Wall clock time and date at job start Fri Apr 10 2020 22:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21285 * 120.00025 * 2 1 4 4 N 1.34774 * 120.00164 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99872 * 180.27740 * 4 2 1 6 6 H 1.08999 * 109.47075 * 179.72416 * 5 4 2 7 7 C 1.52998 * 109.47356 * 59.72245 * 5 4 2 8 8 C 1.53006 * 109.46994 * 65.00195 * 7 5 4 9 9 C 1.52991 * 109.47285 * 180.02562 * 8 7 5 10 10 C 1.52991 * 109.47568 * 64.99547 * 9 8 7 11 11 C 1.52998 * 109.47346 * 184.99754 * 9 8 7 12 12 C 1.50700 * 109.47003 * 299.72205 * 5 4 2 13 13 O 1.20822 * 120.00167 * 20.00600 * 12 5 4 14 14 O 1.34235 * 120.00115 * 199.99801 * 12 5 4 15 15 C 1.45204 * 117.00159 * 180.02562 * 14 12 5 16 16 C 1.52995 * 109.46885 * 180.02562 * 15 14 12 17 17 C 1.50703 * 115.55104 * 65.10555 * 16 15 14 18 18 H 1.07991 * 119.99985 * 266.10948 * 17 16 15 19 19 C 1.37878 * 119.99659 * 86.11118 * 17 16 15 20 20 N 1.31514 * 120.00567 * 353.70753 * 19 17 16 21 21 Si 1.86808 * 119.99643 * 173.70358 * 19 17 16 22 22 H 1.48493 * 109.46819 * 60.00158 * 21 19 17 23 23 H 1.48504 * 109.46711 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47111 * 299.99978 * 21 19 17 25 25 C 1.53004 * 117.49848 * 279.43184 * 16 15 14 26 26 C 1.52998 * 117.49539 * 210.77720 * 16 15 14 27 27 H 1.09001 * 109.47279 * 239.99970 * 1 2 3 28 28 H 1.09001 * 109.47424 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.46920 * 119.99838 * 1 2 3 30 30 H 0.96990 * 119.99795 * 0.02562 * 4 2 1 31 31 H 1.08996 * 109.47348 * 184.99864 * 7 5 4 32 32 H 1.09000 * 109.47552 * 305.00410 * 7 5 4 33 33 H 1.09010 * 109.46824 * 300.00184 * 8 7 5 34 34 H 1.08993 * 109.47105 * 59.99518 * 8 7 5 35 35 H 1.09007 * 109.47186 * 304.99483 * 9 8 7 36 36 H 1.09001 * 109.47474 * 300.00478 * 10 9 8 37 37 H 1.09002 * 109.47292 * 60.00011 * 10 9 8 38 38 H 1.09002 * 109.47549 * 180.02562 * 10 9 8 39 39 H 1.09007 * 109.46863 * 59.99491 * 11 9 8 40 40 H 1.09005 * 109.47536 * 179.97438 * 11 9 8 41 41 H 1.08994 * 109.47308 * 299.99841 * 11 9 8 42 42 H 1.09005 * 109.46786 * 300.00103 * 15 14 12 43 43 H 1.08991 * 109.46870 * 60.00146 * 15 14 12 44 44 H 0.96993 * 120.00196 * 180.02562 * 20 19 17 45 45 H 1.08998 * 117.49798 * 0.02562 * 25 16 15 46 46 H 1.09000 * 117.49769 * 145.01983 * 25 16 15 47 47 H 1.09006 * 117.49638 * 214.97777 * 26 16 15 48 48 H 1.08995 * 117.50154 * 359.97301 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0067 6 1 4.0093 -2.1947 0.0111 7 6 4.1507 -0.4423 1.2559 8 6 3.7408 -1.2289 2.5026 9 6 4.2449 -0.5039 3.7519 10 6 3.5398 0.8482 3.8764 11 6 3.9447 -1.3515 4.9897 12 6 4.1533 -0.4602 -1.2237 13 8 3.4302 0.2967 -1.8270 14 8 5.4088 -0.6713 -1.6493 15 6 5.8300 0.0437 -2.8409 16 6 7.2786 -0.3223 -3.1699 17 6 7.5143 -1.7599 -3.5556 18 1 7.8094 -2.4788 -2.8057 19 6 7.3532 -2.1573 -4.8660 20 7 6.8755 -1.3140 -5.7550 21 14 7.8136 -3.8936 -5.3787 22 1 7.0036 -4.8691 -4.6058 23 1 7.5469 -4.0686 -6.8291 24 1 9.2556 -4.1235 -5.1088 25 6 8.3826 0.3886 -2.3845 26 6 8.1384 0.7427 -3.8535 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8901 30 1 1.6959 -2.0071 0.0005 31 1 5.2371 -0.3641 1.2166 32 1 3.7158 0.5564 1.2973 33 1 2.6542 -1.3071 2.5419 34 1 4.1755 -2.2275 2.4613 35 1 5.3206 -0.3466 3.6715 36 1 3.7537 1.4521 2.9946 37 1 2.4642 0.6909 3.9568 38 1 3.8994 1.3649 4.7662 39 1 4.4471 -2.3148 4.9009 40 1 4.3043 -0.8351 5.8797 41 1 2.8692 -1.5088 5.0701 42 1 5.1870 -0.2326 -3.6767 43 1 5.7568 1.1169 -2.6655 44 1 6.7618 -1.5938 -6.6768 45 1 8.0768 1.1167 -1.6332 46 1 9.2796 -0.1835 -2.1471 47 1 8.8749 0.4035 -4.5820 48 1 7.6719 1.7039 -4.0693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850020225.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:17 Heat of formation + Delta-G solvation = -139.028749 kcal Electronic energy + Delta-G solvation = -27083.590123 eV Core-core repulsion = 23331.100275 eV Total energy + Delta-G solvation = -3752.489849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.86568 -40.29556 -38.53575 -37.92552 -36.89049 -35.76498 -34.03182 -32.78053 -30.20098 -29.18086 -27.99726 -27.70446 -26.91111 -23.69796 -23.04279 -22.58018 -21.21100 -20.89410 -20.68298 -18.89511 -18.39337 -17.89444 -17.43264 -17.21614 -16.63486 -16.43692 -16.22537 -15.83749 -15.42242 -15.10907 -14.83620 -14.67047 -14.43389 -14.16837 -13.88599 -13.68571 -13.55522 -13.30976 -13.07138 -12.95591 -12.89482 -12.81911 -12.74070 -12.59192 -12.40986 -12.17340 -12.12401 -11.81839 -11.65945 -11.56623 -11.51475 -11.42516 -11.32725 -10.80540 -10.60276 -10.51373 -10.22569 -10.01927 -8.13780 -6.26135 1.25497 1.43114 1.44767 1.52587 1.53449 1.98669 2.34575 2.42728 3.14655 3.37251 3.66973 3.79244 3.87416 4.03432 4.07907 4.11386 4.16546 4.29024 4.35269 4.42778 4.46922 4.54885 4.63203 4.64651 4.69952 4.80852 4.83087 4.87304 4.91660 4.92897 5.03268 5.05034 5.10846 5.14293 5.18463 5.25272 5.38728 5.40246 5.43201 5.54379 5.54927 5.56160 5.71832 5.74177 6.34445 6.62332 6.79369 6.87208 7.41869 7.42914 8.95158 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.014101 B = 0.003657 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.250451 B = 7654.285667 C = 8166.659457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.503 3.497 3 O -0.570 6.570 4 N -0.708 5.708 5 C 0.168 3.832 6 H 0.151 0.849 7 C -0.128 4.128 8 C -0.097 4.097 9 C -0.099 4.099 10 C -0.146 4.146 11 C -0.141 4.141 12 C 0.429 3.571 13 O -0.530 6.530 14 O -0.347 6.347 15 C 0.134 3.866 16 C 0.007 3.993 17 C -0.504 4.504 18 H 0.060 0.940 19 C 0.021 3.979 20 N -0.912 5.912 21 Si 0.957 3.043 22 H -0.269 1.269 23 H -0.287 1.287 24 H -0.268 1.268 25 C -0.177 4.177 26 C -0.148 4.148 27 H 0.122 0.878 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.426 0.574 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.035 0.965 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.036 0.964 43 H 0.034 0.966 44 H 0.261 0.739 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.200 -3.749 19.307 22.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.292 3.708 3 O -0.448 6.448 4 N -0.364 5.364 5 C 0.061 3.939 6 H 0.168 0.832 7 C -0.167 4.167 8 C -0.134 4.134 9 C -0.117 4.117 10 C -0.204 4.204 11 C -0.198 4.198 12 C 0.271 3.729 13 O -0.419 6.419 14 O -0.262 6.262 15 C 0.060 3.940 16 C 0.007 3.993 17 C -0.541 4.541 18 H 0.078 0.922 19 C -0.179 4.179 20 N -0.550 5.550 21 Si 0.782 3.218 22 H -0.194 1.194 23 H -0.212 1.212 24 H -0.192 1.192 25 C -0.214 4.214 26 C -0.186 4.186 27 H 0.140 0.860 28 H 0.101 0.899 29 H 0.119 0.881 30 H 0.265 0.735 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.104 0.896 46 H 0.108 0.892 47 H 0.091 0.909 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.021 -2.741 18.894 22.045 hybrid contribution 0.070 -0.512 -1.321 1.419 sum -10.951 -3.253 17.573 20.960 Atomic orbital electron populations 1.21896 0.88196 1.05717 1.06322 1.21584 0.92221 0.83061 0.73935 1.90706 1.71727 1.33254 1.49075 1.45687 1.04397 1.10100 1.76255 1.20591 0.82340 1.02196 0.88809 0.83169 1.21964 1.01396 1.00795 0.92514 1.21542 1.01709 0.98856 0.91302 1.21115 1.00004 0.95265 0.95319 1.21856 1.00593 0.97034 1.00891 1.21784 1.01967 0.99633 0.96436 1.25121 0.80314 0.80494 0.86983 1.90633 1.58030 1.35656 1.57543 1.86507 1.30617 1.64980 1.44095 1.22405 0.97012 0.91808 0.82812 1.18874 0.86046 0.93937 1.00459 1.20601 1.46996 0.92909 0.93641 0.92227 1.25783 0.94327 1.01177 0.96588 1.70124 1.44608 1.37083 1.03180 0.85640 0.79191 0.80125 0.76893 1.19362 1.21239 1.19245 1.23007 1.01565 1.03431 0.93386 1.22465 1.03390 0.98102 0.94624 0.86004 0.89933 0.88073 0.73496 0.91010 0.91227 0.90907 0.89935 0.91743 0.94606 0.92587 0.92311 0.91969 0.92525 0.92194 0.94601 0.94747 0.93030 0.89611 0.89163 0.90900 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 10.32 71.24 0.74 -1.78 16 2 C 0.50 13.25 6.70 87.66 0.59 13.84 16 3 O -0.57 -21.63 12.95 19.37 0.25 -21.38 16 4 N -0.71 -15.17 4.65 -446.10 -2.07 -17.24 16 5 C 0.17 4.52 3.12 44.24 0.14 4.66 16 6 H 0.15 3.10 8.14 -2.39 -0.02 3.08 16 7 C -0.13 -3.23 4.29 30.60 0.13 -3.10 16 8 C -0.10 -1.63 4.57 30.59 0.14 -1.49 16 9 C -0.10 -1.65 2.92 -10.80 -0.03 -1.68 16 10 C -0.15 -2.76 8.95 71.98 0.64 -2.11 16 11 C -0.14 -1.79 9.19 71.98 0.66 -1.13 16 12 C 0.43 17.46 6.95 71.24 0.49 17.96 16 13 O -0.53 -25.34 13.45 29.40 0.40 -24.95 16 14 O -0.35 -15.86 10.16 -51.47 -0.52 -16.38 16 15 C 0.13 6.83 5.29 71.98 0.38 7.21 16 16 C 0.01 0.37 1.62 -52.93 -0.09 0.29 16 17 C -0.50 -27.73 8.78 25.60 0.22 -27.50 16 18 H 0.06 3.23 7.82 -2.92 -0.02 3.21 16 19 C 0.02 1.18 5.38 84.65 0.46 1.63 16 20 N -0.91 -52.96 12.88 21.45 0.28 -52.68 16 21 Si 0.96 42.96 29.54 68.60 2.03 44.98 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 C -0.18 -7.75 9.96 30.62 0.30 -7.45 16 26 C -0.15 -7.14 9.37 30.62 0.29 -6.85 16 27 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 1.44 8.12 -2.39 -0.02 1.42 16 29 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.43 5.22 8.83 -92.72 -0.82 4.40 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 2.17 4.45 -2.39 -0.01 2.16 16 33 H 0.07 1.09 7.75 -2.38 -0.02 1.08 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 1.17 8.14 -2.38 -0.02 1.16 16 36 H 0.03 0.85 6.56 -2.39 -0.02 0.83 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.04 2.06 8.13 -2.38 -0.02 2.04 16 43 H 0.03 1.73 8.08 -2.39 -0.02 1.71 16 44 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 45 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 46 H 0.09 3.77 8.14 -2.39 -0.02 3.75 16 47 H 0.07 3.68 8.14 -2.38 -0.02 3.66 16 48 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -76.47 392.57 5.53 -70.94 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.11 Total: 24.22 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 5.07 Total: -7.51 kcal Atomic # 7 Polarization: -68.12 SS G_CDS: -1.80 Total: -69.92 kcal Atomic # 8 Polarization: -62.83 SS G_CDS: 0.12 Total: -62.71 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -76.47 5.53 -70.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850020225.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.088 kcal (2) G-P(sol) polarization free energy of solvation -76.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds