Wall clock time and date at job start Fri Apr 10 2020 22:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46943 * 2 1 4 4 C 1.52998 * 109.47201 * 240.00024 * 2 1 3 5 5 O 1.45196 * 109.47233 * 119.99801 * 2 1 3 6 6 C 1.34231 * 117.00262 * 60.00229 * 5 2 1 7 7 O 1.20821 * 119.99481 * 359.97438 * 6 5 2 8 8 C 1.50699 * 120.00154 * 179.97438 * 6 5 2 9 9 C 1.50703 * 109.47227 * 299.99809 * 8 6 5 10 10 O 1.21279 * 119.99926 * 240.00254 * 9 8 6 11 11 N 1.34775 * 119.99773 * 59.99855 * 9 8 6 12 12 C 1.46499 * 120.00012 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47480 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99967 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00363 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99700 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99959 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47120 * 90.00351 * 17 15 13 19 19 H 1.48508 * 109.46685 * 209.99553 * 17 15 13 20 20 H 1.48494 * 109.47357 * 329.99632 * 17 15 13 21 21 C 1.52997 * 109.47265 * 59.99914 * 8 6 5 22 22 C 1.52999 * 109.47592 * 180.02562 * 21 8 6 23 23 C 1.53006 * 109.46626 * 300.00035 * 22 21 8 24 24 C 1.52997 * 109.47164 * 59.99702 * 23 22 21 25 25 C 1.52996 * 109.46861 * 179.97438 * 8 6 5 26 26 H 1.09002 * 109.46856 * 299.99685 * 1 2 3 27 27 H 1.08995 * 109.47425 * 60.00359 * 1 2 3 28 28 H 1.09004 * 109.47195 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46629 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46611 * 300.00038 * 3 2 1 31 31 H 1.08997 * 109.47195 * 59.99977 * 3 2 1 32 32 H 1.09004 * 109.46619 * 299.99830 * 4 2 1 33 33 H 1.08995 * 109.47244 * 59.99506 * 4 2 1 34 34 H 1.08991 * 109.47467 * 180.02562 * 4 2 1 35 35 H 0.96998 * 120.00166 * 0.02562 * 11 9 8 36 36 H 1.09001 * 109.47271 * 300.00468 * 12 11 9 37 37 H 1.09000 * 109.47392 * 59.99750 * 12 11 9 38 38 H 0.96994 * 119.99884 * 179.97438 * 16 15 13 39 39 H 1.09000 * 109.47140 * 59.99748 * 21 8 6 40 40 H 1.09002 * 109.47045 * 299.99841 * 21 8 6 41 41 H 1.08993 * 109.47839 * 180.02562 * 22 21 8 42 42 H 1.09000 * 109.47160 * 59.99666 * 22 21 8 43 43 H 1.09001 * 109.46998 * 179.97438 * 23 22 21 44 44 H 1.09000 * 109.47050 * 299.99699 * 23 22 21 45 45 H 1.09000 * 109.47140 * 60.00051 * 24 23 22 46 46 H 1.09001 * 109.47230 * 179.97438 * 24 23 22 47 47 H 1.08992 * 109.47534 * 60.00272 * 25 8 6 48 48 H 1.08996 * 109.47134 * 299.99466 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6534 -1.9684 1.3379 7 8 0.9560 -2.5024 0.5083 8 6 2.1184 -2.7436 2.5437 9 6 3.6247 -2.7836 2.5649 10 8 4.2036 -3.8487 2.5283 11 7 4.3285 -1.6357 2.6246 12 6 5.7928 -1.6745 2.6447 13 6 6.3317 -0.2689 2.7136 14 1 5.6515 0.5696 2.7394 15 6 7.6932 -0.0531 2.7427 16 7 8.5216 -1.0742 2.7108 17 14 8.3612 1.6893 2.8273 18 1 8.5179 2.0909 4.2484 19 1 9.6806 1.7471 2.1483 20 1 7.4162 2.6150 2.1526 21 6 1.6083 -2.0630 3.8154 22 6 2.0808 -2.8497 5.0396 23 6 1.5342 -4.2771 4.9707 24 6 2.0443 -4.9577 3.6989 25 6 1.5708 -4.1706 2.4747 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6765 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 -1.7489 -1.2491 33 1 1.6766 -0.2075 -2.1392 34 1 3.1299 -0.7217 -1.2490 35 1 3.8654 -0.7839 2.6542 36 1 6.1295 -2.2355 3.5165 37 1 6.1560 -2.1592 1.7385 38 1 9.4794 -0.9224 2.7309 39 1 0.5188 -2.0341 3.8001 40 1 1.9981 -1.0463 3.8648 41 1 1.7171 -2.3652 5.9456 42 1 3.1704 -2.8783 5.0548 43 1 1.8712 -4.8378 5.8426 44 1 0.4447 -4.2486 4.9555 45 1 3.1338 -4.9862 3.7141 46 1 1.6552 -5.9747 3.6500 47 1 1.9338 -4.6557 1.5687 48 1 0.4813 -4.1413 2.4596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846033744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:11 Heat of formation + Delta-G solvation = -170.154275 kcal Electronic energy + Delta-G solvation = -28530.109207 eV Core-core repulsion = 24776.269654 eV Total energy + Delta-G solvation = -3753.839553 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.63651 -40.97780 -38.57971 -37.72118 -36.24633 -35.18910 -34.38631 -32.57791 -31.70774 -29.25419 -28.38960 -28.27566 -25.92972 -24.90151 -23.86080 -22.96047 -22.05339 -20.77020 -20.62436 -18.88810 -18.22185 -17.75655 -17.54505 -17.06256 -16.74091 -16.33106 -16.04638 -15.73358 -15.36049 -15.15231 -14.99531 -14.72607 -14.59024 -14.07700 -13.98100 -13.82794 -13.51949 -13.37198 -13.17039 -13.14479 -13.08268 -12.93973 -12.87713 -12.86266 -12.72404 -12.49580 -12.24450 -12.22779 -12.06273 -11.66585 -11.54441 -11.47690 -11.40634 -11.14309 -10.97147 -10.79316 -10.52983 -9.83572 -8.28484 -6.44499 0.87926 1.33133 1.43106 1.45345 1.56494 1.84387 2.28431 2.48713 3.06557 3.22269 3.54750 3.57243 3.71520 3.80120 3.86993 3.95653 4.08838 4.20239 4.23443 4.40788 4.50274 4.55819 4.61013 4.62713 4.77062 4.77945 4.81764 4.87089 4.89218 4.95643 5.00187 5.08776 5.12573 5.17395 5.22692 5.22922 5.24920 5.28763 5.29478 5.33327 5.43298 5.47366 5.59825 5.70904 5.84345 6.63277 6.64666 6.80458 7.21995 7.38215 8.83652 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.010589 B = 0.005816 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.658861 B = 4813.255457 C = 6592.862364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.350 6.350 6 C 0.481 3.519 7 O -0.505 6.505 8 C -0.066 4.066 9 C 0.512 3.488 10 O -0.574 6.574 11 N -0.694 5.694 12 C 0.270 3.730 13 C -0.551 4.551 14 H 0.082 0.918 15 C 0.007 3.993 16 N -0.930 5.930 17 Si 0.981 3.019 18 H -0.269 1.269 19 H -0.285 1.285 20 H -0.255 1.255 21 C -0.100 4.100 22 C -0.122 4.122 23 C -0.113 4.113 24 C -0.134 4.134 25 C -0.075 4.075 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.045 0.955 35 H 0.407 0.593 36 H -0.007 1.007 37 H -0.015 1.015 38 H 0.268 0.732 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.033 0.967 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.057 0.943 46 H 0.079 0.921 47 H 0.048 0.952 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.079 4.022 -0.258 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.071 3.929 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.267 6.267 6 C 0.324 3.676 7 O -0.394 6.394 8 C -0.070 4.070 9 C 0.297 3.703 10 O -0.455 6.455 11 N -0.343 5.343 12 C 0.148 3.852 13 C -0.589 4.589 14 H 0.100 0.900 15 C -0.193 4.193 16 N -0.569 5.569 17 Si 0.804 3.196 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.178 1.178 21 C -0.137 4.137 22 C -0.160 4.160 23 C -0.151 4.151 24 C -0.171 4.171 25 C -0.113 4.113 26 H 0.092 0.908 27 H 0.112 0.888 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.122 0.878 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.064 0.936 35 H 0.244 0.756 36 H 0.011 0.989 37 H 0.003 0.997 38 H 0.077 0.923 39 H 0.126 0.874 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.076 0.924 46 H 0.098 0.902 47 H 0.067 0.933 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.670 3.134 -0.574 19.927 hybrid contribution 1.052 0.531 -0.384 1.240 sum -18.618 3.665 -0.958 19.000 Atomic orbital electron populations 1.22422 0.92382 1.03856 1.04384 1.22566 0.95551 0.93037 0.81729 1.21902 1.01895 0.91128 1.04686 1.22479 1.01000 1.02174 0.98345 1.86536 1.69592 1.24401 1.46214 1.23081 0.77037 0.81086 0.86415 1.90542 1.35928 1.70217 1.42686 1.21041 0.92312 0.98795 0.94898 1.20404 0.89183 0.84129 0.76576 1.90598 1.72170 1.30804 1.51927 1.46230 1.08269 1.08441 1.71376 1.18563 0.75477 0.97098 0.94112 1.21547 0.92759 0.91943 1.52658 0.90041 1.26014 0.96995 1.02404 0.93882 1.70135 1.03633 1.33118 1.49997 0.85218 0.77640 0.78068 0.78711 1.19451 1.21049 1.17844 1.21670 1.03070 0.99152 0.89839 1.21594 0.99710 0.96653 0.98012 1.21558 1.01632 0.94792 0.97068 1.21793 1.02043 0.99278 0.93994 1.21238 1.01141 0.89589 0.99353 0.90773 0.88841 0.91745 0.92663 0.87828 0.90316 0.92104 0.88363 0.93609 0.75593 0.98913 0.99748 0.92288 0.87368 0.89897 0.88349 0.94807 0.91078 0.89339 0.92428 0.90228 0.93293 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.34 8.37 71.98 0.60 -2.74 16 2 C 0.11 2.55 1.13 -10.79 -0.01 2.54 16 3 C -0.14 -2.72 8.85 71.98 0.64 -2.08 16 4 C -0.18 -4.75 8.37 71.98 0.60 -4.15 16 5 O -0.35 -10.29 8.25 -51.43 -0.42 -10.71 16 6 C 0.48 15.07 5.85 71.24 0.42 15.48 16 7 O -0.51 -16.53 11.48 21.98 0.25 -16.28 16 8 C -0.07 -2.07 0.57 -53.68 -0.03 -2.10 16 9 C 0.51 21.48 4.95 87.66 0.43 21.91 16 10 O -0.57 -28.55 13.66 -3.03 -0.04 -28.59 16 11 N -0.69 -30.62 5.20 -466.80 -2.43 -33.05 16 12 C 0.27 14.96 5.43 85.63 0.46 15.42 16 13 C -0.55 -30.04 9.28 25.60 0.24 -29.81 16 14 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 15 C 0.01 0.37 5.46 84.66 0.46 0.83 16 16 N -0.93 -56.00 13.29 21.45 0.28 -55.72 16 17 Si 0.98 42.09 29.54 68.60 2.03 44.11 16 18 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 21 C -0.10 -2.38 4.57 30.59 0.14 -2.24 16 22 C -0.12 -2.95 5.70 30.60 0.17 -2.77 16 23 C -0.11 -2.47 5.92 30.60 0.18 -2.29 16 24 C -0.13 -3.76 5.63 30.61 0.17 -3.59 16 25 C -0.08 -2.22 3.67 30.61 0.11 -2.11 16 26 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.50 5.89 -2.39 -0.01 1.49 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.83 5.89 -2.39 -0.01 1.82 16 33 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.41 15.89 6.41 -92.71 -0.59 15.29 16 36 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 38 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 39 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.08 1.95 7.54 -2.39 -0.02 1.94 16 41 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.03 1.07 7.22 -2.39 -0.02 1.06 16 43 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.06 2.12 5.51 -2.39 -0.01 2.11 16 46 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.05 1.68 8.06 -2.39 -0.02 1.66 16 48 H 0.10 2.34 8.10 -2.39 -0.02 2.32 16 Total: -1.00 -70.94 370.98 4.61 -66.33 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.35 Total: 31.59 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 4.59 Total: 2.31 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -2.14 Total: -88.76 kcal Atomic # 8 Polarization: -55.37 SS G_CDS: -0.21 Total: -55.58 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -70.94 4.61 -66.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846033744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.825 kcal (2) G-P(sol) polarization free energy of solvation -70.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds