Wall clock time and date at job start Fri Apr 10 2020 22:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46989 * 2 1 4 4 C 1.52996 * 109.47224 * 240.00310 * 2 1 3 5 5 O 1.42896 * 109.47293 * 120.00248 * 2 1 3 6 6 C 1.42900 * 114.00150 * 59.99858 * 5 2 1 7 7 H 1.09006 * 115.54658 * 4.33393 * 6 5 2 8 8 C 1.53071 * 117.51602 * 218.61124 * 6 5 2 9 9 C 1.52993 * 117.50065 * 150.00092 * 6 5 2 10 10 H 1.09002 * 117.50110 * 0.02562 * 9 6 5 11 11 C 1.50699 * 117.50348 * 215.00654 * 9 6 5 12 12 O 1.20833 * 119.99542 * 0.08547 * 11 9 6 13 13 O 1.34229 * 120.00728 * 180.08473 * 11 9 6 14 14 C 1.45196 * 117.00202 * 179.97438 * 13 11 9 15 15 C 1.53038 * 109.45854 * 210.00108 * 14 13 11 16 16 C 1.53190 * 109.31509 * 178.61407 * 15 14 13 17 17 N 1.46931 * 108.77287 * 54.63535 * 16 15 14 18 18 C 1.36931 * 120.62864 * 126.37171 * 17 16 15 19 19 H 1.08000 * 120.00551 * 332.44726 * 18 17 16 20 20 C 1.38818 * 119.99918 * 152.44889 * 18 17 16 21 21 N 1.31615 * 119.99803 * 342.76958 * 20 18 17 22 22 Si 1.86800 * 120.00095 * 162.49548 * 20 18 17 23 23 H 1.48501 * 109.47248 * 59.99693 * 22 20 18 24 24 H 1.48498 * 109.47189 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47026 * 299.99769 * 22 20 18 26 26 C 1.46922 * 118.73891 * 306.64112 * 17 16 15 27 27 C 1.52767 * 109.00727 * 53.31292 * 26 17 16 28 28 H 1.08998 * 109.47050 * 299.99607 * 1 2 3 29 29 H 1.08998 * 109.47105 * 59.99571 * 1 2 3 30 30 H 1.08997 * 109.46607 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47023 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47046 * 300.00158 * 3 2 1 33 33 H 1.08998 * 109.46904 * 60.00303 * 3 2 1 34 34 H 1.09000 * 109.47078 * 300.00077 * 4 2 1 35 35 H 1.09001 * 109.47232 * 59.99583 * 4 2 1 36 36 H 1.08998 * 109.47269 * 179.97438 * 4 2 1 37 37 H 1.08998 * 117.51317 * 145.04670 * 8 6 5 38 38 H 1.09009 * 117.49238 * 0.02562 * 8 6 5 39 39 H 1.08996 * 109.45817 * 329.97111 * 14 13 11 40 40 H 1.09001 * 109.50206 * 58.66280 * 15 14 13 41 41 H 1.09006 * 109.50056 * 298.56988 * 15 14 13 42 42 H 1.08999 * 109.58869 * 294.84761 * 16 15 14 43 43 H 1.09000 * 109.59016 * 174.42106 * 16 15 14 44 44 H 0.97001 * 119.99818 * 180.02562 * 21 20 18 45 45 H 1.08994 * 109.58873 * 173.14399 * 26 17 16 46 46 H 1.08999 * 109.59031 * 293.57800 * 26 17 16 47 47 H 1.08995 * 109.56595 * 185.55346 * 27 26 17 48 48 H 1.09001 * 109.35990 * 65.49247 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0064 -0.6737 1.1667 6 6 1.5848 -2.0355 1.2644 7 1 1.0201 -2.4151 0.4128 8 6 1.2109 -2.5622 2.6522 9 6 2.5136 -3.0125 1.9880 10 1 3.4461 -2.6163 2.3900 11 6 2.5778 -4.4258 1.4690 12 8 1.9117 -4.7495 0.5142 13 8 3.3749 -5.3250 2.0671 14 6 3.3859 -6.6673 1.5137 15 6 3.6775 -7.6756 2.6275 16 6 3.6541 -9.0929 2.0468 17 7 4.5897 -9.1560 0.9156 18 6 5.5689 -10.1122 0.8727 19 1 5.9622 -10.5241 1.7903 20 6 6.0562 -10.5522 -0.3504 21 7 5.3728 -10.3235 -1.4518 22 14 7.6854 -11.4622 -0.4341 23 1 7.6050 -12.6979 0.3855 24 1 7.9793 -11.8225 -1.8444 25 1 8.7670 -10.5900 0.0901 26 6 4.4585 -8.1699 -0.1655 27 6 4.4694 -6.7662 0.4373 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1301 -0.7208 -1.2495 37 1 0.4003 -3.2883 2.7136 38 1 1.2862 -1.8695 3.4905 39 1 2.4139 -6.8858 1.0715 40 1 2.9186 -7.5885 3.4050 41 1 4.6602 -7.4731 3.0535 42 1 2.6476 -9.3301 1.7022 43 1 3.9580 -9.8067 2.8125 44 1 5.7131 -10.6313 -2.3064 45 1 5.2928 -8.2746 -0.8589 46 1 3.5189 -8.3301 -0.6942 47 1 4.2739 -6.0319 -0.3440 48 1 5.4446 -6.5723 0.8839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850896541.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:23 Heat of formation + Delta-G solvation = -92.255037 kcal Electronic energy + Delta-G solvation = -26464.875978 eV Core-core repulsion = 22714.414390 eV Total energy + Delta-G solvation = -3750.461588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.60046 -39.43138 -37.65710 -36.25747 -35.56401 -32.90914 -32.66281 -30.32645 -29.72708 -27.84166 -27.66595 -25.89401 -24.48027 -22.65108 -22.26346 -21.94228 -20.32141 -20.12275 -19.28348 -17.85262 -17.05733 -16.75667 -16.15575 -15.88045 -15.33456 -15.18430 -14.84945 -14.16023 -13.93324 -13.62842 -13.50119 -13.40060 -13.11897 -12.99777 -12.69872 -12.62143 -12.53048 -12.38415 -12.24042 -12.14100 -12.05063 -11.54784 -11.29528 -11.21936 -11.15190 -11.00990 -10.73371 -10.70103 -10.67253 -10.33559 -10.30069 -10.21773 -9.90987 -9.72824 -9.47114 -9.40931 -8.48721 -6.74096 -5.81743 -3.24409 2.19121 2.60418 3.31788 3.38228 3.43835 3.45204 3.59702 4.37316 4.46509 4.47631 4.54890 4.60315 4.65918 4.85541 4.92429 5.11104 5.21831 5.24066 5.25104 5.37054 5.38558 5.41891 5.42835 5.51078 5.51949 5.53077 5.58728 5.69531 5.73287 5.75664 5.91975 5.97829 6.01681 6.20362 6.28729 6.45817 6.51513 6.59442 6.68760 6.86316 6.94265 6.94668 7.30646 7.60277 7.77012 7.97837 8.41257 9.17142 9.80252 10.36551 11.27392 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.025336 B = 0.002575 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.882831 B =10872.044934 C =11463.910904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.107 3.893 3 C -0.138 4.138 4 C -0.182 4.182 5 O -0.342 6.342 6 C 0.055 3.945 7 H 0.129 0.871 8 C -0.153 4.153 9 C -0.170 4.170 10 H 0.138 0.862 11 C 0.491 3.509 12 O -0.511 6.511 13 O -0.352 6.352 14 C 0.098 3.902 15 C -0.128 4.128 16 C 0.148 3.852 17 N -0.592 5.592 18 C -0.256 4.256 19 H 0.067 0.933 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.905 3.095 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.175 3.825 27 C -0.153 4.153 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.021 0.979 43 H 0.064 0.936 44 H 0.255 0.745 45 H 0.094 0.906 46 H 0.022 0.978 47 H 0.053 0.947 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.338 21.579 5.214 24.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.068 3.932 3 C -0.195 4.195 4 C -0.239 4.239 5 O -0.260 6.260 6 C -0.004 4.004 7 H 0.146 0.854 8 C -0.190 4.190 9 C -0.189 4.189 10 H 0.156 0.844 11 C 0.333 3.667 12 O -0.400 6.400 13 O -0.268 6.268 14 C 0.044 3.956 15 C -0.167 4.167 16 C 0.021 3.979 17 N -0.315 5.315 18 C -0.386 4.386 19 H 0.085 0.915 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.734 3.266 23 H -0.208 1.208 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.049 3.951 27 C -0.193 4.193 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.039 0.961 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.112 0.888 46 H 0.040 0.960 47 H 0.072 0.928 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.353 21.455 4.875 23.907 hybrid contribution 0.765 -0.661 -0.369 1.077 sum -8.588 20.793 4.506 22.944 Atomic orbital electron populations 1.22475 0.95235 1.02923 1.02862 1.21613 0.93444 0.93022 0.85106 1.21768 1.02136 0.92985 1.02577 1.22501 1.02539 1.01360 0.97489 1.87898 1.73526 1.21344 1.43262 1.22618 0.98487 0.82461 0.96805 0.85413 1.23519 0.95594 1.02507 0.97382 1.22221 0.99169 0.90212 1.07343 0.84370 1.22348 0.76443 0.87040 0.80820 1.90647 1.42548 1.80139 1.26658 1.86518 1.60389 1.22781 1.57119 1.22963 1.00692 0.76504 0.95447 1.22236 1.01974 0.96095 0.96425 1.20893 0.93452 0.92147 0.91368 1.44105 1.33858 1.32652 1.20887 1.19149 1.11739 1.15505 0.92161 0.91500 1.25069 0.99350 0.98970 0.96214 1.70020 1.36972 1.49538 0.98118 0.86339 0.83984 0.79606 0.76658 1.20807 1.21608 1.20967 1.20676 1.01348 0.82716 0.90386 1.22599 0.97919 1.01783 0.96995 0.91622 0.91371 0.91915 0.91653 0.90893 0.91748 0.91626 0.91338 0.91511 0.87326 0.86695 0.90345 0.92250 0.91097 0.96082 0.91754 0.93460 0.88814 0.96032 0.92782 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 8.38 37.16 0.31 -0.97 16 2 C 0.11 0.91 1.11 -90.62 -0.10 0.81 16 3 C -0.14 -0.94 8.84 37.16 0.33 -0.62 16 4 C -0.18 -1.61 8.38 37.16 0.31 -1.30 16 5 O -0.34 -3.65 10.24 -35.23 -0.36 -4.01 16 6 C 0.05 0.60 4.47 -26.70 -0.12 0.48 16 7 H 0.13 1.45 5.16 -51.93 -0.27 1.18 16 8 C -0.15 -1.47 10.19 -26.70 -0.27 -1.74 16 9 C -0.17 -2.06 6.24 -91.78 -0.57 -2.64 16 10 H 0.14 1.56 8.14 -51.93 -0.42 1.13 16 11 C 0.49 7.83 7.71 36.01 0.28 8.10 16 12 O -0.51 -9.35 15.48 -18.76 -0.29 -9.64 16 13 O -0.35 -6.09 9.88 -39.26 -0.39 -6.48 16 14 C 0.10 1.85 2.42 -26.69 -0.06 1.79 16 15 C -0.13 -2.32 5.74 -26.61 -0.15 -2.48 16 16 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16 17 N -0.59 -15.03 3.00 -172.58 -0.52 -15.55 16 18 C -0.26 -7.04 9.58 -15.06 -0.14 -7.18 16 19 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16 20 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 21 N -0.90 -26.36 11.19 55.49 0.62 -25.74 16 22 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.17 4.31 5.28 -3.93 -0.02 4.29 16 27 C -0.15 -3.20 5.70 -26.83 -0.15 -3.35 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.48 6.71 -51.93 -0.35 0.14 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.66 6.53 -51.93 -0.34 0.32 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.11 0.92 8.14 -51.92 -0.42 0.50 16 39 H 0.08 1.57 7.16 -51.93 -0.37 1.20 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 44 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.09 2.55 6.04 -51.93 -0.31 2.24 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 382.18 15.07 5.76 5.76 Total: -1.00 -30.99 382.18 -9.05 -40.04 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -8.37 Total: 0.66 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -0.48 Total: -1.72 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.10 Total: -41.29 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -1.04 Total: -20.13 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.99 -9.05 -40.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850896541.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.213 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds