Wall clock time and date at job start Fri Apr 10 2020 22:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46745 * 2 1 4 4 H 1.09005 * 109.47252 * 304.53562 * 3 2 1 5 5 C 1.50704 * 109.47026 * 184.53849 * 3 2 1 6 6 H 1.07998 * 119.99867 * 245.63052 * 5 3 2 7 7 C 1.37877 * 119.99922 * 65.62450 * 5 3 2 8 8 N 1.31513 * 119.99770 * 195.86280 * 7 5 3 9 9 Si 1.86796 * 120.00053 * 15.87134 * 7 5 3 10 10 H 1.48504 * 109.46786 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.46811 * 299.99349 * 9 7 5 12 12 H 1.48498 * 109.47281 * 59.99897 * 9 7 5 13 13 O 1.45196 * 109.47119 * 64.53536 * 3 2 1 14 14 C 1.34224 * 117.00521 * 269.99731 * 13 3 2 15 15 O 1.20826 * 119.99741 * 0.02562 * 14 13 3 16 16 C 1.50693 * 120.00371 * 179.97438 * 14 13 3 17 17 C 1.52997 * 109.47418 * 300.00139 * 16 14 13 18 18 C 1.53002 * 109.47591 * 179.97438 * 17 16 14 19 19 C 1.53005 * 109.46861 * 60.00011 * 18 17 16 20 20 C 1.50693 * 109.47070 * 180.02562 * 19 18 17 21 21 O 1.21280 * 120.00438 * 120.00155 * 20 19 18 22 22 N 1.34779 * 120.00241 * 300.00270 * 20 19 18 23 23 C 1.46497 * 120.00430 * 180.02562 * 22 20 19 24 24 C 1.46504 * 119.99808 * 359.97438 * 22 20 19 25 25 C 1.52997 * 109.47009 * 300.00346 * 19 18 17 26 26 C 1.52993 * 109.47547 * 59.99973 * 25 19 18 27 27 H 1.08996 * 109.47613 * 299.99881 * 1 2 3 28 28 H 1.09005 * 109.47568 * 60.00070 * 1 2 3 29 29 H 1.09005 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46997 * 240.00776 * 2 1 3 31 31 H 1.08996 * 109.47180 * 120.00345 * 2 1 3 32 32 H 0.97008 * 120.00172 * 354.88311 * 8 7 5 33 33 H 1.09003 * 109.47522 * 60.00187 * 16 14 13 34 34 H 1.08997 * 109.47147 * 300.00164 * 17 16 14 35 35 H 1.09001 * 109.47160 * 59.99729 * 17 16 14 36 36 H 1.08997 * 109.47132 * 300.00323 * 18 17 16 37 37 H 1.09000 * 109.46876 * 179.97438 * 18 17 16 38 38 H 1.08997 * 109.46992 * 60.00227 * 19 18 17 39 39 H 1.08998 * 109.47709 * 89.99698 * 23 22 20 40 40 H 1.08997 * 109.47139 * 209.99786 * 23 22 20 41 41 H 1.09005 * 109.46944 * 329.99154 * 23 22 20 42 42 H 1.09002 * 109.46837 * 90.00144 * 24 22 20 43 43 H 1.09000 * 109.47512 * 209.99929 * 24 22 20 44 44 H 1.09001 * 109.47525 * 330.00850 * 24 22 20 45 45 H 1.09003 * 109.46813 * 299.99469 * 25 19 18 46 46 H 1.09001 * 109.47160 * 180.02562 * 25 19 18 47 47 H 1.09004 * 109.47276 * 179.97438 * 26 25 19 48 48 H 1.09003 * 109.47475 * 59.99902 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6117 1.9793 -0.8466 5 6 3.5427 1.4441 -0.1124 6 1 4.1451 1.8080 0.7068 7 6 4.1486 0.9808 -1.2611 8 7 5.4304 0.6869 -1.2557 9 14 3.1488 0.7710 -2.8249 10 1 4.0271 0.2636 -3.9095 11 1 2.0496 -0.1979 -2.5834 12 1 2.5750 2.0809 -3.2252 13 8 1.6463 2.0950 1.2359 14 6 0.4631 2.7288 1.2405 15 8 -0.2213 2.7376 0.2448 16 6 -0.0122 3.4282 2.4878 17 6 -0.1318 2.4142 3.6272 18 6 -0.6138 3.1245 4.8937 19 6 -1.9802 3.7615 4.6325 20 6 -2.4546 4.4616 5.8797 21 8 -2.6756 5.6539 5.8592 22 7 -2.6334 3.7628 7.0183 23 6 -3.0953 4.4432 8.2306 24 6 -2.3670 2.3224 7.0431 25 6 -1.8606 4.7755 3.4931 26 6 -1.3786 4.0653 2.2267 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 5.9657 0.8655 -0.4666 33 1 0.7025 4.2032 2.7646 34 1 -0.8466 1.6393 3.3504 35 1 0.8417 1.9606 3.8135 36 1 0.1013 3.8992 5.1703 37 1 -0.6993 2.4019 5.7053 38 1 -2.6953 2.9868 4.3559 39 1 -4.1846 4.4264 8.2643 40 1 -2.6968 3.9333 9.1077 41 1 -2.7479 5.4764 8.2221 42 1 -1.3259 2.1502 7.3160 43 1 -3.0182 1.8449 7.7753 44 1 -2.5586 1.9003 6.0566 45 1 -1.1455 5.5503 3.7698 46 1 -2.8340 5.2297 3.3073 47 1 -1.2939 4.7877 1.4148 48 1 -2.0937 3.2906 1.9500 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850978807.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:27 Heat of formation + Delta-G solvation = -164.732989 kcal Electronic energy + Delta-G solvation = -27171.898913 eV Core-core repulsion = 23418.294445 eV Total energy + Delta-G solvation = -3753.604468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.87249 -41.16167 -38.77590 -37.48532 -36.63899 -35.52229 -33.89154 -32.72058 -31.84097 -29.51239 -28.83664 -27.46268 -25.43084 -24.33579 -23.65348 -22.74324 -21.55619 -20.82889 -20.15579 -19.87461 -18.57969 -17.90354 -17.51045 -17.24536 -17.05980 -16.64984 -16.00950 -15.39418 -15.21772 -15.06442 -14.88548 -14.71754 -14.66303 -14.41667 -14.01922 -13.80653 -13.56628 -13.45318 -13.40885 -13.21935 -13.09198 -13.01069 -12.73322 -12.68463 -12.49988 -12.39273 -12.31025 -12.06808 -11.90095 -11.56667 -11.53504 -11.41820 -11.18256 -11.07235 -10.84196 -10.67942 -10.57380 -9.66331 -8.93288 -6.55717 1.34026 1.38605 1.45840 1.58031 1.64444 1.99880 2.08866 2.34720 2.90782 3.41022 3.54585 3.64838 3.84382 4.02661 4.06872 4.19294 4.21476 4.26813 4.28182 4.32010 4.38247 4.44150 4.46709 4.49204 4.52116 4.62110 4.74605 4.80778 4.81194 4.92013 4.92804 4.97449 5.02867 5.08488 5.10384 5.12631 5.14810 5.18790 5.29660 5.38115 5.43080 5.51746 5.52631 5.86086 5.99552 6.33481 6.40043 6.96675 7.14004 7.22871 8.48702 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.028719 B = 0.002943 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.736465 B = 9510.472276 C = 9669.964340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.144 4.144 3 C 0.201 3.799 4 H 0.025 0.975 5 C -0.616 4.616 6 H 0.030 0.970 7 C -0.004 4.004 8 N -0.921 5.921 9 Si 1.070 2.930 10 H -0.275 1.275 11 H -0.235 1.235 12 H -0.272 1.272 13 O -0.358 6.358 14 C 0.450 3.550 15 O -0.538 6.538 16 C -0.079 4.079 17 C -0.102 4.102 18 C -0.109 4.109 19 C -0.102 4.102 20 C 0.513 3.487 21 O -0.586 6.586 22 N -0.621 5.621 23 C 0.080 3.920 24 C 0.063 3.937 25 C -0.089 4.089 26 C -0.092 4.092 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.258 0.742 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.059 0.941 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.258 0.784 18.020 26.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.182 4.182 3 C 0.147 3.853 4 H 0.043 0.957 5 C -0.653 4.653 6 H 0.048 0.952 7 C -0.204 4.204 8 N -0.555 5.555 9 Si 0.890 3.110 10 H -0.200 1.200 11 H -0.159 1.159 12 H -0.197 1.197 13 O -0.274 6.274 14 C 0.295 3.705 15 O -0.428 6.428 16 C -0.098 4.098 17 C -0.139 4.139 18 C -0.146 4.146 19 C -0.123 4.123 20 C 0.302 3.698 21 O -0.466 6.466 22 N -0.354 5.354 23 C -0.062 4.062 24 C -0.078 4.078 25 C -0.127 4.127 26 C -0.130 4.130 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.128 0.872 38 H 0.138 0.862 39 H 0.077 0.923 40 H 0.115 0.885 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.435 0.824 16.191 25.309 hybrid contribution 0.738 0.959 1.413 1.860 sum -18.697 1.784 17.604 25.742 Atomic orbital electron populations 1.21805 0.94649 1.01798 1.01341 1.22302 0.96194 0.97083 1.02622 1.20629 0.93709 0.89895 0.81090 0.95705 1.22110 0.90994 1.48665 1.03567 0.95208 1.26998 0.97538 0.91850 1.04012 1.70975 1.08244 1.42880 1.33433 0.83782 0.75499 0.79037 0.72637 1.19986 1.15875 1.19741 1.86515 1.36424 1.62968 1.41460 1.24409 0.79119 0.75990 0.91014 1.90571 1.56261 1.59262 1.36751 1.21243 0.99377 0.98802 0.90404 1.21479 1.03204 0.96679 0.92575 1.21768 0.94090 1.00689 0.98069 1.21371 0.99789 0.99174 0.91936 1.21051 0.76388 0.86753 0.85611 1.90672 1.53302 1.17187 1.85440 1.47917 1.66351 1.10723 1.10400 1.21740 0.99823 0.98129 0.86528 1.22305 1.02692 0.77943 1.04888 1.21249 1.02085 0.96919 0.92490 1.21357 0.93786 1.00093 0.97770 0.93481 0.93451 0.90922 0.90966 0.92074 0.93248 0.87435 0.90040 0.90524 0.91673 0.87228 0.86151 0.92281 0.88465 0.92678 0.90682 0.88940 0.89449 0.92060 0.91014 0.91857 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 8.56 71.98 0.62 -4.31 16 2 C -0.14 -6.22 5.32 30.59 0.16 -6.05 16 3 C 0.20 10.00 1.84 29.85 0.05 10.05 16 4 H 0.03 1.31 5.84 -2.38 -0.01 1.29 16 5 C -0.62 -35.91 9.17 25.60 0.23 -35.67 16 6 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 7 C 0.00 -0.22 5.33 84.65 0.45 0.23 16 8 N -0.92 -56.76 13.70 21.45 0.29 -56.47 16 9 Si 1.07 49.68 26.27 68.60 1.80 51.48 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.23 -9.58 5.62 99.48 0.56 -9.02 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 O -0.36 -16.04 9.70 -51.36 -0.50 -16.54 16 14 C 0.45 16.85 5.69 71.23 0.41 17.26 16 15 O -0.54 -22.20 13.12 21.97 0.29 -21.91 16 16 C -0.08 -2.09 2.63 -11.54 -0.03 -2.12 16 17 C -0.10 -2.03 5.14 30.59 0.16 -1.87 16 18 C -0.11 -1.60 4.84 30.60 0.15 -1.46 16 19 C -0.10 -1.66 1.72 -11.54 -0.02 -1.68 16 20 C 0.51 10.27 7.08 87.65 0.62 10.89 16 21 O -0.59 -16.87 15.56 -3.03 -0.05 -16.92 16 22 N -0.62 -8.53 3.27 -871.89 -2.85 -11.38 16 23 C 0.08 0.95 10.44 127.77 1.33 2.28 16 24 C 0.06 0.38 8.80 127.77 1.12 1.51 16 25 C -0.09 -1.84 4.49 30.59 0.14 -1.71 16 26 C -0.09 -2.16 4.50 30.59 0.14 -2.02 16 27 H 0.05 1.60 6.07 -2.39 -0.01 1.59 16 28 H 0.05 1.75 7.77 -2.38 -0.02 1.73 16 29 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.07 3.17 4.68 -2.39 -0.01 3.16 16 31 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.26 16.07 8.73 -92.70 -0.81 15.26 16 33 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.70 8.11 -2.39 -0.02 1.68 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.11 1.03 4.53 -2.39 -0.01 1.02 16 38 H 0.12 1.48 7.40 -2.39 -0.02 1.46 16 39 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.10 0.58 8.07 -2.39 -0.02 0.57 16 41 H 0.05 0.90 7.42 -2.38 -0.02 0.89 16 42 H 0.07 0.33 6.95 -2.39 -0.02 0.31 16 43 H 0.09 0.22 8.07 -2.39 -0.02 0.20 16 44 H 0.09 0.41 6.01 -2.39 -0.01 0.39 16 45 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 46 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 47 H 0.06 1.64 8.10 -2.39 -0.02 1.62 16 48 H 0.08 1.74 8.10 -2.39 -0.02 1.72 16 Total: -1.00 -75.81 365.96 5.27 -70.54 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.75 Total: 15.86 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 5.53 Total: -14.66 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: -2.56 Total: -67.85 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -0.26 Total: -55.37 kcal Atomic # 14 Polarization: 49.68 SS G_CDS: 1.80 Total: 51.48 kcal Total: -75.81 5.27 -70.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850978807.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.192 kcal (2) G-P(sol) polarization free energy of solvation -75.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds