Wall clock time and date at job start Fri Apr 10 2020 22:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47114 * 2 1 4 4 N 1.46510 * 109.46720 * 119.99356 * 2 1 3 5 5 C 1.46762 * 124.34544 * 120.00284 * 4 2 1 6 6 C 1.54482 * 105.47242 * 163.00611 * 5 4 2 7 7 H 1.09001 * 110.96903 * 267.26009 * 6 5 4 8 8 C 1.52992 * 110.97007 * 143.53384 * 6 5 4 9 9 O 1.45201 * 109.46960 * 175.00151 * 8 6 5 10 10 C 1.34235 * 116.99973 * 179.97438 * 9 8 6 11 11 O 1.20823 * 120.00023 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99801 * 179.97438 * 10 9 8 13 13 C 1.52999 * 109.47004 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47303 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47303 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47525 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99441 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00075 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00481 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99886 * 179.73007 * 18 16 15 21 21 H 1.48502 * 109.46964 * 270.27509 * 20 18 16 22 22 H 1.48505 * 109.47036 * 30.26897 * 20 18 16 23 23 H 1.48490 * 109.47395 * 150.27411 * 20 18 16 24 24 C 1.54632 * 101.76478 * 25.41333 * 6 5 4 25 25 C 1.34418 * 124.35088 * 300.02843 * 4 2 1 26 26 O 1.21285 * 124.94370 * 0.38324 * 25 4 2 27 27 H 1.09003 * 109.46913 * 60.00745 * 1 2 3 28 28 H 1.08999 * 109.47435 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47780 * 300.00634 * 1 2 3 30 30 H 1.08993 * 109.47422 * 239.99273 * 2 1 3 31 31 H 1.08999 * 109.46950 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46622 * 299.99432 * 3 2 1 33 33 H 1.09003 * 109.47028 * 59.99534 * 3 2 1 34 34 H 1.08995 * 110.24585 * 44.00662 * 5 4 2 35 35 H 1.09002 * 110.24514 * 282.00067 * 5 4 2 36 36 H 1.08997 * 109.47327 * 55.00372 * 8 6 5 37 37 H 1.09005 * 109.46997 * 294.99570 * 8 6 5 38 38 H 1.09003 * 109.47112 * 60.00754 * 12 10 9 39 39 H 1.08993 * 109.47444 * 300.00378 * 12 10 9 40 40 H 1.09000 * 109.47527 * 60.00006 * 13 12 10 41 41 H 1.09007 * 109.47302 * 300.00466 * 13 12 10 42 42 H 1.08995 * 109.47540 * 59.99980 * 14 13 12 43 43 H 1.09001 * 109.46719 * 299.99780 * 14 13 12 44 44 H 1.09009 * 109.47378 * 59.99763 * 15 14 13 45 45 H 1.08998 * 109.47458 * 300.00225 * 15 14 13 46 46 H 0.97005 * 119.99656 * 359.72741 * 19 18 16 47 47 H 1.09001 * 110.48679 * 93.87837 * 24 6 5 48 48 H 1.09001 * 110.48640 * 216.52575 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 1.1964 5 6 2.8655 -1.8887 1.1730 6 6 3.4717 -1.9924 2.5901 7 1 4.4398 -1.4937 2.6377 8 6 3.5892 -3.4531 3.0298 9 8 4.2689 -3.5196 4.3112 10 6 4.4532 -4.7392 4.8407 11 8 4.0601 -5.7188 4.2527 12 6 5.1514 -4.8868 6.1680 13 6 5.2311 -6.3686 6.5404 14 6 5.9394 -6.5184 7.8882 15 6 6.0197 -8.0003 8.2603 16 6 6.7179 -8.1479 9.5877 17 1 7.0689 -7.2722 10.1134 18 6 6.9086 -9.4008 10.1307 19 7 6.4807 -10.4670 9.4907 20 14 7.7808 -9.5842 11.7724 21 1 9.2411 -9.7270 11.5438 22 1 7.5255 -8.3818 12.6057 23 1 7.2693 -10.7896 12.4727 24 6 2.4194 -1.2419 3.4389 25 6 1.7474 -0.3084 2.4563 26 8 1.0638 0.6459 2.7610 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3635 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8898 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9564 0.8900 34 1 3.6565 -1.7769 0.4316 35 1 2.2645 -2.7714 0.9544 36 1 4.1590 -4.0114 2.2870 37 1 2.5930 -3.8854 3.1240 38 1 4.5929 -4.3488 6.9341 39 1 6.1583 -4.4758 6.0965 40 1 5.7897 -6.9063 5.7743 41 1 4.2242 -6.7800 6.6118 42 1 5.3805 -5.9809 8.6542 43 1 6.9463 -6.1070 7.8172 44 1 6.5789 -8.5375 7.4943 45 1 5.0130 -8.4122 8.3312 46 1 6.0274 -10.3717 8.6384 47 1 1.6956 -1.9422 3.8558 48 1 2.9043 -0.6747 4.2335 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847767779.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:14 Heat of formation + Delta-G solvation = -156.839727 kcal Electronic energy + Delta-G solvation = -24979.615159 eV Core-core repulsion = 21226.352968 eV Total energy + Delta-G solvation = -3753.262191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.18456 -40.45882 -37.39274 -36.65016 -35.56712 -35.17889 -32.94260 -31.43951 -29.82444 -28.67596 -27.66076 -26.51975 -25.14571 -22.92386 -22.73547 -21.41190 -20.83327 -20.23037 -19.34029 -17.79453 -17.24375 -17.12739 -16.70497 -16.59820 -16.07039 -15.57334 -15.12566 -14.58795 -14.34022 -14.21931 -14.09661 -13.75523 -13.65832 -13.28532 -13.11326 -12.95679 -12.83106 -12.52359 -12.45784 -12.39152 -12.25179 -11.98186 -11.76220 -11.61410 -11.45760 -11.19718 -11.02536 -10.87321 -10.81178 -10.62667 -10.47825 -10.11132 -9.97979 -9.81296 -9.68632 -9.21636 -8.50330 -8.29514 -6.33247 -4.02240 2.16344 2.18922 2.27000 2.61864 3.44837 3.48674 3.64428 3.78118 3.85220 4.10411 4.30303 4.46030 4.55166 4.56769 4.66302 4.72104 4.78430 4.85301 4.93696 5.02058 5.06810 5.14061 5.16062 5.16557 5.19914 5.30652 5.38070 5.41482 5.44190 5.50453 5.63396 5.72112 5.78003 5.92205 6.05060 6.15647 6.24499 6.32737 6.60758 6.66480 6.77621 6.97876 7.44747 7.57266 7.68457 7.77226 8.25106 8.49941 8.91840 9.70537 11.07529 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.046161 B = 0.001649 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.422895 B =16976.766378 C =17221.685392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.152 3.848 3 C -0.168 4.168 4 N -0.618 5.618 5 C 0.111 3.889 6 C -0.100 4.100 7 H 0.106 0.894 8 C 0.076 3.924 9 O -0.359 6.359 10 C 0.462 3.538 11 O -0.505 6.505 12 C -0.111 4.111 13 C -0.110 4.110 14 C -0.103 4.103 15 C 0.006 3.994 16 C -0.603 4.603 17 H 0.049 0.951 18 C 0.013 3.987 19 N -0.914 5.914 20 Si 1.072 2.928 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.285 1.285 24 C -0.150 4.150 25 C 0.520 3.480 26 O -0.527 6.527 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.007 0.993 45 H 0.007 0.993 46 H 0.269 0.731 47 H 0.106 0.894 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.363 22.709 -21.881 32.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.050 3.950 3 C -0.226 4.226 4 N -0.354 5.354 5 C -0.013 4.013 6 C -0.119 4.119 7 H 0.124 0.876 8 C 0.001 3.999 9 O -0.276 6.276 10 C 0.305 3.695 11 O -0.392 6.392 12 C -0.149 4.149 13 C -0.147 4.147 14 C -0.141 4.141 15 C -0.031 4.031 16 C -0.641 4.641 17 H 0.067 0.933 18 C -0.191 4.191 19 N -0.551 5.551 20 Si 0.900 3.100 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.210 1.210 24 C -0.190 4.190 25 C 0.308 3.692 26 O -0.403 6.403 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.025 0.975 45 H 0.026 0.974 46 H 0.080 0.920 47 H 0.124 0.876 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.384 21.862 -20.891 31.379 hybrid contribution -0.528 0.970 -1.388 1.774 sum -8.912 22.832 -22.279 33.122 Atomic orbital electron populations 1.22192 0.94566 1.02471 1.03444 1.20962 0.94597 0.93154 0.86256 1.22189 1.01300 0.95702 1.03424 1.48467 1.51609 1.28915 1.06385 1.22002 0.94275 0.88138 0.96848 1.22124 1.00468 0.95234 0.94054 0.87606 1.22902 0.97854 0.95523 0.83603 1.86514 1.71420 1.33527 1.36142 1.24194 0.76804 0.80418 0.88080 1.90680 1.47224 1.39383 1.61886 1.21595 1.01529 1.01471 0.90302 1.21591 1.02296 0.91480 0.99349 1.21517 0.98708 1.00496 0.93363 1.19233 0.96390 0.90709 0.96748 1.22105 1.41194 0.95053 1.05779 0.93291 1.25864 0.96765 0.92333 1.04119 1.70747 1.36690 1.30977 1.16671 0.83509 0.76066 0.75510 0.74893 1.21490 1.21510 1.21022 1.22474 0.98867 0.99256 0.98448 1.20900 0.80001 0.84621 0.83681 1.90707 1.39282 1.28854 1.81447 0.91363 0.92447 0.90910 0.89385 0.92435 0.91370 0.90942 0.89609 0.90533 0.90430 0.90660 0.87733 0.87751 0.91587 0.91589 0.92986 0.93002 0.97455 0.97444 0.92047 0.87559 0.87322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 9.20 37.16 0.34 -0.74 16 2 C 0.15 0.90 3.48 -67.93 -0.24 0.66 16 3 C -0.17 -1.04 9.20 37.16 0.34 -0.70 16 4 N -0.62 -4.23 2.83 -164.84 -0.47 -4.70 16 5 C 0.11 0.50 6.87 -3.12 -0.02 0.48 16 6 C -0.10 -0.56 3.42 -88.99 -0.30 -0.86 16 7 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 8 C 0.08 0.57 4.76 37.15 0.18 0.75 16 9 O -0.36 -3.68 10.19 -39.27 -0.40 -4.08 16 10 C 0.46 5.91 7.96 36.00 0.29 6.20 16 11 O -0.50 -8.01 15.73 -18.75 -0.29 -8.30 16 12 C -0.11 -1.38 5.81 -27.88 -0.16 -1.54 16 13 C -0.11 -1.81 4.50 -26.73 -0.12 -1.93 16 14 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 15 C 0.01 0.16 4.28 -27.88 -0.12 0.04 16 16 C -0.60 -17.38 9.11 -34.44 -0.31 -17.69 16 17 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 18 C 0.01 0.37 5.46 -17.82 -0.10 0.28 16 19 N -0.91 -28.49 13.65 55.43 0.76 -27.73 16 20 Si 1.07 25.53 29.90 -169.99 -5.08 20.45 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C -0.15 -1.08 6.39 -26.74 -0.17 -1.25 16 25 C 0.52 4.84 7.41 -10.86 -0.08 4.76 16 26 O -0.53 -6.81 15.12 5.55 0.08 -6.72 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.65 6.77 -51.93 -0.35 0.30 16 30 H 0.09 0.34 8.07 -51.93 -0.42 -0.08 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.64 6.80 -51.93 -0.35 0.28 16 34 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.30 7.89 -51.93 -0.41 -0.11 16 36 H 0.08 0.55 8.13 -51.93 -0.42 0.13 16 37 H 0.08 0.58 7.92 -51.93 -0.41 0.17 16 38 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 41 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.01 0.19 8.01 -51.92 -0.42 -0.22 16 45 H 0.01 0.20 8.00 -51.93 -0.42 -0.22 16 46 H 0.27 8.37 7.22 -40.82 -0.29 8.07 16 47 H 0.11 0.74 7.75 -51.93 -0.40 0.34 16 48 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 391.81 15.07 5.90 5.90 Total: -1.00 -35.28 391.81 -8.71 -43.98 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -8.59 Total: -5.07 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -0.62 Total: -13.74 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.29 Total: -32.43 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.61 Total: -19.10 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.08 Total: 20.45 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.28 -8.71 -43.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847767779.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.857 kcal (2) G-P(sol) polarization free energy of solvation -35.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds