Wall clock time and date at job start Fri Apr 10 2020 22:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47137 * 2 1 4 4 C 1.50697 * 109.46860 * 240.00049 * 2 1 3 5 5 O 1.21286 * 120.00587 * 358.32884 * 4 2 1 6 6 N 1.34783 * 119.99795 * 178.33110 * 4 2 1 7 7 C 1.47019 * 125.64652 * 3.26935 * 6 4 2 8 8 C 1.54338 * 107.26598 * 178.84560 * 7 6 4 9 9 C 1.55156 * 103.01934 * 338.14049 * 8 7 6 10 10 O 1.42897 * 111.03940 * 277.21403 * 9 8 7 11 11 C 1.50705 * 111.00499 * 153.37624 * 9 8 7 12 12 H 1.07999 * 120.00462 * 247.80404 * 11 9 8 13 13 C 1.37881 * 119.99665 * 67.80569 * 11 9 8 14 14 N 1.31517 * 120.00122 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 119.99876 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47386 * 59.99474 * 15 13 11 17 17 H 1.48498 * 109.47272 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46948 * 299.99577 * 15 13 11 19 19 C 1.47430 * 125.64677 * 183.57046 * 6 4 2 20 20 C 1.52998 * 109.47232 * 119.99850 * 2 1 3 21 21 C 1.53183 * 109.54349 * 65.38856 * 20 2 1 22 22 C 1.53100 * 109.15711 * 183.24026 * 21 20 2 23 23 O 1.42900 * 109.48659 * 57.47629 * 22 21 20 24 24 C 1.42907 * 114.09773 * 298.88647 * 23 22 21 25 25 C 1.53096 * 109.41363 * 61.15940 * 24 23 22 26 26 H 1.09001 * 109.47064 * 294.23415 * 1 2 3 27 27 H 1.08997 * 109.47314 * 54.23384 * 1 2 3 28 28 H 1.09004 * 109.47292 * 174.23546 * 1 2 3 29 29 H 1.08992 * 109.47277 * 168.92354 * 3 2 1 30 30 H 1.09003 * 109.46986 * 288.92536 * 3 2 1 31 31 H 1.09003 * 109.47103 * 48.91942 * 3 2 1 32 32 H 1.09003 * 109.88095 * 298.38889 * 7 6 4 33 33 H 1.09005 * 109.88495 * 59.55895 * 7 6 4 34 34 H 1.08997 * 110.85419 * 219.67218 * 8 7 6 35 35 H 1.09004 * 110.66192 * 96.51850 * 8 7 6 36 36 H 0.96700 * 114.00103 * 292.21726 * 10 9 8 37 37 H 0.96993 * 120.00008 * 180.02562 * 14 13 11 38 38 H 1.08992 * 110.36708 * 322.93462 * 19 6 4 39 39 H 1.08995 * 110.36054 * 85.14978 * 19 6 4 40 40 H 1.08997 * 109.54391 * 185.56246 * 20 2 1 41 41 H 1.09003 * 109.52216 * 303.05780 * 21 20 2 42 42 H 1.09004 * 109.52200 * 63.24597 * 21 20 2 43 43 H 1.09000 * 109.40632 * 297.49146 * 22 21 20 44 44 H 1.09001 * 109.49136 * 177.50575 * 22 21 20 45 45 H 1.08999 * 109.48094 * 301.17638 * 24 23 22 46 46 H 1.09000 * 109.48357 * 181.14224 * 24 23 22 47 47 H 1.08996 * 109.52074 * 182.48704 * 25 24 23 48 48 H 1.09002 * 109.57098 * 62.33161 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.2446 -1.1978 -2.0134 6 7 3.3569 -0.8042 -1.4609 7 6 4.4186 -0.3211 -0.5659 8 6 5.7689 -0.6704 -1.2268 9 6 5.3970 -1.8270 -2.1917 10 8 5.3567 -3.0778 -1.5018 11 6 6.3512 -1.8865 -3.3567 12 1 6.0048 -1.6475 -4.3513 13 6 7.6666 -2.2462 -3.1528 14 7 8.0886 -2.5368 -1.9415 15 14 8.8495 -2.3193 -4.5966 16 1 8.9381 -0.9802 -5.2323 17 1 10.1935 -2.7281 -4.1152 18 1 8.3574 -3.3073 -5.5901 19 6 3.9811 -1.4026 -2.6550 20 6 2.0400 -0.7212 1.2492 21 6 1.6440 -2.1996 1.1850 22 6 2.0873 -2.8949 2.4749 23 8 1.4958 -2.2384 3.5979 24 6 1.8698 -0.8660 3.7351 25 6 1.4158 -0.0886 2.4968 26 1 -0.3633 0.4218 0.9371 27 1 -0.3634 0.6006 -0.8338 28 1 -0.3634 -1.0225 -0.1032 29 1 3.1119 1.4489 0.1974 30 1 1.8469 1.8961 -0.9721 31 1 1.5244 2.0102 0.7747 32 1 4.3339 0.7582 -0.4391 33 1 4.3422 -0.8174 0.4016 34 1 6.4901 -1.0065 -0.4818 35 1 6.1584 0.1838 -1.7807 36 1 6.2201 -3.3845 -1.1928 37 1 9.0140 -2.7895 -1.7980 38 1 3.4130 -2.2725 -2.9844 39 1 4.0470 -0.6675 -3.4571 40 1 3.1254 -0.6365 1.3016 41 1 0.5622 -2.2827 1.0811 42 1 2.1302 -2.6701 0.3303 43 1 3.1732 -2.8480 2.5569 44 1 1.7691 -3.9372 2.4541 45 1 2.9529 -0.7925 3.8336 46 1 1.3947 -0.4466 4.6220 47 1 1.7389 0.9491 2.5795 48 1 0.3292 -0.1268 2.4198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014887.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:09 Heat of formation + Delta-G solvation = -155.441172 kcal Electronic energy + Delta-G solvation = -28704.946012 eV Core-core repulsion = 24951.744468 eV Total energy + Delta-G solvation = -3753.201545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.00273 -40.10072 -39.02341 -37.06995 -36.08477 -34.14567 -32.64165 -32.04672 -31.43478 -30.17107 -28.23714 -27.24814 -26.07814 -24.90924 -24.20597 -22.73686 -21.50971 -20.74608 -19.88140 -19.11308 -17.95808 -17.08598 -17.03175 -16.94135 -16.65804 -16.35703 -16.11264 -15.90179 -15.62060 -15.15828 -14.83742 -14.70144 -14.55112 -14.03361 -13.87078 -13.71792 -13.46141 -13.24443 -13.22192 -13.13135 -12.93686 -12.84850 -12.74206 -12.66759 -12.39421 -12.29258 -12.21604 -11.93155 -11.78671 -11.60660 -11.48334 -11.30591 -11.02685 -10.71205 -10.55986 -10.40143 -10.13968 -9.52197 -8.26403 -6.40886 1.42267 1.44525 1.51214 1.64523 2.07421 2.39206 2.98404 2.98628 3.37504 3.52622 3.69367 3.78569 3.94563 4.02323 4.07447 4.13166 4.17584 4.20135 4.29539 4.36491 4.42407 4.54084 4.59271 4.63279 4.71331 4.74973 4.78597 4.82184 4.86384 4.89788 4.90872 4.98985 5.06978 5.09561 5.16992 5.20047 5.24027 5.30755 5.38293 5.43455 5.50681 5.52332 5.76074 6.04983 6.28288 6.60882 6.67381 7.17990 7.30595 7.44853 8.79680 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.019748 B = 0.004263 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.493414 B = 6567.309868 C = 7169.711644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.064 4.064 3 C -0.147 4.147 4 C 0.527 3.473 5 O -0.597 6.597 6 N -0.605 5.605 7 C 0.099 3.901 8 C -0.131 4.131 9 C 0.238 3.762 10 O -0.595 6.595 11 C -0.564 4.564 12 H 0.054 0.946 13 C 0.039 3.961 14 N -0.909 5.909 15 Si 0.959 3.041 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.280 1.280 19 C 0.122 3.878 20 C -0.082 4.082 21 C -0.150 4.150 22 C 0.068 3.932 23 O -0.398 6.398 24 C 0.052 3.948 25 C -0.144 4.144 26 H 0.097 0.903 27 H 0.051 0.949 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.381 0.619 37 H 0.273 0.727 38 H 0.039 0.961 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.039 0.961 43 H 0.050 0.950 44 H 0.094 0.906 45 H 0.055 0.945 46 H 0.116 0.884 47 H 0.104 0.896 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.638 9.100 12.330 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.067 4.067 3 C -0.204 4.204 4 C 0.318 3.682 5 O -0.479 6.479 6 N -0.336 5.336 7 C -0.023 4.023 8 C -0.170 4.170 9 C 0.198 3.802 10 O -0.405 6.405 11 C -0.603 4.603 12 H 0.073 0.927 13 C -0.162 4.162 14 N -0.548 5.548 15 Si 0.785 3.215 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.206 1.206 19 C -0.001 4.001 20 C -0.100 4.100 21 C -0.188 4.188 22 C -0.008 4.008 23 O -0.317 6.317 24 C -0.024 4.024 25 C -0.181 4.181 26 H 0.115 0.885 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.232 0.768 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.112 0.888 45 H 0.073 0.927 46 H 0.133 0.867 47 H 0.122 0.878 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.720 8.769 12.046 17.790 hybrid contribution 1.650 -0.629 -1.555 2.353 sum -8.070 8.140 10.490 15.538 Atomic orbital electron populations 1.21778 0.91641 1.01893 1.03003 1.20778 0.98001 0.97021 0.90857 1.22101 1.02832 0.92133 1.03350 1.21078 0.80072 0.79138 0.87920 1.90620 1.55649 1.50759 1.50861 1.48590 1.05388 1.58195 1.21425 1.22615 0.86527 0.99839 0.93276 1.23015 0.95004 0.99518 0.99435 1.19704 0.89342 0.81637 0.89522 1.86090 1.36785 1.40160 1.77436 1.21695 0.95286 1.48609 0.94659 0.92739 1.25576 0.99089 0.93207 0.98378 1.69606 1.17921 1.45958 1.21342 0.85596 0.77831 0.78632 0.79465 1.19491 1.20331 1.20552 1.22129 0.93786 0.96171 0.87981 1.21419 1.01294 0.93525 0.93811 1.22220 1.01874 0.96731 0.97997 1.22464 0.97119 0.96664 0.84595 1.87891 1.71655 1.25169 1.47022 1.22832 1.00070 0.80802 0.98672 1.22359 1.02059 1.01029 0.92635 0.88476 0.92956 0.93860 0.90551 0.93070 0.88090 0.88585 0.90676 0.90996 0.91676 0.76802 0.91754 0.94201 0.91242 0.89713 0.91245 0.94215 0.93134 0.88762 0.92680 0.86651 0.87754 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 7.13 71.98 0.51 -2.49 16 2 C -0.06 -1.62 0.31 -52.93 -0.02 -1.64 16 3 C -0.15 -2.85 7.61 71.98 0.55 -2.30 16 4 C 0.53 19.51 5.11 87.66 0.45 19.96 16 5 O -0.60 -27.07 16.13 -3.05 -0.05 -27.12 16 6 N -0.60 -23.24 3.31 -811.75 -2.69 -25.92 16 7 C 0.10 3.25 5.29 86.73 0.46 3.71 16 8 C -0.13 -5.36 5.64 31.79 0.18 -5.19 16 9 C 0.24 11.48 0.89 -10.15 -0.01 11.47 16 10 O -0.59 -30.75 13.18 -148.98 -1.96 -32.71 16 11 C -0.56 -29.45 8.25 25.60 0.21 -29.23 16 12 H 0.05 2.86 7.77 -2.91 -0.02 2.84 16 13 C 0.04 1.95 5.30 84.66 0.45 2.40 16 14 N -0.91 -45.86 10.79 21.45 0.23 -45.62 16 15 Si 0.96 40.71 29.54 68.60 2.03 42.74 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 17 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 19 C 0.12 5.61 6.10 86.86 0.53 6.14 16 20 C -0.08 -1.89 1.35 -10.67 -0.01 -1.90 16 21 C -0.15 -4.21 4.85 30.69 0.15 -4.06 16 22 C 0.07 1.72 6.84 72.02 0.49 2.21 16 23 O -0.40 -9.41 10.77 -148.98 -1.60 -11.02 16 24 C 0.05 0.88 6.84 72.01 0.49 1.37 16 25 C -0.14 -2.27 4.73 30.68 0.15 -2.13 16 26 H 0.10 1.63 5.94 -2.39 -0.01 1.62 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.04 1.22 6.56 -2.38 -0.02 1.20 16 29 H 0.08 1.41 4.85 -2.39 -0.01 1.40 16 30 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 31 H 0.10 1.28 7.20 -2.39 -0.02 1.27 16 32 H 0.10 2.51 5.45 -2.39 -0.01 2.50 16 33 H 0.08 2.33 5.51 -2.38 -0.01 2.31 16 34 H 0.07 3.08 7.84 -2.39 -0.02 3.06 16 35 H 0.06 2.66 8.03 -2.38 -0.02 2.64 16 36 H 0.38 19.87 6.93 -74.06 -0.51 19.35 16 37 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 38 H 0.04 2.02 8.00 -2.39 -0.02 2.00 16 39 H 0.07 3.11 8.02 -2.39 -0.02 3.09 16 40 H 0.08 2.02 4.65 -2.39 -0.01 2.01 16 41 H 0.07 1.97 6.58 -2.39 -0.02 1.96 16 42 H 0.04 1.41 7.21 -2.39 -0.02 1.40 16 43 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.10 1.11 7.03 -2.39 -0.02 1.09 16 48 H 0.08 1.27 6.04 -2.39 -0.01 1.26 16 Total: -1.00 -63.41 352.00 0.99 -62.42 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: 0.46 Total: 38.92 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 4.58 Total: -1.68 kcal Atomic # 7 Polarization: -69.09 SS G_CDS: -2.46 Total: -71.55 kcal Atomic # 8 Polarization: -67.23 SS G_CDS: -3.62 Total: -70.85 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -63.41 0.99 -62.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014887.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.018 kcal (2) G-P(sol) polarization free energy of solvation -63.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds