Wall clock time and date at job start Fri Apr 10 2020 22:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47147 * 90.00197 * 9 7 5 11 11 H 1.48499 * 109.46797 * 209.99607 * 9 7 5 12 12 H 1.48500 * 109.47032 * 329.99738 * 9 7 5 13 13 O 1.45198 * 109.46884 * 294.99515 * 3 2 1 14 14 C 1.34232 * 116.99973 * 90.00459 * 13 3 2 15 15 O 1.20828 * 120.00187 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00321 * 180.02562 * 14 13 3 17 17 C 1.53000 * 109.47071 * 299.99943 * 16 14 13 18 18 C 1.53003 * 109.47373 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.46965 * 59.99830 * 18 17 16 20 20 C 1.50705 * 109.46986 * 180.02562 * 19 18 17 21 21 O 1.21287 * 119.99863 * 119.99779 * 20 19 18 22 22 N 1.34772 * 120.00119 * 300.00076 * 20 19 18 23 23 C 1.46500 * 120.00554 * 179.97438 * 22 20 19 24 24 C 1.46509 * 119.99962 * 359.97438 * 22 20 19 25 25 C 1.53006 * 109.47133 * 299.99754 * 19 18 17 26 26 C 1.52997 * 109.46808 * 60.00743 * 25 19 18 27 27 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 29 29 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 30 30 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 31 31 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 32 32 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47258 * 59.99528 * 16 14 13 34 34 H 1.09005 * 109.46740 * 299.99902 * 17 16 14 35 35 H 1.09000 * 109.47217 * 59.99669 * 17 16 14 36 36 H 1.08997 * 109.46999 * 299.99883 * 18 17 16 37 37 H 1.08999 * 109.47025 * 179.97438 * 18 17 16 38 38 H 1.08992 * 109.47682 * 60.00137 * 19 18 17 39 39 H 1.09000 * 109.47048 * 59.99638 * 23 22 20 40 40 H 1.08992 * 109.47750 * 179.97438 * 23 22 20 41 41 H 1.09007 * 109.46460 * 300.00025 * 23 22 20 42 42 H 1.08997 * 109.46611 * 90.00016 * 24 22 20 43 43 H 1.08992 * 109.47324 * 209.99950 * 24 22 20 44 44 H 1.08999 * 109.46667 * 330.00435 * 24 22 20 45 45 H 1.08997 * 109.47422 * 300.00309 * 25 19 18 46 46 H 1.09000 * 109.47137 * 180.02562 * 25 19 18 47 47 H 1.08998 * 109.46704 * 180.02562 * 26 25 19 48 48 H 1.08997 * 109.47484 * 59.99604 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3107 2.1547 12 1 6.6131 0.8396 0.0270 13 8 1.6559 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2561 15 8 -0.2193 2.7370 -0.2657 16 6 0.0069 3.4214 -2.5089 17 6 1.0133 4.5081 -2.8927 18 6 0.5401 5.2153 -4.1643 19 6 -0.8282 5.8526 -3.9143 20 6 -1.2945 6.5487 -5.1670 21 8 -2.3298 6.2090 -5.6998 22 7 -0.5612 7.5485 -5.6951 23 6 -1.0142 8.2248 -6.9132 24 6 0.6891 7.9591 -5.0512 25 6 -1.8345 4.7659 -3.5305 26 6 -1.3614 4.0588 -2.2589 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8293 -0.0608 2.9500 33 1 -0.0720 2.6967 -3.3193 34 1 1.0922 5.2328 -2.0823 35 1 1.9882 4.0541 -3.0704 36 1 0.4608 4.4909 -4.9748 37 1 1.2568 5.9897 -4.4375 38 1 -0.7490 6.5770 -3.1038 39 1 -1.9892 8.6788 -6.7355 40 1 -0.2977 8.9992 -7.1868 41 1 -1.0932 7.4998 -7.7233 42 1 1.5163 7.3803 -5.4619 43 1 0.8612 9.0196 -5.2349 44 1 0.6198 7.7828 -3.9778 45 1 -1.9138 4.0415 -4.3411 46 1 -2.8094 5.2199 -3.3529 47 1 -2.0781 3.2844 -1.9858 48 1 -1.2821 4.7832 -1.4484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850978806.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:25 Heat of formation + Delta-G solvation = -145.370264 kcal Electronic energy + Delta-G solvation = -27014.237446 eV Core-core repulsion = 23261.472608 eV Total energy + Delta-G solvation = -3752.764837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.70379 -39.69662 -37.53543 -35.89719 -35.64514 -33.49885 -31.81601 -31.24424 -30.82242 -28.28429 -27.34717 -26.66585 -24.27995 -23.05687 -22.67506 -21.12610 -20.03010 -19.36613 -19.24592 -17.13287 -17.01057 -16.51184 -16.42285 -16.06460 -15.54273 -15.35524 -14.64805 -14.28780 -14.20337 -14.07494 -13.56365 -13.23190 -13.01322 -12.97305 -12.85195 -12.72266 -12.43668 -12.31253 -12.03619 -11.97663 -11.57734 -11.44615 -11.35086 -11.20178 -11.12062 -11.04616 -10.94234 -10.64647 -10.50571 -10.27639 -10.15900 -9.87149 -9.76637 -9.45613 -9.29599 -8.99626 -8.78376 -8.45158 -6.18574 -4.25575 2.42175 2.72595 3.05953 3.23241 3.29095 3.32725 3.69458 4.22615 4.34258 4.50431 4.60000 4.70714 4.87433 4.94901 5.04152 5.07834 5.13246 5.15541 5.25039 5.26326 5.34651 5.37539 5.44588 5.46273 5.59188 5.77656 5.90201 5.95987 6.00136 6.10076 6.13806 6.18121 6.24392 6.30611 6.34273 6.42243 6.48551 6.88979 6.99101 7.03592 7.18518 7.29546 7.62377 7.75262 7.93916 7.97748 8.17457 8.66989 8.92161 9.39775 10.88173 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.021113 B = 0.003043 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.864066 B = 9199.248126 C =10238.536597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.046 0.954 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.356 6.356 14 C 0.454 3.546 15 O -0.517 6.517 16 C -0.084 4.084 17 C -0.108 4.108 18 C -0.119 4.119 19 C -0.108 4.108 20 C 0.518 3.482 21 O -0.538 6.538 22 N -0.625 5.625 23 C 0.089 3.911 24 C 0.073 3.927 25 C -0.096 4.096 26 C -0.102 4.102 27 H 0.032 0.968 28 H 0.052 0.948 29 H 0.031 0.969 30 H 0.041 0.959 31 H 0.108 0.892 32 H 0.266 0.734 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.414 13.984 -14.387 20.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.064 0.936 5 C -0.558 4.558 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.272 6.272 14 C 0.297 3.703 15 O -0.407 6.407 16 C -0.103 4.103 17 C -0.145 4.145 18 C -0.156 4.156 19 C -0.129 4.129 20 C 0.307 3.693 21 O -0.414 6.414 22 N -0.360 5.360 23 C -0.053 4.053 24 C -0.070 4.070 25 C -0.134 4.134 26 C -0.140 4.140 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.126 0.874 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.110 13.683 -14.179 20.630 hybrid contribution 0.985 -0.045 0.281 1.025 sum -5.126 13.638 -13.898 20.135 Atomic orbital electron populations 1.21856 0.98386 0.98954 1.00744 1.22012 0.92626 0.99458 1.03278 1.20638 0.94917 0.88748 0.78843 0.93641 1.21039 0.89757 1.38873 1.06142 0.91396 1.24891 0.99166 0.94813 0.95130 1.69897 1.35346 1.37871 1.09461 0.86302 0.84003 0.77681 0.78321 1.20441 1.20974 1.19607 1.86466 1.34395 1.62384 1.43924 1.23265 0.80749 0.76829 0.89452 1.90599 1.55509 1.58631 1.35973 1.21057 0.96332 0.97837 0.95062 1.21482 0.98862 0.96984 0.97185 1.21812 0.94531 1.00484 0.98804 1.21417 0.97679 0.98535 0.95247 1.20853 0.83411 0.79067 0.85998 1.90690 1.24002 1.64274 1.62474 1.47803 1.24185 1.36150 1.27822 1.21604 1.00205 0.97043 0.86488 1.22065 0.85546 1.00547 0.98804 1.21358 0.97577 0.96686 0.97761 1.21426 0.94837 1.00332 0.97363 0.94875 0.92845 0.94945 0.94044 0.87424 0.92418 0.88125 0.91145 0.89605 0.91107 0.90164 0.88306 0.92252 0.90780 0.92173 0.91831 0.91101 0.90274 0.91047 0.90923 0.90620 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.57 37.16 0.32 -2.81 16 2 C -0.14 -3.37 5.49 -26.73 -0.15 -3.52 16 3 C 0.22 5.80 2.25 -27.88 -0.06 5.74 16 4 H 0.05 1.33 7.16 -51.93 -0.37 0.96 16 5 C -0.52 -14.33 8.90 -34.44 -0.31 -14.63 16 6 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.93 11.30 55.43 0.63 -24.30 16 9 Si 0.91 20.76 29.54 -169.99 -5.02 15.74 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 O -0.36 -8.19 9.71 -39.26 -0.38 -8.57 16 14 C 0.45 9.08 5.71 36.00 0.21 9.29 16 15 O -0.52 -11.64 13.12 -18.75 -0.25 -11.89 16 16 C -0.08 -1.20 2.63 -91.77 -0.24 -1.44 16 17 C -0.11 -1.29 5.14 -26.73 -0.14 -1.42 16 18 C -0.12 -1.11 4.84 -26.73 -0.13 -1.23 16 19 C -0.11 -1.07 1.72 -91.77 -0.16 -1.23 16 20 C 0.52 5.84 7.08 -10.99 -0.08 5.76 16 21 O -0.54 -8.03 15.98 5.55 0.09 -7.94 16 22 N -0.63 -5.34 3.27 -189.51 -0.62 -5.96 16 23 C 0.09 0.64 10.16 59.85 0.61 1.25 16 24 C 0.07 0.40 8.77 59.85 0.52 0.92 16 25 C -0.10 -1.09 4.49 -26.73 -0.12 -1.21 16 26 C -0.10 -1.33 4.49 -26.73 -0.12 -1.45 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 1.23 7.80 -51.93 -0.40 0.83 16 29 H 0.03 0.68 6.06 -51.93 -0.31 0.37 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 32 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 33 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.10 8.11 -51.93 -0.42 0.67 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.58 4.53 -51.93 -0.24 0.35 16 38 H 0.10 0.86 7.40 -51.93 -0.38 0.48 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.32 7.79 -51.93 -0.40 -0.08 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.31 6.95 -51.93 -0.36 -0.05 16 43 H 0.07 0.26 7.92 -51.93 -0.41 -0.15 16 44 H 0.08 0.41 6.01 -51.93 -0.31 0.10 16 45 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 46 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 47 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 48 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 370.96 15.07 5.59 5.59 Total: -1.00 -32.56 370.96 -8.02 -40.58 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -8.12 Total: 1.15 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 0.06 Total: -4.40 kcal Atomic # 7 Polarization: -30.26 SS G_CDS: 0.01 Total: -30.26 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.54 Total: -28.40 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.56 -8.02 -40.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850978806.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.794 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds