Wall clock time and date at job start Fri Apr 10 2020 22:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47099 * 2 1 4 4 N 1.46501 * 109.47101 * 120.00346 * 2 1 3 5 5 C 1.46759 * 124.34706 * 119.99656 * 4 2 1 6 6 C 1.54487 * 105.47000 * 163.00572 * 5 4 2 7 7 H 1.09003 * 110.97137 * 143.57287 * 6 5 4 8 8 C 1.52998 * 110.96852 * 267.29706 * 6 5 4 9 9 O 1.45205 * 109.47038 * 181.91041 * 8 6 5 10 10 C 1.34235 * 116.99860 * 179.97438 * 9 8 6 11 11 O 1.20825 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99907 * 179.97438 * 10 9 8 13 13 C 1.52996 * 109.47188 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47131 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.47127 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47184 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99933 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99912 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47017 * 89.99937 * 20 18 16 22 22 H 1.48507 * 109.47241 * 209.99826 * 20 18 16 23 23 H 1.48500 * 109.47209 * 329.99791 * 20 18 16 24 24 C 1.54626 * 101.79938 * 25.43232 * 6 5 4 25 25 C 1.34418 * 124.34848 * 300.02507 * 4 2 1 26 26 O 1.21283 * 124.94225 * 0.33780 * 25 4 2 27 27 H 1.09001 * 109.47139 * 59.99703 * 1 2 3 28 28 H 1.08998 * 109.47118 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46861 * 300.00121 * 1 2 3 30 30 H 1.09005 * 109.46742 * 240.00055 * 2 1 3 31 31 H 1.09003 * 109.46996 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47367 * 300.00157 * 3 2 1 33 33 H 1.09005 * 109.47279 * 60.00384 * 3 2 1 34 34 H 1.09001 * 110.24801 * 44.00751 * 5 4 2 35 35 H 1.09004 * 110.25235 * 282.00380 * 5 4 2 36 36 H 1.08998 * 109.47413 * 61.91235 * 8 6 5 37 37 H 1.08996 * 109.47599 * 301.91163 * 8 6 5 38 38 H 1.09001 * 109.46665 * 60.00343 * 12 10 9 39 39 H 1.08992 * 109.47413 * 300.00675 * 12 10 9 40 40 H 1.09001 * 109.46993 * 60.00038 * 13 12 10 41 41 H 1.09004 * 109.47298 * 300.00453 * 13 12 10 42 42 H 1.09001 * 109.46832 * 60.00325 * 14 13 12 43 43 H 1.08993 * 109.47194 * 299.99846 * 14 13 12 44 44 H 1.09001 * 109.46801 * 300.00272 * 15 14 13 45 45 H 1.09001 * 109.46998 * 59.99868 * 15 14 13 46 46 H 0.97007 * 120.00011 * 180.02562 * 19 18 16 47 47 H 1.09010 * 110.48398 * 93.86264 * 24 6 5 48 48 H 1.08997 * 110.49046 * 216.50467 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.8655 -1.8889 1.1726 6 6 3.4719 -1.9927 2.5897 7 1 3.5563 -3.0335 2.9026 8 6 4.8303 -1.2920 2.6566 9 8 5.3903 -1.4480 3.9872 10 6 6.5889 -0.8874 4.2135 11 8 7.1512 -0.2860 3.3293 12 6 7.2325 -1.0073 5.5709 13 6 8.5821 -0.2867 5.5607 14 6 9.2359 -0.4089 6.9386 15 6 10.5852 0.3123 6.9287 16 6 11.2289 0.1924 8.2860 17 1 10.7260 -0.3448 9.0766 18 6 12.4602 0.7677 8.5183 19 7 13.0221 0.6626 9.7027 20 14 13.3302 1.6963 7.1508 21 1 12.9315 3.1261 7.1919 22 1 14.7997 1.5867 7.3350 23 1 12.9511 1.1143 5.8382 24 6 2.4200 -1.2428 3.4394 25 6 1.7476 -0.3087 2.4561 26 8 1.0647 0.6461 2.7610 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.6566 -1.7770 0.4311 35 1 2.2646 -2.7716 0.9539 36 1 4.7035 -0.2318 2.4378 37 1 5.5047 -1.7359 1.9243 38 1 7.3850 -2.0600 5.8089 39 1 6.5844 -0.5553 6.3215 40 1 8.4301 0.7660 5.3224 41 1 9.2301 -0.7392 4.8101 42 1 9.3879 -1.4617 7.1764 43 1 8.5881 0.0434 7.6895 44 1 11.2332 -0.1396 6.1776 45 1 10.4327 1.3651 6.6910 46 1 13.8882 1.0677 9.8663 47 1 1.6964 -1.9436 3.8562 48 1 2.9051 -0.6763 4.2342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847767780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:15 Heat of formation + Delta-G solvation = -170.274769 kcal Electronic energy + Delta-G solvation = -25359.692086 eV Core-core repulsion = 21605.847308 eV Total energy + Delta-G solvation = -3753.844778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.89675 -41.29185 -38.20078 -37.41460 -36.66468 -36.07976 -34.64142 -32.22669 -31.61247 -29.25252 -28.17065 -28.13488 -26.69768 -24.11464 -23.46498 -21.92653 -21.87545 -21.46016 -19.91416 -18.90011 -18.55197 -18.01191 -17.64007 -17.58123 -16.67690 -16.43856 -16.28125 -16.16961 -15.20037 -15.08067 -14.89542 -14.72854 -14.64990 -14.51743 -14.04749 -13.87388 -13.80663 -13.63022 -13.41574 -13.38033 -13.05434 -12.88534 -12.73931 -12.57377 -12.36667 -12.26130 -12.16098 -12.12129 -11.95882 -11.75848 -11.69209 -11.63293 -11.36849 -11.30940 -11.22073 -10.75458 -10.64122 -9.74153 -8.28893 -6.32064 1.19255 1.35566 1.36731 1.49206 1.50303 1.64472 2.01726 2.36306 3.06586 3.32514 3.37588 3.51533 3.75324 3.86540 3.95833 4.06223 4.06986 4.10647 4.21081 4.26236 4.36060 4.51791 4.53633 4.62025 4.62684 4.66930 4.68444 4.73386 4.76182 4.81465 4.83778 4.85823 4.92012 5.05172 5.10638 5.18265 5.19397 5.22533 5.25873 5.41436 5.60374 5.65495 5.67243 5.69115 6.13718 6.30234 6.73942 6.76450 7.15441 7.32706 8.87632 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.029036 B = 0.001926 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.091742 B =14532.643816 C =14809.710435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 C -0.167 4.167 4 N -0.618 5.618 5 C 0.109 3.891 6 C -0.087 4.087 7 H 0.142 0.858 8 C 0.067 3.933 9 O -0.352 6.352 10 C 0.466 3.534 11 O -0.543 6.543 12 C -0.107 4.107 13 C -0.102 4.102 14 C -0.095 4.095 15 C -0.018 4.018 16 C -0.531 4.531 17 H 0.037 0.963 18 C 0.002 3.998 19 N -0.951 5.951 20 Si 0.948 3.052 21 H -0.269 1.269 22 H -0.283 1.283 23 H -0.250 1.250 24 C -0.149 4.149 25 C 0.504 3.496 26 O -0.578 6.578 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.121 0.879 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.037 0.963 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.049 0.951 37 H 0.087 0.913 38 H 0.131 0.869 39 H 0.124 0.876 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.017 0.983 45 H 0.013 0.987 46 H 0.266 0.734 47 H 0.130 0.870 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.808 -9.656 -24.266 37.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 C -0.225 4.225 4 N -0.352 5.352 5 C -0.013 4.013 6 C -0.105 4.105 7 H 0.160 0.840 8 C -0.006 4.006 9 O -0.268 6.268 10 C 0.311 3.689 11 O -0.433 6.433 12 C -0.144 4.144 13 C -0.140 4.140 14 C -0.132 4.132 15 C -0.055 4.055 16 C -0.569 4.569 17 H 0.055 0.945 18 C -0.194 4.194 19 N -0.592 5.592 20 Si 0.772 3.228 21 H -0.194 1.194 22 H -0.208 1.208 23 H -0.173 1.173 24 C -0.189 4.189 25 C 0.293 3.707 26 O -0.458 6.458 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.138 0.862 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.057 0.943 34 H 0.117 0.883 35 H 0.132 0.868 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.035 0.965 45 H 0.031 0.969 46 H 0.074 0.926 47 H 0.148 0.852 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -26.904 -8.920 -24.401 37.401 hybrid contribution 0.812 0.990 0.001 1.281 sum -26.092 -7.930 -24.401 36.593 Atomic orbital electron populations 1.22123 0.94722 1.02604 1.02531 1.21135 0.94518 0.92732 0.87117 1.22166 1.01041 0.96698 1.02582 1.48661 1.51191 1.29526 1.05793 1.22357 0.94524 0.87925 0.96458 1.22199 0.90163 1.02669 0.95496 0.84014 1.23195 0.95105 1.00693 0.81634 1.86483 1.33984 1.70515 1.35840 1.24255 0.78844 0.74220 0.91542 1.90668 1.64056 1.40929 1.47650 1.21500 0.96383 1.05954 0.90520 1.21388 0.94651 1.00435 0.97534 1.21332 0.95732 1.00567 0.95601 1.19584 0.95076 0.96066 0.94782 1.21556 1.03651 1.33886 0.97800 0.94468 1.26008 0.98277 0.97131 0.97996 1.70066 1.17946 1.47107 1.24039 0.85688 0.77400 0.79331 0.80417 1.19395 1.20833 1.17326 1.22481 0.99480 0.99156 0.97817 1.21476 0.79647 0.84436 0.85147 1.90680 1.41734 1.30975 1.82420 0.89895 0.91570 0.94249 0.86157 0.92817 0.89657 0.94342 0.88286 0.86802 0.93255 0.89483 0.85118 0.85792 0.92600 0.92123 0.92002 0.92371 0.96484 0.96877 0.92559 0.85211 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.20 71.98 0.66 -1.25 16 2 C 0.15 1.62 3.47 44.99 0.16 1.77 16 3 C -0.17 -2.44 9.20 71.98 0.66 -1.78 16 4 N -0.62 -7.66 2.83 -793.89 -2.25 -9.91 16 5 C 0.11 0.52 6.85 86.84 0.60 1.12 16 6 C -0.09 -0.65 3.43 -9.73 -0.03 -0.68 16 7 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 8 C 0.07 0.97 4.75 71.98 0.34 1.31 16 9 O -0.35 -6.56 9.93 -51.46 -0.51 -7.07 16 10 C 0.47 11.15 7.96 71.24 0.57 11.71 16 11 O -0.54 -16.80 15.73 21.97 0.35 -16.46 16 12 C -0.11 -2.30 5.81 29.85 0.17 -2.13 16 13 C -0.10 -3.07 4.50 30.59 0.14 -2.93 16 14 C -0.09 -3.48 5.15 30.60 0.16 -3.32 16 15 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 16 C -0.53 -30.92 9.66 25.60 0.25 -30.68 16 17 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 18 C 0.00 0.15 5.47 84.65 0.46 0.61 16 19 N -0.95 -60.29 13.96 21.45 0.30 -59.99 16 20 Si 0.95 45.42 27.47 68.60 1.88 47.31 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 23 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 24 C -0.15 -1.86 6.38 30.62 0.20 -1.67 16 25 C 0.50 9.61 7.41 87.93 0.65 10.26 16 26 O -0.58 -16.55 15.12 -3.04 -0.05 -16.60 16 27 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.04 0.74 6.77 -2.39 -0.02 0.73 16 30 H 0.12 0.59 8.07 -2.38 -0.02 0.57 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.04 0.83 6.80 -2.38 -0.02 0.82 16 34 H 0.10 0.24 7.91 -2.39 -0.02 0.22 16 35 H 0.11 -0.03 8.14 -2.38 -0.02 -0.05 16 36 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 37 H 0.09 1.11 8.13 -2.39 -0.02 1.09 16 38 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.06 1.79 8.10 -2.39 -0.02 1.77 16 41 H 0.06 1.89 8.10 -2.38 -0.02 1.87 16 42 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.02 0.79 7.20 -2.39 -0.02 0.78 16 45 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 46 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 47 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 48 H 0.09 1.48 7.70 -2.39 -0.02 1.46 16 Total: -1.00 -80.53 389.41 5.68 -74.85 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 0.86 Total: 6.24 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 5.10 Total: -18.37 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: -1.95 Total: -69.90 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -0.21 Total: -40.12 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.31 kcal Total: -80.53 5.68 -74.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847767780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.421 kcal (2) G-P(sol) polarization free energy of solvation -80.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds