Wall clock time and date at job start Fri Apr 10 2020 22:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46745 * 2 1 4 4 H 1.09005 * 109.47252 * 304.53562 * 3 2 1 5 5 C 1.50704 * 109.47026 * 184.53849 * 3 2 1 6 6 H 1.07998 * 119.99867 * 245.63052 * 5 3 2 7 7 C 1.37877 * 119.99922 * 65.62450 * 5 3 2 8 8 N 1.31513 * 119.99770 * 195.86280 * 7 5 3 9 9 Si 1.86796 * 120.00053 * 15.87134 * 7 5 3 10 10 H 1.48504 * 109.46786 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.46811 * 299.99349 * 9 7 5 12 12 H 1.48498 * 109.47281 * 59.99897 * 9 7 5 13 13 O 1.45196 * 109.47119 * 64.53536 * 3 2 1 14 14 C 1.34224 * 117.00521 * 269.99731 * 13 3 2 15 15 O 1.20826 * 119.99741 * 0.02562 * 14 13 3 16 16 C 1.50693 * 120.00371 * 179.97438 * 14 13 3 17 17 C 1.52997 * 109.47418 * 300.00139 * 16 14 13 18 18 C 1.53002 * 109.47591 * 179.97438 * 17 16 14 19 19 C 1.53005 * 109.46861 * 60.00011 * 18 17 16 20 20 C 1.50693 * 109.47070 * 180.02562 * 19 18 17 21 21 O 1.21280 * 120.00438 * 120.00155 * 20 19 18 22 22 N 1.34779 * 120.00241 * 300.00270 * 20 19 18 23 23 C 1.46497 * 120.00430 * 180.02562 * 22 20 19 24 24 C 1.46504 * 119.99808 * 359.97438 * 22 20 19 25 25 C 1.52997 * 109.47009 * 300.00346 * 19 18 17 26 26 C 1.52993 * 109.47547 * 59.99973 * 25 19 18 27 27 H 1.08996 * 109.47613 * 299.99881 * 1 2 3 28 28 H 1.09005 * 109.47568 * 60.00070 * 1 2 3 29 29 H 1.09005 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46997 * 240.00776 * 2 1 3 31 31 H 1.08996 * 109.47180 * 120.00345 * 2 1 3 32 32 H 0.97008 * 120.00172 * 354.88311 * 8 7 5 33 33 H 1.09003 * 109.47522 * 60.00187 * 16 14 13 34 34 H 1.08997 * 109.47147 * 300.00164 * 17 16 14 35 35 H 1.09001 * 109.47160 * 59.99729 * 17 16 14 36 36 H 1.08997 * 109.47132 * 300.00323 * 18 17 16 37 37 H 1.09000 * 109.46876 * 179.97438 * 18 17 16 38 38 H 1.08997 * 109.46992 * 60.00227 * 19 18 17 39 39 H 1.08998 * 109.47709 * 89.99698 * 23 22 20 40 40 H 1.08997 * 109.47139 * 209.99786 * 23 22 20 41 41 H 1.09005 * 109.46944 * 329.99154 * 23 22 20 42 42 H 1.09002 * 109.46837 * 90.00144 * 24 22 20 43 43 H 1.09000 * 109.47512 * 209.99929 * 24 22 20 44 44 H 1.09001 * 109.47525 * 330.00850 * 24 22 20 45 45 H 1.09003 * 109.46813 * 299.99469 * 25 19 18 46 46 H 1.09001 * 109.47160 * 180.02562 * 25 19 18 47 47 H 1.09004 * 109.47276 * 179.97438 * 26 25 19 48 48 H 1.09003 * 109.47475 * 59.99902 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6117 1.9793 -0.8466 5 6 3.5427 1.4441 -0.1124 6 1 4.1451 1.8080 0.7068 7 6 4.1486 0.9808 -1.2611 8 7 5.4304 0.6869 -1.2557 9 14 3.1488 0.7710 -2.8249 10 1 4.0271 0.2636 -3.9095 11 1 2.0496 -0.1979 -2.5834 12 1 2.5750 2.0809 -3.2252 13 8 1.6463 2.0950 1.2359 14 6 0.4631 2.7288 1.2405 15 8 -0.2213 2.7376 0.2448 16 6 -0.0122 3.4282 2.4878 17 6 -0.1318 2.4142 3.6272 18 6 -0.6138 3.1245 4.8937 19 6 -1.9802 3.7615 4.6325 20 6 -2.4546 4.4616 5.8797 21 8 -2.6756 5.6539 5.8592 22 7 -2.6334 3.7628 7.0183 23 6 -3.0953 4.4432 8.2306 24 6 -2.3670 2.3224 7.0431 25 6 -1.8606 4.7755 3.4931 26 6 -1.3786 4.0653 2.2267 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 5.9657 0.8655 -0.4666 33 1 0.7025 4.2032 2.7646 34 1 -0.8466 1.6393 3.3504 35 1 0.8417 1.9606 3.8135 36 1 0.1013 3.8992 5.1703 37 1 -0.6993 2.4019 5.7053 38 1 -2.6953 2.9868 4.3559 39 1 -4.1846 4.4264 8.2643 40 1 -2.6968 3.9333 9.1077 41 1 -2.7479 5.4764 8.2221 42 1 -1.3259 2.1502 7.3160 43 1 -3.0182 1.8449 7.7753 44 1 -2.5586 1.9003 6.0566 45 1 -1.1455 5.5503 3.7698 46 1 -2.8340 5.2297 3.3073 47 1 -1.2939 4.7877 1.4148 48 1 -2.0937 3.2906 1.9500 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850978807.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:27 Heat of formation + Delta-G solvation = -144.015264 kcal Electronic energy + Delta-G solvation = -27171.000525 eV Core-core repulsion = 23418.294445 eV Total energy + Delta-G solvation = -3752.706080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.79609 -39.88560 -37.66105 -35.94652 -35.85181 -33.56972 -32.03823 -31.65206 -30.94291 -28.34143 -27.59173 -26.73417 -24.30041 -22.80502 -22.46003 -21.39707 -20.18610 -19.43627 -19.38763 -17.80216 -17.21196 -16.87558 -16.53030 -16.14279 -15.79683 -15.51435 -14.77344 -14.30394 -14.17668 -13.86808 -13.61647 -13.35962 -13.14497 -13.02341 -12.88939 -12.78978 -12.57998 -12.46850 -12.40173 -12.19751 -12.05346 -11.75481 -11.56439 -11.38494 -11.21646 -11.13626 -10.91011 -10.59766 -10.53607 -10.25410 -10.01538 -9.95091 -9.74514 -9.61302 -9.43018 -9.04302 -8.84874 -8.38626 -6.64439 -4.25501 2.36350 2.67616 2.87299 3.30421 3.38868 3.48443 3.56855 4.17493 4.35546 4.42458 4.51600 4.65544 4.82534 4.88173 4.95842 4.98661 5.08681 5.10112 5.17127 5.20358 5.24770 5.29664 5.35370 5.44258 5.47104 5.68778 5.76754 5.83444 5.89034 5.91246 5.95289 5.99577 6.05299 6.08224 6.12063 6.23160 6.32688 6.45923 6.61391 6.78187 6.83619 6.98406 7.18460 7.41503 7.83440 7.88456 8.23923 8.51958 8.84590 9.42724 10.78330 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.028719 B = 0.002943 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.736465 B = 9510.472276 C = 9669.964340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.200 3.800 4 H 0.037 0.963 5 C -0.606 4.606 6 H 0.068 0.932 7 C 0.039 3.961 8 N -0.895 5.895 9 Si 1.037 2.963 10 H -0.280 1.280 11 H -0.269 1.269 12 H -0.278 1.278 13 O -0.343 6.343 14 C 0.454 3.546 15 O -0.519 6.519 16 C -0.084 4.084 17 C -0.107 4.107 18 C -0.119 4.119 19 C -0.107 4.107 20 C 0.518 3.482 21 O -0.538 6.538 22 N -0.625 5.625 23 C 0.084 3.916 24 C 0.074 3.926 25 C -0.096 4.096 26 C -0.102 4.102 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.271 0.729 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.776 2.365 16.964 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.146 3.854 4 H 0.055 0.945 5 C -0.643 4.643 6 H 0.086 0.914 7 C -0.167 4.167 8 N -0.528 5.528 9 Si 0.864 3.136 10 H -0.205 1.205 11 H -0.195 1.195 12 H -0.204 1.204 13 O -0.259 6.259 14 C 0.297 3.703 15 O -0.409 6.409 16 C -0.103 4.103 17 C -0.145 4.145 18 C -0.157 4.157 19 C -0.128 4.128 20 C 0.307 3.693 21 O -0.415 6.415 22 N -0.359 5.359 23 C -0.058 4.058 24 C -0.069 4.069 25 C -0.134 4.134 26 C -0.139 4.139 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.941 2.437 15.079 22.810 hybrid contribution -0.056 0.401 1.619 1.669 sum -16.997 2.837 16.698 23.996 Atomic orbital electron populations 1.21901 0.97458 0.99715 1.01463 1.22431 0.93763 0.99456 1.02914 1.20893 0.96126 0.88032 0.80318 0.94517 1.21948 0.88755 1.49053 1.04568 0.91418 1.25660 0.97390 0.92652 1.01040 1.70866 1.07235 1.40846 1.33894 0.84176 0.75580 0.77804 0.76047 1.20495 1.19496 1.20444 1.86527 1.34354 1.62214 1.42765 1.23402 0.80538 0.76832 0.89552 1.90588 1.56084 1.58664 1.35553 1.21068 0.98774 0.98460 0.92018 1.21484 1.03103 0.97096 0.92809 1.21814 0.94833 1.00460 0.98559 1.21408 0.98970 0.99372 0.93097 1.20844 0.76621 0.87232 0.84611 1.90689 1.50921 1.15210 1.84633 1.47776 1.67783 1.09395 1.10962 1.21629 0.99331 0.98896 0.85986 1.22026 1.01398 0.79989 1.03511 1.21359 1.02652 0.96843 0.92575 1.21430 0.94698 1.00387 0.97426 0.93963 0.92703 0.94150 0.90361 0.92063 0.91863 0.87831 0.91227 0.89698 0.90987 0.90104 0.88329 0.92854 0.91276 0.90540 0.91826 0.91079 0.90329 0.90951 0.90833 0.90511 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.56 37.16 0.32 -2.53 16 2 C -0.15 -3.30 5.32 -26.73 -0.14 -3.44 16 3 C 0.20 4.98 1.84 -27.88 -0.05 4.93 16 4 H 0.04 0.96 5.84 -51.93 -0.30 0.66 16 5 C -0.61 -17.20 9.17 -34.44 -0.32 -17.51 16 6 H 0.07 2.07 8.06 -52.49 -0.42 1.64 16 7 C 0.04 1.10 5.33 -17.82 -0.09 1.01 16 8 N -0.90 -26.93 13.70 55.43 0.76 -26.17 16 9 Si 1.04 24.95 26.27 -169.99 -4.47 20.48 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -5.94 5.62 56.52 0.32 -5.63 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 O -0.34 -7.69 9.70 -39.24 -0.38 -8.07 16 14 C 0.45 8.67 5.69 36.00 0.21 8.87 16 15 O -0.52 -10.95 13.12 -18.75 -0.25 -11.20 16 16 C -0.08 -1.16 2.63 -91.77 -0.24 -1.40 16 17 C -0.11 -1.20 5.14 -26.73 -0.14 -1.33 16 18 C -0.12 -1.05 4.84 -26.73 -0.13 -1.17 16 19 C -0.11 -1.01 1.72 -91.77 -0.16 -1.16 16 20 C 0.52 5.62 7.08 -10.99 -0.08 5.54 16 21 O -0.54 -7.81 15.56 5.56 0.09 -7.73 16 22 N -0.62 -5.10 3.27 -189.52 -0.62 -5.72 16 23 C 0.08 0.58 10.44 59.85 0.62 1.20 16 24 C 0.07 0.37 8.80 59.85 0.53 0.90 16 25 C -0.10 -1.05 4.49 -26.74 -0.12 -1.17 16 26 C -0.10 -1.25 4.50 -26.73 -0.12 -1.37 16 27 H 0.04 0.78 6.07 -51.93 -0.31 0.46 16 28 H 0.05 1.09 7.77 -51.93 -0.40 0.69 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.80 4.68 -51.93 -0.24 1.56 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.27 8.09 8.73 -40.82 -0.36 7.73 16 33 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.54 4.53 -51.93 -0.24 0.31 16 38 H 0.10 0.79 7.40 -51.93 -0.38 0.41 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 41 H 0.08 0.65 7.42 -51.93 -0.39 0.26 16 42 H 0.06 0.28 6.95 -51.93 -0.36 -0.08 16 43 H 0.07 0.24 8.07 -51.93 -0.42 -0.17 16 44 H 0.08 0.36 6.01 -51.93 -0.31 0.05 16 45 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 46 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 47 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 48 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 LS Contribution 365.96 15.07 5.51 5.51 Total: -1.00 -33.73 365.96 -7.35 -41.07 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -8.08 Total: 0.46 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 7 Polarization: -32.03 SS G_CDS: 0.14 Total: -31.89 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.54 Total: -27.00 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -4.47 Total: 20.48 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.73 -7.35 -41.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850978807.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.940 kcal (2) G-P(sol) polarization free energy of solvation -33.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds