Wall clock time and date at job start Fri Apr 10 2020 22:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21285 * 120.00025 * 2 1 4 4 N 1.34774 * 120.00164 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99872 * 180.27740 * 4 2 1 6 6 H 1.08999 * 109.47075 * 179.72416 * 5 4 2 7 7 C 1.52998 * 109.47356 * 59.72245 * 5 4 2 8 8 C 1.53006 * 109.46994 * 65.00195 * 7 5 4 9 9 C 1.52991 * 109.47285 * 180.02562 * 8 7 5 10 10 C 1.52991 * 109.47568 * 64.99547 * 9 8 7 11 11 C 1.52998 * 109.47346 * 184.99754 * 9 8 7 12 12 C 1.50700 * 109.47003 * 299.72205 * 5 4 2 13 13 O 1.20822 * 120.00167 * 20.00600 * 12 5 4 14 14 O 1.34235 * 120.00115 * 199.99801 * 12 5 4 15 15 C 1.45204 * 117.00159 * 180.02562 * 14 12 5 16 16 C 1.52995 * 109.46885 * 180.02562 * 15 14 12 17 17 C 1.50703 * 115.55104 * 65.10555 * 16 15 14 18 18 H 1.07991 * 119.99985 * 266.10948 * 17 16 15 19 19 C 1.37878 * 119.99659 * 86.11118 * 17 16 15 20 20 N 1.31514 * 120.00567 * 353.70753 * 19 17 16 21 21 Si 1.86808 * 119.99643 * 173.70358 * 19 17 16 22 22 H 1.48493 * 109.46819 * 60.00158 * 21 19 17 23 23 H 1.48504 * 109.46711 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47111 * 299.99978 * 21 19 17 25 25 C 1.53004 * 117.49848 * 279.43184 * 16 15 14 26 26 C 1.52998 * 117.49539 * 210.77720 * 16 15 14 27 27 H 1.09001 * 109.47279 * 239.99970 * 1 2 3 28 28 H 1.09001 * 109.47424 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.46920 * 119.99838 * 1 2 3 30 30 H 0.96990 * 119.99795 * 0.02562 * 4 2 1 31 31 H 1.08996 * 109.47348 * 184.99864 * 7 5 4 32 32 H 1.09000 * 109.47552 * 305.00410 * 7 5 4 33 33 H 1.09010 * 109.46824 * 300.00184 * 8 7 5 34 34 H 1.08993 * 109.47105 * 59.99518 * 8 7 5 35 35 H 1.09007 * 109.47186 * 304.99483 * 9 8 7 36 36 H 1.09001 * 109.47474 * 300.00478 * 10 9 8 37 37 H 1.09002 * 109.47292 * 60.00011 * 10 9 8 38 38 H 1.09002 * 109.47549 * 180.02562 * 10 9 8 39 39 H 1.09007 * 109.46863 * 59.99491 * 11 9 8 40 40 H 1.09005 * 109.47536 * 179.97438 * 11 9 8 41 41 H 1.08994 * 109.47308 * 299.99841 * 11 9 8 42 42 H 1.09005 * 109.46786 * 300.00103 * 15 14 12 43 43 H 1.08991 * 109.46870 * 60.00146 * 15 14 12 44 44 H 0.96993 * 120.00196 * 180.02562 * 20 19 17 45 45 H 1.08998 * 117.49798 * 0.02562 * 25 16 15 46 46 H 1.09000 * 117.49769 * 145.01983 * 25 16 15 47 47 H 1.09006 * 117.49638 * 214.97777 * 26 16 15 48 48 H 1.08995 * 117.50154 * 359.97301 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0067 6 1 4.0093 -2.1947 0.0111 7 6 4.1507 -0.4423 1.2559 8 6 3.7408 -1.2289 2.5026 9 6 4.2449 -0.5039 3.7519 10 6 3.5398 0.8482 3.8764 11 6 3.9447 -1.3515 4.9897 12 6 4.1533 -0.4602 -1.2237 13 8 3.4302 0.2967 -1.8270 14 8 5.4088 -0.6713 -1.6493 15 6 5.8300 0.0437 -2.8409 16 6 7.2786 -0.3223 -3.1699 17 6 7.5143 -1.7599 -3.5556 18 1 7.8094 -2.4788 -2.8057 19 6 7.3532 -2.1573 -4.8660 20 7 6.8755 -1.3140 -5.7550 21 14 7.8136 -3.8936 -5.3787 22 1 7.0036 -4.8691 -4.6058 23 1 7.5469 -4.0686 -6.8291 24 1 9.2556 -4.1235 -5.1088 25 6 8.3826 0.3886 -2.3845 26 6 8.1384 0.7427 -3.8535 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8901 30 1 1.6959 -2.0071 0.0005 31 1 5.2371 -0.3641 1.2166 32 1 3.7158 0.5564 1.2973 33 1 2.6542 -1.3071 2.5419 34 1 4.1755 -2.2275 2.4613 35 1 5.3206 -0.3466 3.6715 36 1 3.7537 1.4521 2.9946 37 1 2.4642 0.6909 3.9568 38 1 3.8994 1.3649 4.7662 39 1 4.4471 -2.3148 4.9009 40 1 4.3043 -0.8351 5.8797 41 1 2.8692 -1.5088 5.0701 42 1 5.1870 -0.2326 -3.6767 43 1 5.7568 1.1169 -2.6655 44 1 6.7618 -1.5938 -6.6768 45 1 8.0768 1.1167 -1.6332 46 1 9.2796 -0.1835 -2.1471 47 1 8.8749 0.4035 -4.5820 48 1 7.6719 1.7039 -4.0693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850020225.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:18 Heat of formation + Delta-G solvation = -119.648877 kcal Electronic energy + Delta-G solvation = -27082.749749 eV Core-core repulsion = 23331.100275 eV Total energy + Delta-G solvation = -3751.649474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.48312 -38.86422 -37.10412 -36.64471 -35.14619 -34.62834 -31.95111 -31.78926 -29.39009 -27.60831 -27.27995 -26.09547 -25.10339 -22.65094 -21.42387 -21.07090 -19.97567 -19.49974 -19.21628 -17.64827 -16.67385 -16.50248 -15.88865 -15.56835 -15.38742 -15.13006 -14.67322 -14.53206 -14.11522 -13.90466 -13.71609 -13.50838 -13.15533 -12.97146 -12.60692 -12.40372 -12.21947 -12.20267 -12.02066 -11.70259 -11.65449 -11.53802 -11.34211 -10.97244 -10.85491 -10.79790 -10.71703 -10.62317 -10.54302 -10.25566 -10.08728 -9.76020 -9.60148 -9.48579 -8.94259 -8.79406 -8.45229 -8.17356 -6.05794 -4.11271 2.67689 2.89452 3.11893 3.29542 3.34629 3.36886 3.57367 4.38975 4.62151 4.73236 4.78703 4.84279 5.08255 5.13826 5.17981 5.22692 5.24516 5.31917 5.33995 5.43877 5.50537 5.58423 5.64526 5.70965 5.73323 5.78602 5.84170 5.98390 6.04643 6.05063 6.10364 6.26926 6.29394 6.35829 6.38059 6.46518 6.57926 6.70898 6.76880 7.06035 7.33516 7.39851 7.51464 7.53375 7.86715 8.34930 8.40204 8.58384 8.90073 9.54219 11.03543 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.014101 B = 0.003657 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.250451 B = 7654.285667 C = 8166.659457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.514 3.486 3 O -0.513 6.513 4 N -0.723 5.723 5 C 0.162 3.838 6 H 0.119 0.881 7 C -0.136 4.136 8 C -0.106 4.106 9 C -0.098 4.098 10 C -0.149 4.149 11 C -0.146 4.146 12 C 0.438 3.562 13 O -0.495 6.495 14 O -0.340 6.340 15 C 0.119 3.881 16 C 0.038 3.962 17 C -0.489 4.489 18 H 0.063 0.937 19 C 0.069 3.931 20 N -0.881 5.881 21 Si 0.893 3.107 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.205 4.205 26 C -0.145 4.145 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.404 0.596 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.037 0.963 44 H 0.262 0.738 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.543 -1.511 17.282 20.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.301 3.699 3 O -0.387 6.387 4 N -0.378 5.378 5 C 0.055 3.945 6 H 0.137 0.863 7 C -0.174 4.174 8 C -0.144 4.144 9 C -0.116 4.116 10 C -0.206 4.206 11 C -0.203 4.203 12 C 0.278 3.722 13 O -0.382 6.382 14 O -0.255 6.255 15 C 0.046 3.954 16 C 0.038 3.962 17 C -0.527 4.527 18 H 0.081 0.919 19 C -0.135 4.135 20 N -0.518 5.518 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.242 4.242 26 C -0.183 4.183 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.239 0.761 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.106 0.894 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.342 -0.455 16.842 19.769 hybrid contribution -0.091 -1.268 -0.716 1.459 sum -10.434 -1.723 16.126 19.284 Atomic orbital electron populations 1.21890 0.92085 1.05315 1.03813 1.20645 0.90272 0.83600 0.75403 1.90718 1.70261 1.31195 1.46533 1.45744 1.05413 1.09244 1.77355 1.20414 0.80931 1.01442 0.91723 0.86316 1.22030 1.02288 1.01531 0.91521 1.21582 1.00959 0.98701 0.93159 1.21108 1.00544 0.95386 0.94573 1.21882 1.00177 0.96781 1.01749 1.21831 1.01364 0.99705 0.97399 1.23733 0.81607 0.80893 0.85964 1.90651 1.57495 1.33977 1.56076 1.86494 1.28826 1.65074 1.45114 1.22839 0.97740 0.91926 0.82920 1.18769 0.85225 0.94100 0.98142 1.20345 1.47062 0.91913 0.93392 0.91928 1.25019 0.94520 0.97304 0.96615 1.69996 1.43593 1.35168 1.03037 0.86654 0.79159 0.84773 0.77397 1.20189 1.21308 1.20114 1.23005 1.02804 1.04335 0.94088 1.22529 1.03830 0.98195 0.93707 0.89807 0.89168 0.89587 0.76132 0.89947 0.88699 0.91981 0.91753 0.91020 0.92095 0.93023 0.93082 0.92708 0.92896 0.92926 0.90921 0.94476 0.92877 0.91556 0.90090 0.89439 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 10.32 36.00 0.37 -1.14 16 2 C 0.51 6.98 6.70 -10.99 -0.07 6.91 16 3 O -0.51 -9.48 12.95 -17.89 -0.23 -9.71 16 4 N -0.72 -8.39 4.65 -54.93 -0.26 -8.64 16 5 C 0.16 2.27 3.12 -69.08 -0.22 2.05 16 6 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 7 C -0.14 -1.75 4.29 -26.73 -0.11 -1.86 16 8 C -0.11 -1.02 4.57 -26.73 -0.12 -1.15 16 9 C -0.10 -0.90 2.92 -90.63 -0.26 -1.17 16 10 C -0.15 -1.45 8.95 37.15 0.33 -1.12 16 11 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 12 C 0.44 8.77 6.95 36.01 0.25 9.02 16 13 O -0.49 -11.42 13.45 -26.51 -0.36 -11.78 16 14 O -0.34 -7.63 10.16 -39.27 -0.40 -8.03 16 15 C 0.12 2.94 5.29 37.15 0.20 3.14 16 16 C 0.04 0.97 1.62 -155.66 -0.25 0.71 16 17 C -0.49 -13.39 8.78 -34.44 -0.30 -13.69 16 18 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 19 C 0.07 1.88 5.38 -17.82 -0.10 1.78 16 20 N -0.88 -25.08 12.88 55.43 0.71 -24.37 16 21 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C -0.21 -4.57 9.96 -26.69 -0.27 -4.84 16 26 C -0.15 -3.46 9.37 -26.70 -0.25 -3.71 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 29 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.40 3.11 8.83 -40.82 -0.36 2.75 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.09 1.44 4.45 -51.93 -0.23 1.21 16 33 H 0.06 0.56 7.75 -51.92 -0.40 0.16 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 36 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 1.98 8.13 -51.93 -0.42 1.56 16 43 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 47 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 48 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 392.57 15.07 5.92 5.92 Total: -1.00 -33.80 392.57 -8.59 -42.39 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -8.49 Total: 4.11 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -0.47 Total: -5.85 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.46 Total: -33.01 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.99 Total: -29.52 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.80 -8.59 -42.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850020225.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.264 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds