Wall clock time and date at job start Fri Apr 10 2020 22:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21281 * 119.99548 * 2 1 4 4 N 1.34772 * 120.00251 * 180.27416 * 2 1 3 5 5 C 1.46498 * 120.00175 * 179.72548 * 4 2 1 6 6 H 1.09006 * 109.46987 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47190 * 299.99812 * 5 4 2 8 8 C 1.53008 * 109.47039 * 295.00383 * 7 5 4 9 9 C 1.52997 * 109.47039 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47300 * 64.99789 * 9 8 7 11 11 C 1.53001 * 109.46962 * 184.99878 * 9 8 7 12 12 C 1.50694 * 109.47085 * 60.00066 * 5 4 2 13 13 O 1.20823 * 120.00391 * 339.99311 * 12 5 4 14 14 O 1.34229 * 120.00203 * 160.00493 * 12 5 4 15 15 C 1.45195 * 117.00482 * 179.97438 * 14 12 5 16 16 C 1.52997 * 109.47688 * 179.97438 * 15 14 12 17 17 C 1.50705 * 115.54844 * 65.10128 * 16 15 14 18 18 H 1.08001 * 120.00181 * 266.11294 * 17 16 15 19 19 C 1.37872 * 120.00073 * 86.11503 * 17 16 15 20 20 N 1.31522 * 119.99917 * 353.70097 * 19 17 16 21 21 Si 1.86800 * 120.00220 * 173.69939 * 19 17 16 22 22 H 1.48505 * 109.47023 * 89.99990 * 21 19 17 23 23 H 1.48502 * 109.47196 * 209.99732 * 21 19 17 24 24 H 1.48495 * 109.47233 * 329.99930 * 21 19 17 25 25 C 1.53001 * 117.50081 * 279.43709 * 16 15 14 26 26 C 1.52993 * 117.50382 * 210.77700 * 16 15 14 27 27 H 1.08996 * 109.47211 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47347 * 120.00350 * 1 2 3 29 29 H 1.09001 * 109.47310 * 240.00184 * 1 2 3 30 30 H 0.97010 * 119.99612 * 359.72173 * 4 2 1 31 31 H 1.08999 * 109.46913 * 54.99397 * 7 5 4 32 32 H 1.08999 * 109.47611 * 175.00246 * 7 5 4 33 33 H 1.09006 * 109.46817 * 299.99406 * 8 7 5 34 34 H 1.08999 * 109.47031 * 59.99508 * 8 7 5 35 35 H 1.09006 * 109.47141 * 304.99729 * 9 8 7 36 36 H 1.09002 * 109.46883 * 299.99805 * 10 9 8 37 37 H 1.08998 * 109.47309 * 59.99640 * 10 9 8 38 38 H 1.09006 * 109.47065 * 180.02562 * 10 9 8 39 39 H 1.08996 * 109.47474 * 60.00104 * 11 9 8 40 40 H 1.09006 * 109.47023 * 179.97438 * 11 9 8 41 41 H 1.08995 * 109.47044 * 299.99384 * 11 9 8 42 42 H 1.09003 * 109.46626 * 299.99625 * 15 14 12 43 43 H 1.09000 * 109.47575 * 59.99411 * 15 14 12 44 44 H 0.96998 * 119.99932 * 180.02562 * 20 19 17 45 45 H 1.09003 * 117.49492 * 359.97438 * 25 16 15 46 46 H 1.08994 * 117.50215 * 145.01326 * 25 16 15 47 47 H 1.09005 * 117.49967 * 214.97968 * 26 16 15 48 48 H 1.09001 * 117.49758 * 359.96846 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0056 5 6 3.6459 -1.1671 -0.0117 6 1 4.0092 -2.1948 -0.0152 7 6 4.1507 -0.4429 -1.2613 8 6 3.7407 -1.2301 -2.5076 9 6 4.2460 -0.5063 -3.7572 10 6 5.7760 -0.5068 -3.7632 11 6 3.7308 -1.2246 -5.0060 12 6 4.1533 -0.4596 1.2184 13 8 3.4302 0.2976 1.8213 14 8 5.4087 -0.6705 1.6441 15 6 5.8298 0.0450 2.8352 16 6 7.2785 -0.3207 3.1645 17 6 8.3047 0.1108 2.1487 18 1 8.6155 -0.5716 1.3715 19 6 8.8470 1.3769 2.2117 20 7 8.3812 2.2494 3.0786 21 14 10.2431 1.8531 1.0656 22 1 9.6834 2.4245 -0.1856 23 1 11.1052 2.8640 1.7290 24 1 11.0505 0.6495 0.7422 25 6 7.5245 -1.6391 3.9009 26 6 7.6933 -0.3078 4.6371 27 1 -0.3633 1.0276 0.0005 28 1 -0.3634 -0.5139 -0.8899 29 1 -0.3634 -0.5138 0.8900 30 1 1.6958 -2.0072 -0.0055 31 1 3.7158 0.5557 -1.3031 32 1 5.2372 -0.3647 -1.2220 33 1 4.1756 -2.2288 -2.4658 34 1 2.6542 -1.3083 -2.5468 35 1 3.8831 0.5216 -3.7534 36 1 6.1430 0.0049 -2.8735 37 1 6.1390 -1.5346 -3.7669 38 1 6.1360 0.0093 -4.6533 39 1 2.6409 -1.2242 -5.0018 40 1 4.0905 -0.7086 -5.8963 41 1 4.0938 -2.2523 -5.0098 42 1 5.7567 1.1182 2.6592 43 1 5.1869 -0.2308 3.6712 44 1 8.7624 3.1402 3.1226 45 1 6.6541 -2.2458 4.1511 46 1 8.4286 -2.1941 3.6509 47 1 8.7085 0.0126 4.8713 48 1 6.9341 -0.0383 5.3714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850020226.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:20 Heat of formation + Delta-G solvation = -139.523268 kcal Electronic energy + Delta-G solvation = -27204.420627 eV Core-core repulsion = 23451.909334 eV Total energy + Delta-G solvation = -3752.511293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.86764 -40.29887 -38.53411 -37.95267 -36.88960 -35.78173 -34.03918 -32.78368 -30.19884 -29.18128 -27.98726 -27.71674 -26.91970 -23.70254 -23.03337 -22.58392 -21.20999 -20.92805 -20.69850 -18.86492 -18.36296 -17.92409 -17.51812 -17.18675 -16.58384 -16.43438 -16.19545 -15.82871 -15.55081 -15.07877 -14.94034 -14.68983 -14.47591 -14.05005 -13.82265 -13.67853 -13.55850 -13.23548 -13.11054 -12.98704 -12.93308 -12.89379 -12.86217 -12.54989 -12.38983 -12.18197 -12.09957 -11.83898 -11.65672 -11.56972 -11.48130 -11.43711 -11.33645 -10.79259 -10.63512 -10.52771 -10.23694 -10.01125 -8.15764 -6.26885 1.25477 1.38944 1.39969 1.50446 1.52308 1.98514 2.35539 2.40436 3.13526 3.39111 3.65775 3.77559 3.88771 4.01912 4.06358 4.11688 4.13360 4.28618 4.35709 4.44493 4.47770 4.54487 4.63917 4.64491 4.71091 4.81356 4.83098 4.85356 4.90324 4.94999 5.01040 5.06937 5.09884 5.16206 5.19092 5.25693 5.38384 5.39934 5.45344 5.52027 5.55536 5.57190 5.71921 5.73724 6.33689 6.63614 6.78845 6.87418 7.42002 7.44089 8.93346 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.011098 B = 0.004587 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.373843 B = 6103.143949 C = 7658.067701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.500 3.500 3 O -0.575 6.575 4 N -0.705 5.705 5 C 0.171 3.829 6 H 0.160 0.840 7 C -0.130 4.130 8 C -0.093 4.093 9 C -0.099 4.099 10 C -0.153 4.153 11 C -0.139 4.139 12 C 0.428 3.572 13 O -0.530 6.530 14 O -0.346 6.346 15 C 0.134 3.866 16 C 0.004 3.996 17 C -0.500 4.500 18 H 0.058 0.942 19 C 0.021 3.979 20 N -0.912 5.912 21 Si 0.951 3.049 22 H -0.282 1.282 23 H -0.283 1.283 24 H -0.259 1.259 25 C -0.171 4.171 26 C -0.149 4.149 27 H 0.079 0.921 28 H 0.123 0.877 29 H 0.105 0.895 30 H 0.429 0.571 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.036 0.964 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.027 0.973 43 H 0.043 0.957 44 H 0.260 0.740 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.070 0.930 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.638 -13.301 -12.563 23.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.289 3.711 3 O -0.453 6.453 4 N -0.362 5.362 5 C 0.064 3.936 6 H 0.177 0.823 7 C -0.168 4.168 8 C -0.130 4.130 9 C -0.118 4.118 10 C -0.210 4.210 11 C -0.196 4.196 12 C 0.270 3.730 13 O -0.419 6.419 14 O -0.262 6.262 15 C 0.059 3.941 16 C 0.003 3.997 17 C -0.538 4.538 18 H 0.077 0.923 19 C -0.179 4.179 20 N -0.550 5.550 21 Si 0.776 3.224 22 H -0.208 1.208 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.208 4.208 26 C -0.186 4.186 27 H 0.098 0.902 28 H 0.141 0.859 29 H 0.124 0.876 30 H 0.268 0.732 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.045 0.955 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.110 0.890 46 H 0.108 0.892 47 H 0.089 0.911 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.378 -12.133 -12.277 22.465 hybrid contribution 0.744 1.073 0.217 1.324 sum -13.634 -11.060 -12.060 21.299 Atomic orbital electron populations 1.21888 0.87894 1.05636 1.06525 1.21673 0.92357 0.83089 0.73933 1.90749 1.71850 1.33592 1.49075 1.45651 1.04214 1.10046 1.76260 1.20557 0.82393 1.02316 0.88379 0.82294 1.21940 1.01286 1.00276 0.93312 1.21525 1.01625 0.98986 0.90868 1.21107 0.95604 0.99276 0.95780 1.21925 0.95735 1.02360 1.01007 1.21770 1.01158 1.00670 0.96008 1.25130 0.80244 0.80644 0.86981 1.90633 1.58269 1.35379 1.57597 1.86499 1.30529 1.64320 1.44823 1.22405 0.95341 0.93731 0.82574 1.18860 0.90081 0.98042 0.92699 1.20637 1.21764 0.98638 1.12776 0.92342 1.25756 0.98965 0.96314 0.96913 1.70126 1.42280 1.05261 1.37363 0.85669 0.79594 0.78365 0.78782 1.20780 1.20808 1.18341 1.23014 1.02324 0.90344 1.05157 1.22466 1.00633 1.00744 0.94791 0.90244 0.85906 0.87638 0.73190 0.92606 0.91456 0.89511 0.90466 0.93213 0.94510 0.91392 0.92637 0.92011 0.92759 0.91571 0.95488 0.93849 0.93142 0.88963 0.89248 0.91120 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 10.32 71.24 0.74 -1.68 16 2 C 0.50 13.35 6.70 87.66 0.59 13.94 16 3 O -0.57 -23.18 12.95 19.42 0.25 -22.93 16 4 N -0.71 -14.42 4.65 -446.11 -2.07 -16.49 16 5 C 0.17 4.57 3.12 44.24 0.14 4.71 16 6 H 0.16 2.93 8.14 -2.38 -0.02 2.91 16 7 C -0.13 -3.65 4.30 30.60 0.13 -3.52 16 8 C -0.09 -1.72 4.57 30.60 0.14 -1.58 16 9 C -0.10 -1.95 2.92 -10.79 -0.03 -1.99 16 10 C -0.15 -3.35 8.95 71.98 0.64 -2.71 16 11 C -0.14 -1.99 9.19 71.98 0.66 -1.33 16 12 C 0.43 17.42 6.95 71.23 0.49 17.91 16 13 O -0.53 -25.40 13.43 29.41 0.40 -25.00 16 14 O -0.35 -15.80 10.16 -51.40 -0.52 -16.32 16 15 C 0.13 6.81 5.29 71.98 0.38 7.19 16 16 C 0.00 0.19 1.62 -52.93 -0.09 0.10 16 17 C -0.50 -28.02 8.77 25.60 0.22 -27.80 16 18 H 0.06 3.23 7.82 -2.91 -0.02 3.21 16 19 C 0.02 1.16 5.38 84.65 0.46 1.62 16 20 N -0.91 -54.47 12.88 21.45 0.28 -54.19 16 21 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 22 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 23 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 25 C -0.17 -7.26 9.96 30.62 0.30 -6.95 16 26 C -0.15 -7.06 9.37 30.61 0.29 -6.77 16 27 H 0.08 1.41 8.12 -2.39 -0.02 1.39 16 28 H 0.12 0.90 8.14 -2.39 -0.02 0.89 16 29 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.43 4.30 8.83 -92.70 -0.82 3.48 16 31 H 0.06 2.00 6.04 -2.39 -0.01 1.98 16 32 H 0.07 2.17 6.56 -2.39 -0.02 2.15 16 33 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.08 1.20 7.75 -2.39 -0.02 1.18 16 35 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.04 0.99 6.56 -2.39 -0.02 0.97 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.03 1.59 8.13 -2.39 -0.02 1.57 16 43 H 0.04 2.08 8.08 -2.39 -0.02 2.06 16 44 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 45 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 46 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 47 H 0.07 3.55 8.14 -2.38 -0.02 3.54 16 48 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -80.35 392.56 5.53 -74.81 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.11 Total: 22.33 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 5.07 Total: -8.85 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: -1.80 Total: -70.68 kcal Atomic # 8 Polarization: -64.38 SS G_CDS: 0.12 Total: -64.26 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -80.35 5.53 -74.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850020226.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.713 kcal (2) G-P(sol) polarization free energy of solvation -80.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds