Wall clock time and date at job start Fri Apr 10 2020 22:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46989 * 2 1 4 4 C 1.52996 * 109.47224 * 240.00310 * 2 1 3 5 5 O 1.42896 * 109.47293 * 120.00248 * 2 1 3 6 6 C 1.42900 * 114.00150 * 59.99858 * 5 2 1 7 7 H 1.09006 * 115.54658 * 4.33393 * 6 5 2 8 8 C 1.53071 * 117.51602 * 218.61124 * 6 5 2 9 9 C 1.52993 * 117.50065 * 150.00092 * 6 5 2 10 10 H 1.09002 * 117.50110 * 0.02562 * 9 6 5 11 11 C 1.50699 * 117.50348 * 215.00654 * 9 6 5 12 12 O 1.20833 * 119.99542 * 0.08547 * 11 9 6 13 13 O 1.34229 * 120.00728 * 180.08473 * 11 9 6 14 14 C 1.45196 * 117.00202 * 179.97438 * 13 11 9 15 15 C 1.53038 * 109.45854 * 210.00108 * 14 13 11 16 16 C 1.53190 * 109.31509 * 178.61407 * 15 14 13 17 17 N 1.46931 * 108.77287 * 54.63535 * 16 15 14 18 18 C 1.36931 * 120.62864 * 126.37171 * 17 16 15 19 19 H 1.08000 * 120.00551 * 332.44726 * 18 17 16 20 20 C 1.38818 * 119.99918 * 152.44889 * 18 17 16 21 21 N 1.31615 * 119.99803 * 342.76958 * 20 18 17 22 22 Si 1.86800 * 120.00095 * 162.49548 * 20 18 17 23 23 H 1.48501 * 109.47248 * 59.99693 * 22 20 18 24 24 H 1.48498 * 109.47189 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47026 * 299.99769 * 22 20 18 26 26 C 1.46922 * 118.73891 * 306.64112 * 17 16 15 27 27 C 1.52767 * 109.00727 * 53.31292 * 26 17 16 28 28 H 1.08998 * 109.47050 * 299.99607 * 1 2 3 29 29 H 1.08998 * 109.47105 * 59.99571 * 1 2 3 30 30 H 1.08997 * 109.46607 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47023 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47046 * 300.00158 * 3 2 1 33 33 H 1.08998 * 109.46904 * 60.00303 * 3 2 1 34 34 H 1.09000 * 109.47078 * 300.00077 * 4 2 1 35 35 H 1.09001 * 109.47232 * 59.99583 * 4 2 1 36 36 H 1.08998 * 109.47269 * 179.97438 * 4 2 1 37 37 H 1.08998 * 117.51317 * 145.04670 * 8 6 5 38 38 H 1.09009 * 117.49238 * 0.02562 * 8 6 5 39 39 H 1.08996 * 109.45817 * 329.97111 * 14 13 11 40 40 H 1.09001 * 109.50206 * 58.66280 * 15 14 13 41 41 H 1.09006 * 109.50056 * 298.56988 * 15 14 13 42 42 H 1.08999 * 109.58869 * 294.84761 * 16 15 14 43 43 H 1.09000 * 109.59016 * 174.42106 * 16 15 14 44 44 H 0.97001 * 119.99818 * 180.02562 * 21 20 18 45 45 H 1.08994 * 109.58873 * 173.14399 * 26 17 16 46 46 H 1.08999 * 109.59031 * 293.57800 * 26 17 16 47 47 H 1.08995 * 109.56595 * 185.55346 * 27 26 17 48 48 H 1.09001 * 109.35990 * 65.49247 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0064 -0.6737 1.1667 6 6 1.5848 -2.0355 1.2644 7 1 1.0201 -2.4151 0.4128 8 6 1.2109 -2.5622 2.6522 9 6 2.5136 -3.0125 1.9880 10 1 3.4461 -2.6163 2.3900 11 6 2.5778 -4.4258 1.4690 12 8 1.9117 -4.7495 0.5142 13 8 3.3749 -5.3250 2.0671 14 6 3.3859 -6.6673 1.5137 15 6 3.6775 -7.6756 2.6275 16 6 3.6541 -9.0929 2.0468 17 7 4.5897 -9.1560 0.9156 18 6 5.5689 -10.1122 0.8727 19 1 5.9622 -10.5241 1.7903 20 6 6.0562 -10.5522 -0.3504 21 7 5.3728 -10.3235 -1.4518 22 14 7.6854 -11.4622 -0.4341 23 1 7.6050 -12.6979 0.3855 24 1 7.9793 -11.8225 -1.8444 25 1 8.7670 -10.5900 0.0901 26 6 4.4585 -8.1699 -0.1655 27 6 4.4694 -6.7662 0.4373 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1301 -0.7208 -1.2495 37 1 0.4003 -3.2883 2.7136 38 1 1.2862 -1.8695 3.4905 39 1 2.4139 -6.8858 1.0715 40 1 2.9186 -7.5885 3.4050 41 1 4.6602 -7.4731 3.0535 42 1 2.6476 -9.3301 1.7022 43 1 3.9580 -9.8067 2.8125 44 1 5.7131 -10.6313 -2.3064 45 1 5.2928 -8.2746 -0.8589 46 1 3.5189 -8.3301 -0.6942 47 1 4.2739 -6.0319 -0.3440 48 1 5.4446 -6.5723 0.8839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850896541.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:22 Heat of formation + Delta-G solvation = -108.571523 kcal Electronic energy + Delta-G solvation = -26465.583514 eV Core-core repulsion = 22714.414390 eV Total energy + Delta-G solvation = -3751.169124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.87034 -40.32471 -39.17572 -37.57453 -36.72679 -34.62046 -33.60765 -32.14570 -31.56290 -28.42509 -28.29859 -27.50999 -26.00959 -24.00235 -23.67382 -23.37677 -21.42723 -21.03538 -20.96749 -18.96778 -18.90496 -17.99086 -17.19896 -17.07193 -16.81699 -16.40915 -15.87301 -15.73670 -15.45571 -15.07180 -14.82091 -14.58321 -14.48389 -14.22936 -14.09369 -13.66001 -13.44673 -13.29154 -13.10680 -13.09031 -12.89494 -12.86850 -12.83359 -12.65675 -12.60066 -12.42783 -12.15950 -12.00787 -11.91178 -11.89110 -11.83186 -11.60341 -11.44138 -11.39045 -11.10490 -10.57010 -10.30082 -8.78924 -7.92110 -5.38037 0.97323 1.43135 1.47054 1.50134 1.56460 2.45067 2.49244 2.68471 3.24218 3.46502 3.54791 3.61909 3.74418 3.80401 3.83840 3.91658 3.91869 4.01179 4.09995 4.12150 4.32377 4.34731 4.53545 4.61233 4.65630 4.68722 4.73352 4.78023 4.79988 4.84324 4.89304 4.92105 4.92831 4.93937 4.98215 5.03502 5.16402 5.21823 5.31139 5.33731 5.36583 5.47411 5.59826 5.62960 6.19871 6.33803 6.65786 7.08164 7.77796 8.30658 9.15764 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.025336 B = 0.002575 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.882831 B =10872.044934 C =11463.910904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.099 3.901 3 C -0.135 4.135 4 C -0.181 4.181 5 O -0.351 6.351 6 C 0.056 3.944 7 H 0.120 0.880 8 C -0.128 4.128 9 C -0.184 4.184 10 H 0.149 0.851 11 C 0.488 3.512 12 O -0.539 6.539 13 O -0.349 6.349 14 C 0.104 3.896 15 C -0.114 4.114 16 C 0.143 3.857 17 N -0.611 5.611 18 C -0.266 4.266 19 H 0.074 0.926 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.971 3.029 23 H -0.272 1.272 24 H -0.295 1.295 25 H -0.278 1.278 26 C 0.185 3.815 27 C -0.140 4.140 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.115 0.885 38 H 0.138 0.862 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.019 0.981 43 H 0.075 0.925 44 H 0.251 0.749 45 H 0.062 0.938 46 H -0.003 1.003 47 H 0.054 0.946 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.640 23.208 7.066 26.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.061 3.939 3 C -0.192 4.192 4 C -0.238 4.238 5 O -0.270 6.270 6 C -0.003 4.003 7 H 0.137 0.863 8 C -0.165 4.165 9 C -0.203 4.203 10 H 0.166 0.834 11 C 0.333 3.667 12 O -0.429 6.429 13 O -0.265 6.265 14 C 0.050 3.950 15 C -0.153 4.153 16 C 0.018 3.982 17 N -0.334 5.334 18 C -0.396 4.396 19 H 0.092 0.908 20 C -0.248 4.248 21 N -0.583 5.583 22 Si 0.799 3.201 23 H -0.197 1.197 24 H -0.222 1.222 25 H -0.204 1.204 26 C 0.058 3.942 27 C -0.180 4.180 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.133 0.867 38 H 0.156 0.844 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.037 0.963 43 H 0.094 0.906 44 H 0.060 0.940 45 H 0.081 0.919 46 H 0.015 0.985 47 H 0.072 0.928 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.666 23.104 6.766 25.942 hybrid contribution 0.788 -1.106 -0.962 1.665 sum -8.878 21.997 5.804 24.421 Atomic orbital electron populations 1.22451 0.94116 1.02710 1.03911 1.21853 0.94421 0.93582 0.84093 1.21789 1.01760 0.91914 1.03753 1.22506 1.01856 1.00683 0.98797 1.87885 1.73992 1.20951 1.44206 1.22576 0.97733 0.82502 0.97479 0.86303 1.23664 0.93687 1.01974 0.97200 1.22305 1.00951 0.87815 1.09223 0.83358 1.23130 0.75331 0.87987 0.80218 1.90641 1.43640 1.80744 1.27919 1.86530 1.60998 1.22044 1.56925 1.22678 0.99071 0.78053 0.95214 1.22053 1.03224 0.93592 0.96462 1.21069 0.92362 0.94499 0.90285 1.44361 1.34661 1.32550 1.21862 1.19535 1.12195 1.15384 0.92466 0.90796 1.25881 1.02521 1.00420 0.95931 1.70184 1.38549 1.51156 0.98436 0.85286 0.79899 0.78676 0.76269 1.19716 1.22155 1.20360 1.20373 0.98644 0.84940 0.90201 1.22352 0.98824 0.99152 0.97648 0.91047 0.89866 0.92749 0.92284 0.89040 0.91265 0.93393 0.89569 0.92537 0.86670 0.84363 0.91528 0.88848 0.90956 0.96271 0.90631 0.93994 0.91938 0.98538 0.92759 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 8.38 71.98 0.60 -1.61 16 2 C 0.10 1.55 1.11 -10.79 -0.01 1.54 16 3 C -0.14 -1.59 8.84 71.98 0.64 -0.96 16 4 C -0.18 -3.11 8.38 71.98 0.60 -2.51 16 5 O -0.35 -6.99 10.24 -148.98 -1.53 -8.51 16 6 C 0.06 1.14 4.47 30.62 0.14 1.28 16 7 H 0.12 2.67 5.16 -2.38 -0.01 2.66 16 8 C -0.13 -2.15 10.19 30.62 0.31 -1.83 16 9 C -0.18 -4.18 6.24 -11.54 -0.07 -4.25 16 10 H 0.15 3.07 8.14 -2.39 -0.02 3.05 16 11 C 0.49 15.21 7.71 71.24 0.55 15.76 16 12 O -0.54 -19.80 15.48 21.94 0.34 -19.46 16 13 O -0.35 -11.62 9.88 -51.41 -0.51 -12.13 16 14 C 0.10 3.89 2.42 30.62 0.07 3.97 16 15 C -0.11 -3.94 5.74 30.67 0.18 -3.76 16 16 C 0.14 5.92 6.52 86.36 0.56 6.48 16 17 N -0.61 -31.32 3.00 -699.93 -2.10 -33.42 16 18 C -0.27 -14.68 9.58 84.04 0.81 -13.87 16 19 H 0.07 3.90 7.89 -2.91 -0.02 3.87 16 20 C -0.05 -2.95 4.91 84.86 0.42 -2.53 16 21 N -0.94 -56.45 11.19 21.65 0.24 -56.20 16 22 Si 0.97 45.03 29.59 68.60 2.03 47.06 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 26 C 0.18 9.43 5.28 86.22 0.46 9.88 16 27 C -0.14 -5.93 5.70 30.53 0.17 -5.76 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.78 6.71 -2.39 -0.02 0.76 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.98 6.53 -2.39 -0.02 0.97 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.14 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.07 2.67 7.16 -2.39 -0.02 2.65 16 40 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 42 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 43 H 0.08 2.92 7.93 -2.39 -0.02 2.90 16 44 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 45 H 0.06 3.56 6.04 -2.39 -0.01 3.55 16 46 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 47 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -67.64 382.18 4.82 -62.82 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.92 Total: 18.04 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 5.42 Total: 1.81 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -1.86 Total: -89.63 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -1.69 Total: -40.11 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -67.64 4.82 -62.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850896541.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.756 kcal (2) G-P(sol) polarization free energy of solvation -67.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds