Wall clock time and date at job start Fri Apr 10 2020 22:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47099 * 2 1 4 4 N 1.46501 * 109.47101 * 120.00346 * 2 1 3 5 5 C 1.46759 * 124.34706 * 119.99656 * 4 2 1 6 6 C 1.54487 * 105.47000 * 163.00572 * 5 4 2 7 7 H 1.09003 * 110.97137 * 143.57287 * 6 5 4 8 8 C 1.52998 * 110.96852 * 267.29706 * 6 5 4 9 9 O 1.45205 * 109.47038 * 181.91041 * 8 6 5 10 10 C 1.34235 * 116.99860 * 179.97438 * 9 8 6 11 11 O 1.20825 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99907 * 179.97438 * 10 9 8 13 13 C 1.52996 * 109.47188 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47131 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.47127 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47184 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99933 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99912 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47017 * 89.99937 * 20 18 16 22 22 H 1.48507 * 109.47241 * 209.99826 * 20 18 16 23 23 H 1.48500 * 109.47209 * 329.99791 * 20 18 16 24 24 C 1.54626 * 101.79938 * 25.43232 * 6 5 4 25 25 C 1.34418 * 124.34848 * 300.02507 * 4 2 1 26 26 O 1.21283 * 124.94225 * 0.33780 * 25 4 2 27 27 H 1.09001 * 109.47139 * 59.99703 * 1 2 3 28 28 H 1.08998 * 109.47118 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46861 * 300.00121 * 1 2 3 30 30 H 1.09005 * 109.46742 * 240.00055 * 2 1 3 31 31 H 1.09003 * 109.46996 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47367 * 300.00157 * 3 2 1 33 33 H 1.09005 * 109.47279 * 60.00384 * 3 2 1 34 34 H 1.09001 * 110.24801 * 44.00751 * 5 4 2 35 35 H 1.09004 * 110.25235 * 282.00380 * 5 4 2 36 36 H 1.08998 * 109.47413 * 61.91235 * 8 6 5 37 37 H 1.08996 * 109.47599 * 301.91163 * 8 6 5 38 38 H 1.09001 * 109.46665 * 60.00343 * 12 10 9 39 39 H 1.08992 * 109.47413 * 300.00675 * 12 10 9 40 40 H 1.09001 * 109.46993 * 60.00038 * 13 12 10 41 41 H 1.09004 * 109.47298 * 300.00453 * 13 12 10 42 42 H 1.09001 * 109.46832 * 60.00325 * 14 13 12 43 43 H 1.08993 * 109.47194 * 299.99846 * 14 13 12 44 44 H 1.09001 * 109.46801 * 300.00272 * 15 14 13 45 45 H 1.09001 * 109.46998 * 59.99868 * 15 14 13 46 46 H 0.97007 * 120.00011 * 180.02562 * 19 18 16 47 47 H 1.09010 * 110.48398 * 93.86264 * 24 6 5 48 48 H 1.08997 * 110.49046 * 216.50467 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.8655 -1.8889 1.1726 6 6 3.4719 -1.9927 2.5897 7 1 3.5563 -3.0335 2.9026 8 6 4.8303 -1.2920 2.6566 9 8 5.3903 -1.4480 3.9872 10 6 6.5889 -0.8874 4.2135 11 8 7.1512 -0.2860 3.3293 12 6 7.2325 -1.0073 5.5709 13 6 8.5821 -0.2867 5.5607 14 6 9.2359 -0.4089 6.9386 15 6 10.5852 0.3123 6.9287 16 6 11.2289 0.1924 8.2860 17 1 10.7260 -0.3448 9.0766 18 6 12.4602 0.7677 8.5183 19 7 13.0221 0.6626 9.7027 20 14 13.3302 1.6963 7.1508 21 1 12.9315 3.1261 7.1919 22 1 14.7997 1.5867 7.3350 23 1 12.9511 1.1143 5.8382 24 6 2.4200 -1.2428 3.4394 25 6 1.7476 -0.3087 2.4561 26 8 1.0647 0.6461 2.7610 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.6566 -1.7770 0.4311 35 1 2.2646 -2.7716 0.9539 36 1 4.7035 -0.2318 2.4378 37 1 5.5047 -1.7359 1.9243 38 1 7.3850 -2.0600 5.8089 39 1 6.5844 -0.5553 6.3215 40 1 8.4301 0.7660 5.3224 41 1 9.2301 -0.7392 4.8101 42 1 9.3879 -1.4617 7.1764 43 1 8.5881 0.0434 7.6895 44 1 11.2332 -0.1396 6.1776 45 1 10.4327 1.3651 6.6910 46 1 13.8882 1.0677 9.8663 47 1 1.6964 -1.9436 3.8562 48 1 2.9051 -0.6763 4.2342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847767780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:16 Heat of formation + Delta-G solvation = -149.162492 kcal Electronic energy + Delta-G solvation = -25358.776589 eV Core-core repulsion = 21605.847308 eV Total energy + Delta-G solvation = -3752.929281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.23319 -40.41151 -37.36064 -36.62296 -35.52720 -35.12449 -32.66143 -31.29334 -30.30233 -28.64773 -27.62048 -26.92102 -25.65426 -22.92509 -22.58523 -21.36011 -20.53501 -20.10407 -19.28415 -17.73136 -17.33361 -16.96606 -16.75465 -16.60123 -15.83700 -15.76560 -15.08214 -14.59535 -14.27174 -14.20598 -14.12817 -13.99993 -13.84897 -13.24278 -13.00753 -12.94415 -12.62904 -12.49189 -12.48554 -12.26355 -12.13851 -12.03176 -11.79855 -11.72439 -11.59109 -11.43259 -11.18227 -10.86654 -10.81800 -10.60229 -10.53958 -9.95087 -9.89405 -9.69733 -9.55477 -9.19149 -9.15112 -8.51204 -6.02112 -3.99903 2.17164 2.20750 2.40030 2.54750 3.33679 3.40828 3.45834 3.82884 3.88162 4.06572 4.27732 4.48108 4.48168 4.57723 4.69812 4.75141 4.80400 4.88510 4.95388 5.02166 5.10915 5.14869 5.17559 5.19560 5.22983 5.32492 5.33979 5.41996 5.43301 5.49228 5.63834 5.75415 5.83169 5.92617 6.02496 6.18821 6.25652 6.32238 6.59287 6.69692 6.73275 6.93623 7.33736 7.46443 7.69235 7.80521 7.82468 8.56166 9.02775 9.60925 11.11293 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.029036 B = 0.001926 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.091742 B =14532.643816 C =14809.710435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.152 3.848 3 C -0.170 4.170 4 N -0.620 5.620 5 C 0.110 3.890 6 C -0.100 4.100 7 H 0.113 0.887 8 C 0.073 3.927 9 O -0.359 6.359 10 C 0.461 3.539 11 O -0.506 6.506 12 C -0.112 4.112 13 C -0.112 4.112 14 C -0.102 4.102 15 C -0.015 4.015 16 C -0.520 4.520 17 H 0.072 0.928 18 C 0.065 3.935 19 N -0.905 5.905 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 C -0.152 4.152 25 C 0.518 3.482 26 O -0.526 6.526 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.016 0.984 45 H 0.012 0.988 46 H 0.262 0.738 47 H 0.109 0.891 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.125 -7.955 -21.668 34.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.050 3.950 3 C -0.228 4.228 4 N -0.356 5.356 5 C -0.013 4.013 6 C -0.119 4.119 7 H 0.131 0.869 8 C -0.001 4.001 9 O -0.276 6.276 10 C 0.305 3.695 11 O -0.393 6.393 12 C -0.149 4.149 13 C -0.149 4.149 14 C -0.140 4.140 15 C -0.053 4.053 16 C -0.558 4.558 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.190 1.190 24 C -0.192 4.192 25 C 0.306 3.694 26 O -0.402 6.402 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.034 0.966 45 H 0.030 0.970 46 H 0.072 0.928 47 H 0.128 0.872 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -26.207 -7.174 -21.780 34.823 hybrid contribution 0.653 0.494 -0.842 1.175 sum -25.554 -6.680 -22.622 34.776 Atomic orbital electron populations 1.22182 0.94591 1.02323 1.03450 1.20956 0.94544 0.93211 0.86242 1.22200 1.01444 0.95685 1.03457 1.48495 1.51729 1.28997 1.06373 1.22074 0.94116 0.88174 0.96920 1.22169 0.92726 1.01984 0.95012 0.86922 1.22946 0.93355 1.01290 0.82558 1.86498 1.35218 1.71392 1.34505 1.24215 0.78510 0.74977 0.91831 1.90676 1.62961 1.39174 1.46483 1.21592 0.98245 1.04797 0.90275 1.21610 0.92764 1.00469 1.00081 1.21476 0.98091 1.00995 0.93434 1.19579 0.92663 0.95276 0.97763 1.21170 1.03480 1.34795 0.96395 0.91033 1.25042 0.97234 0.95934 0.95395 1.69921 1.17219 1.45564 1.21683 0.86775 0.78626 0.80588 0.83294 1.20311 1.21436 1.18963 1.22471 0.98796 0.99347 0.98542 1.20945 0.80035 0.84712 0.83726 1.90711 1.39307 1.28704 1.81443 0.91406 0.92524 0.90919 0.89415 0.92379 0.91338 0.90923 0.89875 0.89921 0.91152 0.90518 0.87628 0.87637 0.91553 0.91546 0.92535 0.92557 0.96587 0.97018 0.92792 0.87236 0.87274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 9.20 37.16 0.34 -0.73 16 2 C 0.15 0.96 3.47 -67.93 -0.24 0.73 16 3 C -0.17 -1.25 9.20 37.15 0.34 -0.91 16 4 N -0.62 -4.35 2.83 -164.80 -0.47 -4.81 16 5 C 0.11 0.46 6.85 -3.12 -0.02 0.44 16 6 C -0.10 -0.53 3.43 -88.99 -0.30 -0.83 16 7 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 8 C 0.07 0.60 4.75 37.16 0.18 0.77 16 9 O -0.36 -3.74 9.93 -39.27 -0.39 -4.13 16 10 C 0.46 5.92 7.96 36.00 0.29 6.21 16 11 O -0.51 -8.08 15.73 -18.75 -0.29 -8.37 16 12 C -0.11 -1.34 5.81 -27.89 -0.16 -1.50 16 13 C -0.11 -1.76 4.50 -26.73 -0.12 -1.89 16 14 C -0.10 -1.94 5.15 -26.73 -0.14 -2.08 16 15 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 16 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 17 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 18 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 20 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 24 C -0.15 -1.05 6.38 -26.69 -0.17 -1.22 16 25 C 0.52 4.96 7.41 -10.81 -0.08 4.88 16 26 O -0.53 -7.06 15.12 5.56 0.08 -6.98 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.66 6.77 -51.93 -0.35 0.30 16 30 H 0.09 0.37 8.07 -51.93 -0.42 -0.05 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.73 6.80 -51.93 -0.35 0.38 16 34 H 0.08 0.27 7.91 -51.93 -0.41 -0.14 16 35 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 37 H 0.08 0.59 8.13 -51.93 -0.42 0.16 16 38 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 41 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 45 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 46 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 47 H 0.11 0.57 8.14 -51.92 -0.42 0.15 16 48 H 0.11 0.89 7.70 -51.93 -0.40 0.49 16 LS Contribution 389.41 15.07 5.87 5.87 Total: -1.00 -35.37 389.41 -8.35 -43.72 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -8.62 Total: -5.29 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -0.63 Total: -10.09 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.31 Total: -32.20 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.60 Total: -19.47 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.37 -8.35 -43.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847767780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.445 kcal (2) G-P(sol) polarization free energy of solvation -35.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds