Wall clock time and date at job start Fri Apr 10 2020 22:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47147 * 90.00197 * 9 7 5 11 11 H 1.48499 * 109.46797 * 209.99607 * 9 7 5 12 12 H 1.48500 * 109.47032 * 329.99738 * 9 7 5 13 13 O 1.45198 * 109.46884 * 294.99515 * 3 2 1 14 14 C 1.34232 * 116.99973 * 90.00459 * 13 3 2 15 15 O 1.20828 * 120.00187 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00321 * 180.02562 * 14 13 3 17 17 C 1.53000 * 109.47071 * 299.99943 * 16 14 13 18 18 C 1.53003 * 109.47373 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.46965 * 59.99830 * 18 17 16 20 20 C 1.50705 * 109.46986 * 180.02562 * 19 18 17 21 21 O 1.21287 * 119.99863 * 119.99779 * 20 19 18 22 22 N 1.34772 * 120.00119 * 300.00076 * 20 19 18 23 23 C 1.46500 * 120.00554 * 179.97438 * 22 20 19 24 24 C 1.46509 * 119.99962 * 359.97438 * 22 20 19 25 25 C 1.53006 * 109.47133 * 299.99754 * 19 18 17 26 26 C 1.52997 * 109.46808 * 60.00743 * 25 19 18 27 27 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 29 29 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 30 30 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 31 31 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 32 32 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47258 * 59.99528 * 16 14 13 34 34 H 1.09005 * 109.46740 * 299.99902 * 17 16 14 35 35 H 1.09000 * 109.47217 * 59.99669 * 17 16 14 36 36 H 1.08997 * 109.46999 * 299.99883 * 18 17 16 37 37 H 1.08999 * 109.47025 * 179.97438 * 18 17 16 38 38 H 1.08992 * 109.47682 * 60.00137 * 19 18 17 39 39 H 1.09000 * 109.47048 * 59.99638 * 23 22 20 40 40 H 1.08992 * 109.47750 * 179.97438 * 23 22 20 41 41 H 1.09007 * 109.46460 * 300.00025 * 23 22 20 42 42 H 1.08997 * 109.46611 * 90.00016 * 24 22 20 43 43 H 1.08992 * 109.47324 * 209.99950 * 24 22 20 44 44 H 1.08999 * 109.46667 * 330.00435 * 24 22 20 45 45 H 1.08997 * 109.47422 * 300.00309 * 25 19 18 46 46 H 1.09000 * 109.47137 * 180.02562 * 25 19 18 47 47 H 1.08998 * 109.46704 * 180.02562 * 26 25 19 48 48 H 1.08997 * 109.47484 * 59.99604 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3107 2.1547 12 1 6.6131 0.8396 0.0270 13 8 1.6559 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2561 15 8 -0.2193 2.7370 -0.2657 16 6 0.0069 3.4214 -2.5089 17 6 1.0133 4.5081 -2.8927 18 6 0.5401 5.2153 -4.1643 19 6 -0.8282 5.8526 -3.9143 20 6 -1.2945 6.5487 -5.1670 21 8 -2.3298 6.2090 -5.6998 22 7 -0.5612 7.5485 -5.6951 23 6 -1.0142 8.2248 -6.9132 24 6 0.6891 7.9591 -5.0512 25 6 -1.8345 4.7659 -3.5305 26 6 -1.3614 4.0588 -2.2589 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8293 -0.0608 2.9500 33 1 -0.0720 2.6967 -3.3193 34 1 1.0922 5.2328 -2.0823 35 1 1.9882 4.0541 -3.0704 36 1 0.4608 4.4909 -4.9748 37 1 1.2568 5.9897 -4.4375 38 1 -0.7490 6.5770 -3.1038 39 1 -1.9892 8.6788 -6.7355 40 1 -0.2977 8.9992 -7.1868 41 1 -1.0932 7.4998 -7.7233 42 1 1.5163 7.3803 -5.4619 43 1 0.8612 9.0196 -5.2349 44 1 0.6198 7.7828 -3.9778 45 1 -1.9138 4.0415 -4.3411 46 1 -2.8094 5.2199 -3.3529 47 1 -2.0781 3.2844 -1.9858 48 1 -1.2821 4.7832 -1.4484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850978806.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:24 Heat of formation + Delta-G solvation = -163.867539 kcal Electronic energy + Delta-G solvation = -27015.039548 eV Core-core repulsion = 23261.472608 eV Total energy + Delta-G solvation = -3753.566939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.78639 -41.09113 -38.70747 -37.38367 -36.63375 -35.47290 -33.42761 -32.63758 -31.80313 -29.35741 -28.80282 -27.45090 -25.65516 -24.73855 -23.63141 -22.56395 -21.50898 -20.76632 -20.13954 -18.87130 -18.34266 -17.86450 -17.38020 -17.25010 -16.99265 -16.55976 -16.38515 -15.44681 -15.22280 -14.94329 -14.86843 -14.77898 -14.30478 -13.90064 -13.85539 -13.59021 -13.51328 -13.36284 -13.30217 -13.13105 -13.11696 -13.07694 -12.78895 -12.64196 -12.61718 -12.40412 -12.28065 -12.11660 -12.03870 -11.74412 -11.47882 -11.40272 -11.16294 -11.04746 -10.78704 -10.66188 -10.49538 -9.65980 -8.25369 -6.41969 1.42494 1.44121 1.45419 1.56506 1.59490 2.05514 2.11701 2.44732 3.04386 3.44714 3.58135 3.67547 3.92952 4.06369 4.10941 4.24729 4.31582 4.34486 4.37649 4.39958 4.43447 4.48162 4.48830 4.53344 4.59246 4.75402 4.80884 4.82553 4.87721 4.92572 4.94562 5.00895 5.08760 5.12239 5.15899 5.19573 5.22493 5.32507 5.41009 5.41583 5.54346 5.54508 5.69119 6.01425 6.18783 6.34639 6.63971 7.06893 7.15231 7.30643 8.81392 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.021113 B = 0.003043 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.864066 B = 9199.248126 C =10238.536597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.225 3.775 4 H 0.005 0.995 5 C -0.546 4.546 6 H 0.068 0.932 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.980 3.020 10 H -0.272 1.272 11 H -0.278 1.278 12 H -0.262 1.262 13 O -0.361 6.361 14 C 0.448 3.552 15 O -0.546 6.546 16 C -0.076 4.076 17 C -0.103 4.103 18 C -0.107 4.107 19 C -0.104 4.104 20 C 0.514 3.486 21 O -0.584 6.584 22 N -0.621 5.621 23 C 0.085 3.915 24 C 0.063 3.937 25 C -0.088 4.088 26 C -0.094 4.094 27 H 0.059 0.941 28 H 0.034 0.966 29 H 0.037 0.963 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.269 0.731 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.050 0.950 40 H 0.107 0.893 41 H 0.049 0.951 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.923 15.346 -15.846 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.169 4.169 3 C 0.172 3.828 4 H 0.023 0.977 5 C -0.584 4.584 6 H 0.086 0.914 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.803 3.197 10 H -0.197 1.197 11 H -0.203 1.203 12 H -0.186 1.186 13 O -0.278 6.278 14 C 0.293 3.707 15 O -0.437 6.437 16 C -0.095 4.095 17 C -0.141 4.141 18 C -0.144 4.144 19 C -0.124 4.124 20 C 0.303 3.697 21 O -0.464 6.464 22 N -0.354 5.354 23 C -0.057 4.057 24 C -0.079 4.079 25 C -0.126 4.126 26 C -0.131 4.131 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.133 0.867 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.068 0.932 40 H 0.125 0.875 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.112 0.888 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.603 15.080 -15.655 22.219 hybrid contribution 0.473 -0.411 0.741 0.970 sum -4.130 14.669 -14.914 21.323 Atomic orbital electron populations 1.21709 0.96395 1.00486 1.00064 1.21869 0.94365 0.98404 1.02221 1.20315 0.94512 0.89120 0.78874 0.97743 1.21335 0.90533 1.39720 1.06770 0.91417 1.25817 1.04188 0.93959 0.94451 1.70028 1.37425 1.38099 1.09891 0.85222 0.77799 0.77935 0.78710 1.19715 1.20340 1.18583 1.86462 1.36201 1.62934 1.42192 1.24418 0.79338 0.75938 0.90981 1.90586 1.55928 1.59492 1.37672 1.21229 0.97491 0.98549 0.92274 1.21476 0.97757 0.96215 0.98609 1.21758 0.94657 1.00927 0.97077 1.21380 0.97299 0.98349 0.95420 1.21004 0.83091 0.79554 0.86065 1.90672 1.26052 1.65931 1.63776 1.47931 1.24600 1.34996 1.27838 1.21730 1.00877 0.97456 0.85674 1.22340 0.84254 1.02292 0.98996 1.21240 0.97992 0.96920 0.96418 1.21352 0.93718 0.99900 0.98156 0.92158 0.94642 0.94418 0.93653 0.89702 0.92144 0.86680 0.90973 0.90173 0.91157 0.87333 0.86634 0.93172 0.87458 0.93178 0.90583 0.88797 0.89745 0.91590 0.91174 0.91809 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.75 8.57 71.98 0.62 -5.13 16 2 C -0.13 -6.61 5.49 30.60 0.17 -6.45 16 3 C 0.23 12.16 2.25 29.85 0.07 12.23 16 4 H 0.00 0.29 7.16 -2.39 -0.02 0.27 16 5 C -0.55 -30.53 8.90 25.60 0.23 -30.30 16 6 H 0.07 3.68 7.81 -2.91 -0.02 3.66 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.92 -52.36 11.30 21.45 0.24 -52.12 16 9 Si 0.98 42.27 29.54 68.60 2.03 44.30 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 11 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 12 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 13 O -0.36 -16.91 9.71 -51.43 -0.50 -17.41 16 14 C 0.45 18.14 5.71 71.23 0.41 18.55 16 15 O -0.55 -25.27 13.12 21.96 0.29 -24.99 16 16 C -0.08 -2.14 2.63 -11.54 -0.03 -2.17 16 17 C -0.10 -2.28 5.14 30.60 0.16 -2.13 16 18 C -0.11 -1.70 4.84 30.59 0.15 -1.56 16 19 C -0.10 -1.85 1.72 -11.54 -0.02 -1.87 16 20 C 0.51 10.77 7.08 87.66 0.62 11.39 16 21 O -0.58 -17.21 15.98 -3.05 -0.05 -17.26 16 22 N -0.62 -9.03 3.27 -871.88 -2.85 -11.89 16 23 C 0.08 1.04 10.16 127.77 1.30 2.34 16 24 C 0.06 0.45 8.77 127.77 1.12 1.57 16 25 C -0.09 -1.92 4.49 30.60 0.14 -1.78 16 26 C -0.09 -2.39 4.49 30.59 0.14 -2.25 16 27 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 28 H 0.03 1.67 7.80 -2.39 -0.02 1.65 16 29 H 0.04 1.60 6.06 -2.39 -0.01 1.58 16 30 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.08 4.70 5.95 -2.39 -0.01 4.69 16 32 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 33 H 0.12 2.93 8.14 -2.38 -0.02 2.91 16 34 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.08 1.91 8.11 -2.39 -0.02 1.89 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.11 1.16 4.53 -2.39 -0.01 1.15 16 38 H 0.12 1.71 7.40 -2.39 -0.02 1.69 16 39 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.11 0.57 7.79 -2.39 -0.02 0.56 16 41 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 42 H 0.08 0.40 6.95 -2.39 -0.02 0.39 16 43 H 0.09 0.29 7.92 -2.39 -0.02 0.27 16 44 H 0.08 0.55 6.01 -2.39 -0.01 0.53 16 45 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 46 H 0.07 1.59 8.10 -2.39 -0.02 1.57 16 47 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 48 H 0.07 1.80 8.10 -2.39 -0.02 1.78 16 Total: -1.00 -72.81 370.96 5.59 -67.22 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.93 Total: 18.42 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 5.50 Total: -6.28 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -2.61 Total: -64.01 kcal Atomic # 8 Polarization: -59.39 SS G_CDS: -0.26 Total: -59.65 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -72.81 5.59 -67.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850978806.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.647 kcal (2) G-P(sol) polarization free energy of solvation -72.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds