Wall clock time and date at job start Fri Apr 10 2020 22:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52998 * 109.47251 * 2 1 4 4 O 1.42973 * 109.47184 * 120.00375 * 2 1 3 5 5 C 1.43091 * 113.77210 * 61.20025 * 4 2 1 6 6 C 1.53259 * 108.93942 * 57.97441 * 5 4 2 7 7 C 1.53001 * 109.57591 * 185.54016 * 6 5 4 8 8 C 1.50703 * 109.57761 * 65.28291 * 6 5 4 9 9 O 1.21282 * 119.99591 * 2.03815 * 8 6 5 10 10 N 1.34775 * 120.00065 * 182.03142 * 8 6 5 11 11 C 1.46926 * 120.63025 * 354.71121 * 10 8 6 12 12 C 1.53194 * 108.77489 * 126.41265 * 11 10 8 13 13 C 1.53040 * 109.31516 * 54.63270 * 12 11 10 14 14 C 1.53045 * 109.53579 * 298.63461 * 13 12 11 15 15 H 1.08994 * 109.49762 * 301.38368 * 14 13 12 16 16 C 1.50700 * 109.49315 * 181.31529 * 14 13 12 17 17 H 1.08003 * 119.99942 * 239.99713 * 16 14 13 18 18 C 1.37876 * 119.99874 * 60.00641 * 16 14 13 19 19 N 1.31513 * 120.00413 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 119.99733 * 180.27454 * 18 16 14 21 21 H 1.48500 * 109.46867 * 179.72293 * 20 18 16 22 22 H 1.48501 * 109.46832 * 299.71926 * 20 18 16 23 23 H 1.48500 * 109.47320 * 59.71690 * 20 18 16 24 24 C 1.46925 * 120.63128 * 174.72868 * 10 8 6 25 25 C 1.53263 * 108.95285 * 305.40988 * 6 5 4 26 26 O 1.42973 * 109.47135 * 239.99565 * 2 1 3 27 27 H 1.08998 * 109.47413 * 300.00162 * 1 2 3 28 28 H 1.09007 * 109.47511 * 59.99781 * 1 2 3 29 29 H 1.09000 * 109.47267 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46957 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47330 * 299.99943 * 3 2 1 32 32 H 1.08996 * 109.47234 * 60.00358 * 3 2 1 33 33 H 1.08997 * 109.55752 * 298.13704 * 5 4 2 34 34 H 1.08995 * 109.55607 * 177.80926 * 5 4 2 35 35 H 1.09002 * 109.46683 * 309.89318 * 7 6 5 36 36 H 1.08999 * 109.47272 * 69.88750 * 7 6 5 37 37 H 1.08996 * 109.47210 * 189.89009 * 7 6 5 38 38 H 1.08995 * 109.58625 * 6.62120 * 11 10 8 39 39 H 1.09002 * 109.70109 * 246.26843 * 11 10 8 40 40 H 1.08999 * 109.49562 * 294.68200 * 12 11 10 41 41 H 1.09000 * 109.52141 * 174.60499 * 12 11 10 42 42 H 1.09000 * 109.45836 * 178.61616 * 13 12 11 43 43 H 1.09000 * 109.44894 * 58.64597 * 13 12 11 44 44 H 0.97001 * 120.00229 * 180.02562 * 19 18 16 45 45 H 1.08996 * 109.58914 * 113.79719 * 24 10 8 46 46 H 1.09009 * 109.58361 * 353.37951 * 24 10 8 47 47 H 1.08998 * 109.56190 * 174.42608 * 25 6 5 48 48 H 1.09000 * 109.56116 * 294.74981 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0065 -0.6741 1.1673 5 6 1.6040 -2.0449 1.2465 6 6 2.1042 -2.7830 0.0000 7 6 1.5655 -4.2151 0.0016 8 6 3.6110 -2.8103 0.0000 9 8 4.2263 -2.3238 0.9250 10 7 4.2747 -3.3756 -1.0278 11 6 3.5460 -4.0706 -2.0977 12 6 3.9720 -3.4828 -3.4468 13 6 5.4954 -3.5570 -3.5729 14 6 6.1420 -2.7295 -2.4597 15 1 5.8021 -1.6963 -2.5302 16 6 7.6413 -2.7768 -2.6040 17 1 8.2483 -3.1769 -1.8053 18 6 8.2381 -2.3092 -3.7556 19 7 7.4990 -1.8223 -4.7283 20 14 10.0962 -2.3750 -3.9376 21 1 10.4838 -1.8218 -5.2600 22 1 10.7277 -1.5712 -2.8604 23 1 10.5539 -3.7841 -3.8368 24 6 5.7407 -3.3088 -1.0995 25 6 1.6040 -2.0477 -1.2482 26 8 2.0065 -0.6741 -1.1673 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.5166 -2.1038 1.2937 34 1 2.0348 -2.5007 2.1380 35 1 1.7643 -4.6769 0.9687 36 1 0.4908 -4.1992 -0.1794 37 1 2.0577 -4.7893 -0.7833 38 1 2.4739 -3.9306 -1.9603 39 1 3.7819 -5.1345 -2.0719 40 1 3.6522 -2.4426 -3.5076 41 1 3.5119 -4.0527 -4.2540 42 1 5.7991 -3.1619 -4.5423 43 1 5.8166 -4.5951 -3.4870 44 1 7.9189 -1.4937 -5.5386 45 1 6.1578 -4.3099 -0.9912 46 1 6.1165 -2.6661 -0.3033 47 1 2.0347 -2.5055 -2.1386 48 1 0.5166 -2.1067 -1.2953 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855254540.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:30 Heat of formation + Delta-G solvation = -115.327568 kcal Electronic energy + Delta-G solvation = -28993.604656 eV Core-core repulsion = 25242.142568 eV Total energy + Delta-G solvation = -3751.462088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.17970 -39.06545 -36.75593 -35.58935 -35.01940 -33.25672 -31.59523 -31.19981 -30.08370 -27.90763 -26.25536 -26.25304 -25.03579 -24.94063 -22.26548 -21.70446 -20.96689 -19.26220 -18.08809 -17.68133 -16.56259 -16.39334 -16.16596 -15.75496 -15.12309 -14.85492 -14.68975 -14.48699 -13.92390 -13.58976 -13.47734 -13.23706 -13.01274 -12.77204 -12.72133 -12.53109 -12.30142 -12.22235 -12.18217 -12.06560 -11.87536 -11.76360 -11.72611 -11.03943 -10.96293 -10.87936 -10.76084 -10.68286 -10.25590 -9.94589 -9.85772 -9.67835 -9.64718 -9.39782 -9.03827 -8.76053 -8.34155 -7.82218 -5.97921 -4.04965 3.07569 3.33900 3.38070 3.40854 3.52491 3.61232 3.78046 4.36928 4.45058 4.48092 4.62185 4.76911 4.87346 4.94403 5.13319 5.20000 5.24712 5.31789 5.34137 5.42542 5.49863 5.52681 5.60964 5.62767 5.65913 5.71890 5.73785 5.80300 5.90022 5.99849 6.14365 6.19809 6.34691 6.43652 6.51663 6.70360 6.86029 6.93412 7.02967 7.20551 7.29225 7.37093 7.72798 7.97738 8.08029 8.11472 8.41948 8.74193 8.98599 9.59565 11.07500 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.004381 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.534170 B = 6388.989582 C = 6774.413451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.260 3.740 3 C -0.128 4.128 4 O -0.367 6.367 5 C 0.086 3.914 6 C -0.154 4.154 7 C -0.156 4.156 8 C 0.531 3.469 9 O -0.534 6.534 10 N -0.600 5.600 11 C 0.091 3.909 12 C -0.139 4.139 13 C -0.110 4.110 14 C 0.041 3.959 15 H 0.031 0.969 16 C -0.514 4.514 17 H 0.056 0.944 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.288 1.288 22 H -0.277 1.277 23 H -0.277 1.277 24 C 0.120 3.880 25 C 0.055 3.945 26 O -0.373 6.373 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.095 0.905 43 H 0.034 0.966 44 H 0.260 0.740 45 H 0.052 0.948 46 H 0.077 0.923 47 H 0.118 0.882 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.105 -2.018 6.164 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.183 3.817 3 C -0.185 4.185 4 O -0.286 6.286 5 C 0.009 3.991 6 C -0.158 4.158 7 C -0.213 4.213 8 C 0.317 3.683 9 O -0.410 6.410 10 N -0.332 5.332 11 C -0.032 4.032 12 C -0.177 4.177 13 C -0.148 4.148 14 C 0.022 3.978 15 H 0.049 0.951 16 C -0.553 4.553 17 H 0.074 0.926 18 C -0.137 4.137 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.213 1.213 22 H -0.202 1.202 23 H -0.203 1.203 24 C -0.001 4.001 25 C -0.022 4.022 26 O -0.293 6.293 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.114 0.886 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.136 0.864 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.511 -1.483 6.480 18.730 hybrid contribution 0.627 -0.439 -0.321 0.830 sum -16.884 -1.921 6.159 18.075 Atomic orbital electron populations 1.22851 0.96537 1.03006 1.03817 1.22805 0.90680 0.91580 0.76603 1.21579 1.03636 0.90575 1.02699 1.88257 1.75803 1.22643 1.41942 1.22454 0.97702 0.81999 0.96980 1.22098 0.95583 0.98614 0.99543 1.22130 1.01476 0.93485 1.04219 1.19776 0.88151 0.77982 0.82351 1.90668 1.69004 1.46085 1.35254 1.48141 1.08599 1.54381 1.22113 1.22251 0.96038 0.96271 0.88639 1.22076 1.00710 1.00563 0.94354 1.21605 0.89725 0.98972 1.04513 1.18957 0.95207 0.95410 0.88236 0.95115 1.21043 0.91163 1.41176 1.01871 0.92609 1.24922 0.97999 0.94952 0.95847 1.69864 1.34871 1.41486 1.06533 0.86655 0.85799 0.78331 0.77196 1.21325 1.20240 1.20297 1.21966 0.75982 1.00523 1.01594 1.23242 0.98977 0.82278 0.97657 1.88309 1.75872 1.22623 1.42476 0.90615 0.90549 0.91920 0.90528 0.90422 0.90522 0.92490 0.87922 0.91331 0.91393 0.89838 0.89766 0.91864 0.92010 0.92525 0.88628 0.94692 0.92963 0.92927 0.90462 0.86444 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.08 8.11 37.15 0.30 -1.78 16 2 C 0.26 3.69 1.50 -26.74 -0.04 3.65 16 3 C -0.13 -1.65 9.21 37.16 0.34 -1.31 16 4 O -0.37 -5.96 9.64 -64.45 -0.62 -6.59 16 5 C 0.09 1.16 4.81 37.29 0.18 1.34 16 6 C -0.15 -2.14 0.51 -155.39 -0.08 -2.22 16 7 C -0.16 -1.57 8.11 37.16 0.30 -1.27 16 8 C 0.53 10.08 6.12 -10.98 -0.07 10.01 16 9 O -0.53 -12.22 14.90 -7.66 -0.11 -12.34 16 10 N -0.60 -11.42 2.97 -172.77 -0.51 -11.93 16 11 C 0.09 1.39 3.99 -3.71 -0.01 1.38 16 12 C -0.14 -2.46 5.75 -26.61 -0.15 -2.62 16 13 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 14 C 0.04 1.03 2.25 -91.65 -0.21 0.83 16 15 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 16 C -0.51 -14.17 8.56 -34.44 -0.29 -14.47 16 17 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 18 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 19 N -0.89 -25.25 11.31 55.43 0.63 -24.63 16 20 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.12 2.70 5.64 -3.71 -0.02 2.68 16 25 C 0.05 0.74 4.92 37.29 0.18 0.92 16 26 O -0.37 -6.13 10.11 -59.03 -0.60 -6.73 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 29 H 0.06 0.58 5.12 -51.93 -0.27 0.31 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.59 6.53 -51.93 -0.34 0.25 16 34 H 0.10 1.43 7.92 -51.93 -0.41 1.02 16 35 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 36 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 37 H 0.08 0.84 4.73 -51.93 -0.25 0.59 16 38 H 0.08 1.04 2.75 -51.93 -0.14 0.90 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 1.18 7.54 -51.93 -0.39 0.79 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.10 2.45 6.04 -51.93 -0.31 2.14 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.08 1.89 7.04 -51.92 -0.37 1.53 16 47 H 0.12 1.61 4.00 -51.93 -0.21 1.40 16 48 H 0.06 0.63 6.51 -51.93 -0.34 0.29 16 LS Contribution 351.37 15.07 5.30 5.30 Total: -1.00 -32.82 351.37 -8.37 -41.19 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -7.63 Total: 3.15 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 0.20 Total: -3.79 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.11 Total: -36.56 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -1.33 Total: -25.65 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.82 -8.37 -41.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254540.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.134 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds