Wall clock time and date at job start Fri Apr 10 2020 22:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21281 * 119.99548 * 2 1 4 4 N 1.34772 * 120.00251 * 180.27416 * 2 1 3 5 5 C 1.46498 * 120.00175 * 179.72548 * 4 2 1 6 6 H 1.09006 * 109.46987 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47190 * 299.99812 * 5 4 2 8 8 C 1.53008 * 109.47039 * 295.00383 * 7 5 4 9 9 C 1.52997 * 109.47039 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47300 * 64.99789 * 9 8 7 11 11 C 1.53001 * 109.46962 * 184.99878 * 9 8 7 12 12 C 1.50694 * 109.47085 * 60.00066 * 5 4 2 13 13 O 1.20823 * 120.00391 * 339.99311 * 12 5 4 14 14 O 1.34229 * 120.00203 * 160.00493 * 12 5 4 15 15 C 1.45195 * 117.00482 * 179.97438 * 14 12 5 16 16 C 1.52997 * 109.47688 * 179.97438 * 15 14 12 17 17 C 1.50705 * 115.54844 * 65.10128 * 16 15 14 18 18 H 1.08001 * 120.00181 * 266.11294 * 17 16 15 19 19 C 1.37872 * 120.00073 * 86.11503 * 17 16 15 20 20 N 1.31522 * 119.99917 * 353.70097 * 19 17 16 21 21 Si 1.86800 * 120.00220 * 173.69939 * 19 17 16 22 22 H 1.48505 * 109.47023 * 89.99990 * 21 19 17 23 23 H 1.48502 * 109.47196 * 209.99732 * 21 19 17 24 24 H 1.48495 * 109.47233 * 329.99930 * 21 19 17 25 25 C 1.53001 * 117.50081 * 279.43709 * 16 15 14 26 26 C 1.52993 * 117.50382 * 210.77700 * 16 15 14 27 27 H 1.08996 * 109.47211 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47347 * 120.00350 * 1 2 3 29 29 H 1.09001 * 109.47310 * 240.00184 * 1 2 3 30 30 H 0.97010 * 119.99612 * 359.72173 * 4 2 1 31 31 H 1.08999 * 109.46913 * 54.99397 * 7 5 4 32 32 H 1.08999 * 109.47611 * 175.00246 * 7 5 4 33 33 H 1.09006 * 109.46817 * 299.99406 * 8 7 5 34 34 H 1.08999 * 109.47031 * 59.99508 * 8 7 5 35 35 H 1.09006 * 109.47141 * 304.99729 * 9 8 7 36 36 H 1.09002 * 109.46883 * 299.99805 * 10 9 8 37 37 H 1.08998 * 109.47309 * 59.99640 * 10 9 8 38 38 H 1.09006 * 109.47065 * 180.02562 * 10 9 8 39 39 H 1.08996 * 109.47474 * 60.00104 * 11 9 8 40 40 H 1.09006 * 109.47023 * 179.97438 * 11 9 8 41 41 H 1.08995 * 109.47044 * 299.99384 * 11 9 8 42 42 H 1.09003 * 109.46626 * 299.99625 * 15 14 12 43 43 H 1.09000 * 109.47575 * 59.99411 * 15 14 12 44 44 H 0.96998 * 119.99932 * 180.02562 * 20 19 17 45 45 H 1.09003 * 117.49492 * 359.97438 * 25 16 15 46 46 H 1.08994 * 117.50215 * 145.01326 * 25 16 15 47 47 H 1.09005 * 117.49967 * 214.97968 * 26 16 15 48 48 H 1.09001 * 117.49758 * 359.96846 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0056 5 6 3.6459 -1.1671 -0.0117 6 1 4.0092 -2.1948 -0.0152 7 6 4.1507 -0.4429 -1.2613 8 6 3.7407 -1.2301 -2.5076 9 6 4.2460 -0.5063 -3.7572 10 6 5.7760 -0.5068 -3.7632 11 6 3.7308 -1.2246 -5.0060 12 6 4.1533 -0.4596 1.2184 13 8 3.4302 0.2976 1.8213 14 8 5.4087 -0.6705 1.6441 15 6 5.8298 0.0450 2.8352 16 6 7.2785 -0.3207 3.1645 17 6 8.3047 0.1108 2.1487 18 1 8.6155 -0.5716 1.3715 19 6 8.8470 1.3769 2.2117 20 7 8.3812 2.2494 3.0786 21 14 10.2431 1.8531 1.0656 22 1 9.6834 2.4245 -0.1856 23 1 11.1052 2.8640 1.7290 24 1 11.0505 0.6495 0.7422 25 6 7.5245 -1.6391 3.9009 26 6 7.6933 -0.3078 4.6371 27 1 -0.3633 1.0276 0.0005 28 1 -0.3634 -0.5139 -0.8899 29 1 -0.3634 -0.5138 0.8900 30 1 1.6958 -2.0072 -0.0055 31 1 3.7158 0.5557 -1.3031 32 1 5.2372 -0.3647 -1.2220 33 1 4.1756 -2.2288 -2.4658 34 1 2.6542 -1.3083 -2.5468 35 1 3.8831 0.5216 -3.7534 36 1 6.1430 0.0049 -2.8735 37 1 6.1390 -1.5346 -3.7669 38 1 6.1360 0.0093 -4.6533 39 1 2.6409 -1.2242 -5.0018 40 1 4.0905 -0.7086 -5.8963 41 1 4.0938 -2.2523 -5.0098 42 1 5.7567 1.1182 2.6592 43 1 5.1869 -0.2308 3.6712 44 1 8.7624 3.1402 3.1226 45 1 6.6541 -2.2458 4.1511 46 1 8.4286 -2.1941 3.6509 47 1 8.7085 0.0126 4.8713 48 1 6.9341 -0.0383 5.3714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850020226.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:20 Heat of formation + Delta-G solvation = -119.113075 kcal Electronic energy + Delta-G solvation = -27203.535574 eV Core-core repulsion = 23451.909334 eV Total energy + Delta-G solvation = -3751.626240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47049 -38.85735 -37.05627 -36.63969 -35.14641 -34.61200 -31.92834 -31.74943 -29.36405 -27.59759 -27.17857 -26.08567 -25.08329 -22.59048 -21.42801 -21.07683 -19.92629 -19.48681 -19.21352 -17.58521 -16.71618 -16.47311 -15.97751 -15.44019 -15.23524 -15.10427 -14.71503 -14.54305 -14.12621 -13.92039 -13.64990 -13.52229 -13.01763 -12.86157 -12.50877 -12.42178 -12.24334 -12.13109 -12.07481 -11.66715 -11.64421 -11.54428 -11.19318 -10.95542 -10.85018 -10.69365 -10.63689 -10.56158 -10.49507 -10.26515 -10.06103 -9.77077 -9.59245 -9.47368 -8.93503 -8.79078 -8.43060 -8.17309 -6.03450 -4.08736 2.70582 2.87189 3.10365 3.31194 3.38126 3.40986 3.60177 4.41885 4.66734 4.79950 4.85599 4.89194 5.05668 5.15814 5.19516 5.25311 5.27232 5.32132 5.40659 5.47030 5.57805 5.66257 5.68416 5.76598 5.80585 5.83149 5.88912 6.02556 6.07373 6.15050 6.22430 6.26762 6.34942 6.36947 6.47332 6.49447 6.58048 6.69729 6.76054 7.05219 7.34454 7.39278 7.51275 7.53408 7.89428 8.36453 8.41498 8.58597 8.92515 9.57008 11.06006 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.011098 B = 0.004587 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.373843 B = 6103.143949 C = 7658.067701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.511 3.489 3 O -0.509 6.509 4 N -0.725 5.725 5 C 0.163 3.837 6 H 0.117 0.883 7 C -0.136 4.136 8 C -0.105 4.105 9 C -0.097 4.097 10 C -0.152 4.152 11 C -0.145 4.145 12 C 0.438 3.562 13 O -0.495 6.495 14 O -0.340 6.340 15 C 0.119 3.881 16 C 0.039 3.961 17 C -0.489 4.489 18 H 0.063 0.937 19 C 0.069 3.931 20 N -0.881 5.881 21 Si 0.891 3.109 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.272 1.272 25 C -0.206 4.206 26 C -0.145 4.145 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.403 0.597 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.035 0.965 44 H 0.261 0.739 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.493 -10.106 -11.005 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.298 3.702 3 O -0.382 6.382 4 N -0.380 5.380 5 C 0.056 3.944 6 H 0.135 0.865 7 C -0.174 4.174 8 C -0.142 4.142 9 C -0.116 4.116 10 C -0.210 4.210 11 C -0.202 4.202 12 C 0.278 3.722 13 O -0.382 6.382 14 O -0.255 6.255 15 C 0.046 3.954 16 C 0.038 3.962 17 C -0.526 4.526 18 H 0.081 0.919 19 C -0.134 4.134 20 N -0.517 5.517 21 Si 0.718 3.282 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.243 4.243 26 C -0.183 4.183 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.237 0.763 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.099 0.901 47 H 0.106 0.894 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.204 -8.864 -10.707 19.172 hybrid contribution 0.442 0.068 -0.265 0.520 sum -12.762 -8.796 -10.972 18.990 Atomic orbital electron populations 1.21884 0.92079 1.05340 1.03719 1.20664 0.90275 0.83651 0.75611 1.90757 1.70197 1.31150 1.46079 1.45765 1.05414 1.09173 1.77600 1.20406 0.80835 1.01207 0.91910 0.86520 1.22032 1.02901 1.01196 0.91299 1.21568 1.00518 0.98825 0.93294 1.21104 0.96255 0.99822 0.94414 1.21921 0.94935 1.01958 1.02156 1.21828 1.00558 1.00422 0.97418 1.23750 0.81530 0.81008 0.85956 1.90650 1.57677 1.33750 1.56140 1.86487 1.28777 1.64699 1.45537 1.22849 0.95008 0.96254 0.81337 1.18775 0.90422 0.94726 0.92229 1.20356 1.21350 0.98549 1.12392 0.91892 1.25009 0.96696 0.96267 0.95430 1.70005 1.41010 1.05066 1.35634 0.86613 0.82311 0.78337 0.80912 1.20569 1.21186 1.19722 1.23003 1.01143 0.91505 1.08626 1.22527 1.01351 0.99040 0.95352 0.89151 0.89802 0.89695 0.76259 0.89078 0.89271 0.91844 0.92147 0.91291 0.91760 0.92627 0.93047 0.93029 0.92907 0.92767 0.90760 0.94675 0.92920 0.91670 0.90076 0.89418 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 10.32 36.01 0.37 -1.13 16 2 C 0.51 7.05 6.70 -10.99 -0.07 6.98 16 3 O -0.51 -9.86 12.95 -17.93 -0.23 -10.09 16 4 N -0.72 -8.24 4.65 -54.94 -0.26 -8.50 16 5 C 0.16 2.29 3.12 -69.09 -0.22 2.08 16 6 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 7 C -0.14 -1.91 4.30 -26.73 -0.11 -2.03 16 8 C -0.10 -1.08 4.57 -26.73 -0.12 -1.21 16 9 C -0.10 -1.02 2.92 -90.62 -0.26 -1.28 16 10 C -0.15 -1.71 8.95 37.16 0.33 -1.37 16 11 C -0.14 -1.24 9.19 37.16 0.34 -0.90 16 12 C 0.44 8.76 6.95 36.00 0.25 9.01 16 13 O -0.50 -11.44 13.43 -26.52 -0.36 -11.79 16 14 O -0.34 -7.61 10.16 -39.25 -0.40 -8.01 16 15 C 0.12 2.93 5.29 37.16 0.20 3.13 16 16 C 0.04 0.99 1.62 -155.66 -0.25 0.73 16 17 C -0.49 -13.45 8.77 -34.44 -0.30 -13.76 16 18 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 19 C 0.07 1.92 5.38 -17.82 -0.10 1.82 16 20 N -0.88 -25.40 12.88 55.43 0.71 -24.69 16 21 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 C -0.21 -4.51 9.96 -26.70 -0.27 -4.78 16 26 C -0.15 -3.43 9.37 -26.70 -0.25 -3.68 16 27 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.40 2.85 8.83 -40.82 -0.36 2.49 16 31 H 0.09 1.54 6.04 -51.93 -0.31 1.23 16 32 H 0.09 1.38 6.56 -51.93 -0.34 1.04 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.57 7.75 -51.93 -0.40 0.17 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.83 6.56 -51.93 -0.34 0.49 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 2.07 8.13 -51.93 -0.42 1.65 16 43 H 0.03 0.82 8.08 -51.93 -0.42 0.40 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 47 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 48 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 392.56 15.07 5.92 5.92 Total: -1.00 -34.35 392.56 -8.59 -42.94 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -8.49 Total: 4.28 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -0.47 Total: -6.38 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.46 Total: -33.18 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.99 Total: -29.90 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.35 -8.59 -42.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850020226.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.174 kcal (2) G-P(sol) polarization free energy of solvation -34.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds