 8 C -0.141 4.141 9 C 0.251 3.749 10 O -0.584 6.584 11 C -0.536 4.536 12 H 0.064 0.936 13 C 0.073 3.927 14 N -0.898 5.898 15 Si 0.903 3.097 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.118 3.882 20 C -0.086 4.086 21 C -0.154 4.154 22 C 0.063 3.937 23 O -0.386 6.386 24 C 0.061 3.939 25 C -0.152 4.152 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.385 0.615 37 H 0.270 0.730 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.093 0.907 45 H 0.049 0.951 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.578 6.783 10.272 15.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.074 4.074 3 C -0.207 4.207 4 C 0.323 3.677 5 O -0.433 6.433 6 N -0.335 5.335 7 C -0.032 4.032 8 C -0.179 4.179 9 C 0.211 3.789 10 O -0.394 6.394 11 C -0.575 4.575 12 H 0.083 0.917 13 C -0.129 4.129 14 N -0.538 5.538 15 Si 0.731 3.269 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.004 4.004 20 C -0.104 4.104 21 C -0.191 4.191 22 C -0.013 4.013 23 O -0.305 6.305 24 C -0.016 4.016 25 C -0.189 4.189 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.237 0.763 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.111 0.889 45 H 0.068 0.932 46 H 0.108 0.892 47 H 0.093 0.907 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.663 6.431 9.963 15.297 hybrid contribution 1.658 0.154 -0.890 1.888 sum -8.004 6.586 9.073 13.775 Atomic orbital electron populations 1.21764 0.92400 1.03026 1.01416 1.20719 0.97501 0.95998 0.93204 1.22075 1.02260 0.93963 1.02400 1.20039 0.80959 0.79848 0.86899 1.90648 1.54756 1.48959 1.48953 1.48528 1.04525 1.58280 1.22128 1.22553 0.89207 0.97595 0.93833 1.23225 0.93326 1.01025 1.00361 1.19535 0.88927 0.81322 0.89161 1.86096 1.37079 1.38963 1.77251 1.21460 0.94226 1.47456 0.94342 0.91749 1.24976 0.98045 0.93659 0.96213 1.69547 1.17598 1.46295 1.20363 0.86464 0.79515 0.78751 0.82205 1.20046 1.21080 1.19965 1.22373 0.94468 0.97031 0.86486 1.21429 1.01350 0.94726 0.92922 1.22299 1.02606 0.95340 0.98896 1.22567 0.97310 0.96469 0.84977 1.87900 1.71490 1.23505 1.47567 1.22559 0.99282 0.82175 0.97602 1.22368 1.02056 0.99821 0.94689 0.91913 0.92391 0.91669 0.90991 0.92285 0.91669 0.92210 0.91911 0.89963 0.91462 0.76300 0.92007 0.91189 0.91321 0.89386 0.90815 0.90258 0.92930 0.88896 0.93234 0.89155 0.90703 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 7.13 37.16 0.27 -1.39 16 2 C -0.07 -0.98 0.31 -155.66 -0.05 -1.02 16 3 C -0.15 -1.74 7.61 37.16 0.28 -1.46 16 4 C 0.53 9.83 5.11 -10.98 -0.06 9.77 16 5 O -0.55 -12.10 16.13 5.55 0.09 -12.01 16 6 N -0.60 -11.50 3.31 -170.51 -0.56 -12.06 16 7 C 0.09 1.55 5.29 -3.06 -0.02 1.53 16 8 C -0.14 -2.89 5.64 -24.89 -0.14 -3.03 16 9 C 0.25 5.90 0.89 -89.62 -0.08 5.82 16 10 O -0.58 -14.57 13.18 -35.23 -0.46 -15.03 16 11 C -0.54 -13.68 8.25 -34.44 -0.28 -13.96 16 12 H 0.06 1.64 7.77 -52.49 -0.41 1.23 16 13 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 14 N -0.90 -22.60 10.79 55.43 0.60 -22.00 16 15 Si 0.90 19.84 29.54 -169.99 -5.02 14.82 16 16 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 C 0.12 2.60 6.10 -2.52 -0.02 2.59 16 20 C -0.09 -1.08 1.35 -90.44 -0.12 -1.21 16 21 C -0.15 -2.16 4.85 -26.58 -0.13 -2.29 16 22 C 0.06 0.81 6.84 37.21 0.25 1.07 16 23 O -0.39 -4.98 10.77 -35.23 -0.38 -5.36 16 24 C 0.06 0.62 6.84 37.21 0.25 0.88 16 25 C -0.15 -1.53 4.73 -26.59 -0.13 -1.65 16 26 H 0.06 0.65 5.94 -51.93 -0.31 0.34 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.93 6.56 -51.93 -0.34 0.59 16 29 H 0.07 0.82 4.85 -51.93 -0.25 0.57 16 30 H 0.06 0.73 8.10 -51.93 -0.42 0.30 16 31 H 0.06 0.60 7.20 -51.93 -0.37 0.23 16 32 H 0.06 0.88 5.45 -51.93 -0.28 0.60 16 33 H 0.06 1.03 5.51 -51.93 -0.29 0.74 16 34 H 0.08 1.77 7.84 -51.93 -0.41 1.37 16 35 H 0.07 1.39 8.03 -51.93 -0.42 0.97 16 36 H 0.38 9.74 6.93 45.56 0.32 10.05 16 37 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 38 H 0.07 1.66 8.00 -51.93 -0.42 1.25 16 39 H 0.07 1.47 8.02 -51.93 -0.42 1.06 16 40 H 0.09 1.17 4.65 -51.93 -0.24 0.93 16 41 H 0.07 1.04 6.58 -51.93 -0.34 0.70 16 42 H 0.08 1.35 7.21 -51.93 -0.37 0.98 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.07 0.63 7.03 -51.93 -0.36 0.27 16 48 H 0.08 0.78 6.04 -51.93 -0.31 0.47 16 LS Contribution 352.00 15.07 5.30 5.30 Total: -1.00 -28.15 352.00 -7.39 -35.54 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -6.90 Total: 13.42 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -0.05 Total: -2.62 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.03 Total: -34.07 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.75 Total: -32.40 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.15 -7.39 -35.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014887.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.523 kcal (2) G-P(sol) polarization free energy of solvation -28.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds