Wall clock time and date at job start Fri Apr 10 2020 22:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52998 * 109.47251 * 2 1 4 4 O 1.42973 * 109.47184 * 120.00375 * 2 1 3 5 5 C 1.43091 * 113.77210 * 61.20025 * 4 2 1 6 6 C 1.53259 * 108.93942 * 57.97441 * 5 4 2 7 7 C 1.53001 * 109.57591 * 185.54016 * 6 5 4 8 8 C 1.50703 * 109.57761 * 65.28291 * 6 5 4 9 9 O 1.21282 * 119.99591 * 2.03815 * 8 6 5 10 10 N 1.34775 * 120.00065 * 182.03142 * 8 6 5 11 11 C 1.46926 * 120.63025 * 354.71121 * 10 8 6 12 12 C 1.53194 * 108.77489 * 126.41265 * 11 10 8 13 13 C 1.53040 * 109.31516 * 54.63270 * 12 11 10 14 14 C 1.53045 * 109.53579 * 298.63461 * 13 12 11 15 15 H 1.08994 * 109.49762 * 301.38368 * 14 13 12 16 16 C 1.50700 * 109.49315 * 181.31529 * 14 13 12 17 17 H 1.08003 * 119.99942 * 239.99713 * 16 14 13 18 18 C 1.37876 * 119.99874 * 60.00641 * 16 14 13 19 19 N 1.31513 * 120.00413 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 119.99733 * 180.27454 * 18 16 14 21 21 H 1.48500 * 109.46867 * 179.72293 * 20 18 16 22 22 H 1.48501 * 109.46832 * 299.71926 * 20 18 16 23 23 H 1.48500 * 109.47320 * 59.71690 * 20 18 16 24 24 C 1.46925 * 120.63128 * 174.72868 * 10 8 6 25 25 C 1.53263 * 108.95285 * 305.40988 * 6 5 4 26 26 O 1.42973 * 109.47135 * 239.99565 * 2 1 3 27 27 H 1.08998 * 109.47413 * 300.00162 * 1 2 3 28 28 H 1.09007 * 109.47511 * 59.99781 * 1 2 3 29 29 H 1.09000 * 109.47267 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46957 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47330 * 299.99943 * 3 2 1 32 32 H 1.08996 * 109.47234 * 60.00358 * 3 2 1 33 33 H 1.08997 * 109.55752 * 298.13704 * 5 4 2 34 34 H 1.08995 * 109.55607 * 177.80926 * 5 4 2 35 35 H 1.09002 * 109.46683 * 309.89318 * 7 6 5 36 36 H 1.08999 * 109.47272 * 69.88750 * 7 6 5 37 37 H 1.08996 * 109.47210 * 189.89009 * 7 6 5 38 38 H 1.08995 * 109.58625 * 6.62120 * 11 10 8 39 39 H 1.09002 * 109.70109 * 246.26843 * 11 10 8 40 40 H 1.08999 * 109.49562 * 294.68200 * 12 11 10 41 41 H 1.09000 * 109.52141 * 174.60499 * 12 11 10 42 42 H 1.09000 * 109.45836 * 178.61616 * 13 12 11 43 43 H 1.09000 * 109.44894 * 58.64597 * 13 12 11 44 44 H 0.97001 * 120.00229 * 180.02562 * 19 18 16 45 45 H 1.08996 * 109.58914 * 113.79719 * 24 10 8 46 46 H 1.09009 * 109.58361 * 353.37951 * 24 10 8 47 47 H 1.08998 * 109.56190 * 174.42608 * 25 6 5 48 48 H 1.09000 * 109.56116 * 294.74981 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0065 -0.6741 1.1673 5 6 1.6040 -2.0449 1.2465 6 6 2.1042 -2.7830 0.0000 7 6 1.5655 -4.2151 0.0016 8 6 3.6110 -2.8103 0.0000 9 8 4.2263 -2.3238 0.9250 10 7 4.2747 -3.3756 -1.0278 11 6 3.5460 -4.0706 -2.0977 12 6 3.9720 -3.4828 -3.4468 13 6 5.4954 -3.5570 -3.5729 14 6 6.1420 -2.7295 -2.4597 15 1 5.8021 -1.6963 -2.5302 16 6 7.6413 -2.7768 -2.6040 17 1 8.2483 -3.1769 -1.8053 18 6 8.2381 -2.3092 -3.7556 19 7 7.4990 -1.8223 -4.7283 20 14 10.0962 -2.3750 -3.9376 21 1 10.4838 -1.8218 -5.2600 22 1 10.7277 -1.5712 -2.8604 23 1 10.5539 -3.7841 -3.8368 24 6 5.7407 -3.3088 -1.0995 25 6 1.6040 -2.0477 -1.2482 26 8 2.0065 -0.6741 -1.1673 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.5166 -2.1038 1.2937 34 1 2.0348 -2.5007 2.1380 35 1 1.7643 -4.6769 0.9687 36 1 0.4908 -4.1992 -0.1794 37 1 2.0577 -4.7893 -0.7833 38 1 2.4739 -3.9306 -1.9603 39 1 3.7819 -5.1345 -2.0719 40 1 3.6522 -2.4426 -3.5076 41 1 3.5119 -4.0527 -4.2540 42 1 5.7991 -3.1619 -4.5423 43 1 5.8166 -4.5951 -3.4870 44 1 7.9189 -1.4937 -5.5386 45 1 6.1578 -4.3099 -0.9912 46 1 6.1165 -2.6661 -0.3033 47 1 2.0347 -2.5055 -2.1386 48 1 0.5166 -2.1067 -1.2953 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855254540.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:29 Heat of formation + Delta-G solvation = -137.100672 kcal Electronic energy + Delta-G solvation = -28994.548809 eV Core-core repulsion = 25242.142568 eV Total energy + Delta-G solvation = -3752.406241 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.37263 -40.41061 -38.38767 -36.75781 -36.24502 -35.07084 -33.03959 -32.51040 -31.82093 -28.77538 -27.51834 -27.19787 -26.81090 -26.44359 -23.53230 -23.37902 -22.23115 -20.83970 -19.54279 -18.76471 -18.42392 -17.61599 -17.52239 -16.95423 -16.65866 -16.37914 -16.02264 -15.68820 -15.49325 -14.95152 -14.84741 -14.60627 -14.50127 -14.30145 -13.84224 -13.70362 -13.62474 -13.25575 -13.21771 -13.16032 -13.04052 -12.98315 -12.85105 -12.76811 -12.61734 -12.53647 -12.06398 -11.98934 -11.85955 -11.78185 -11.53393 -11.28835 -10.88781 -10.86474 -10.75529 -10.45842 -10.25193 -9.47136 -8.11578 -6.27538 1.39263 1.41403 1.48757 1.65923 2.09882 2.42356 2.61338 2.75281 3.14314 3.26518 3.43329 3.72380 3.77488 3.90094 3.96681 4.03730 4.18724 4.25894 4.26933 4.36144 4.45740 4.54477 4.57896 4.61805 4.65215 4.71580 4.73794 4.74961 4.76785 4.82195 4.86265 4.86548 4.92781 5.10936 5.12147 5.16255 5.23545 5.28947 5.46828 5.55895 5.59264 5.92383 5.95475 6.12799 6.28836 6.33039 6.58472 6.81559 7.26142 7.40494 8.91914 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.004381 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.534170 B = 6388.989582 C = 6774.413451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.246 3.754 3 C -0.131 4.131 4 O -0.402 6.402 5 C 0.080 3.920 6 C -0.146 4.146 7 C -0.153 4.153 8 C 0.519 3.481 9 O -0.586 6.586 10 N -0.605 5.605 11 C 0.091 3.909 12 C -0.130 4.130 13 C -0.103 4.103 14 C 0.045 3.955 15 H -0.021 1.021 16 C -0.541 4.541 17 H 0.050 0.950 18 C 0.018 3.982 19 N -0.912 5.912 20 Si 0.956 3.044 21 H -0.280 1.280 22 H -0.278 1.278 23 H -0.266 1.266 24 C 0.133 3.867 25 C 0.048 3.952 26 O -0.411 6.411 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.036 0.964 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.127 0.873 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.095 0.905 42 H 0.062 0.938 43 H 0.039 0.961 44 H 0.262 0.738 45 H 0.061 0.939 46 H 0.042 0.958 47 H 0.112 0.888 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.329 -3.806 5.814 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.170 3.830 3 C -0.188 4.188 4 O -0.323 6.323 5 C 0.003 3.997 6 C -0.150 4.150 7 C -0.210 4.210 8 C 0.308 3.692 9 O -0.467 6.467 10 N -0.336 5.336 11 C -0.030 4.030 12 C -0.168 4.168 13 C -0.141 4.141 14 C 0.026 3.974 15 H -0.003 1.003 16 C -0.580 4.580 17 H 0.068 0.932 18 C -0.181 4.181 19 N -0.551 5.551 20 Si 0.781 3.219 21 H -0.205 1.205 22 H -0.204 1.204 23 H -0.191 1.191 24 C 0.010 3.990 25 C -0.027 4.027 26 O -0.332 6.332 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.129 0.871 37 H 0.104 0.896 38 H 0.144 0.856 39 H 0.105 0.895 40 H 0.061 0.939 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.129 0.871 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -20.767 -3.295 6.114 21.898 hybrid contribution 1.682 0.194 -0.192 1.704 sum -19.085 -3.101 5.923 20.222 Atomic orbital electron populations 1.22751 0.92663 1.04499 1.05091 1.23190 0.93357 0.91020 0.75393 1.21666 1.01116 0.91504 1.04496 1.88213 1.77050 1.24127 1.42874 1.22665 1.00051 0.80749 0.96217 1.22165 0.90924 1.01601 1.00311 1.22192 1.03949 0.90189 1.04633 1.20915 0.90770 0.76335 0.81183 1.90635 1.70757 1.47983 1.37283 1.48220 1.07125 1.54831 1.23430 1.22570 0.97951 0.96777 0.85715 1.21977 0.96953 1.00495 0.97420 1.21388 0.93376 0.98021 1.01322 1.18827 0.94450 0.93208 0.90962 1.00291 1.21406 0.92735 1.41808 1.02041 0.93181 1.25689 1.02510 0.94444 0.95438 1.70007 1.36565 1.41732 1.06818 0.85656 0.80308 0.78771 0.77182 1.20524 1.20357 1.19089 1.21490 0.79073 0.99737 0.98680 1.23471 1.01538 0.80915 0.96798 1.88264 1.77155 1.24270 1.43492 0.89263 0.89365 0.90224 0.94479 0.88845 0.88493 0.88076 0.89268 0.91048 0.87099 0.89606 0.85588 0.89468 0.93913 0.88685 0.91914 0.94233 0.92877 0.92088 0.93929 0.87073 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.19 8.11 71.98 0.58 -2.60 16 2 C 0.25 6.73 1.50 30.59 0.05 6.78 16 3 C -0.13 -3.45 9.21 71.98 0.66 -2.79 16 4 O -0.40 -12.95 9.64 -121.04 -1.17 -14.12 16 5 C 0.08 1.99 4.81 72.07 0.35 2.33 16 6 C -0.15 -3.71 0.51 -52.75 -0.03 -3.73 16 7 C -0.15 -2.35 8.11 71.98 0.58 -1.76 16 8 C 0.52 19.91 6.12 87.66 0.54 20.45 16 9 O -0.59 -28.36 14.90 9.60 0.14 -28.21 16 10 N -0.60 -23.19 2.97 -818.90 -2.43 -25.62 16 11 C 0.09 2.58 3.99 86.36 0.34 2.92 16 12 C -0.13 -4.48 5.75 30.67 0.18 -4.30 16 13 C -0.10 -4.75 4.96 30.62 0.15 -4.60 16 14 C 0.04 2.38 2.25 -11.46 -0.03 2.36 16 15 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 16 C -0.54 -31.30 8.56 25.60 0.22 -31.08 16 17 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 18 C 0.02 1.05 5.30 84.65 0.45 1.50 16 19 N -0.91 -53.66 11.31 21.45 0.24 -53.42 16 20 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 C 0.13 6.28 5.64 86.36 0.49 6.77 16 25 C 0.05 1.15 4.92 72.07 0.35 1.51 16 26 O -0.41 -13.24 10.11 -126.22 -1.28 -14.51 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.08 1.03 5.12 -2.39 -0.01 1.01 16 30 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 2.07 8.14 -2.39 -0.02 2.06 16 32 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.10 1.60 6.53 -2.39 -0.02 1.59 16 34 H 0.09 2.42 7.92 -2.39 -0.02 2.40 16 35 H 0.07 1.11 8.12 -2.39 -0.02 1.09 16 36 H 0.11 0.83 8.09 -2.39 -0.02 0.81 16 37 H 0.09 1.29 4.73 -2.39 -0.01 1.28 16 38 H 0.13 2.58 2.75 -2.39 -0.01 2.58 16 39 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.04 1.63 7.54 -2.39 -0.02 1.61 16 41 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.06 3.32 6.04 -2.39 -0.01 3.30 16 43 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 46 H 0.04 2.26 7.04 -2.38 -0.02 2.25 16 47 H 0.11 2.72 4.00 -2.39 -0.01 2.71 16 48 H 0.11 1.58 6.51 -2.39 -0.02 1.57 16 Total: -1.00 -79.79 351.37 3.39 -76.40 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.96 Total: 18.89 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 4.89 Total: -6.25 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -2.19 Total: -79.04 kcal Atomic # 8 Polarization: -54.55 SS G_CDS: -2.30 Total: -56.85 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -79.79 3.39 -76.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254540.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.696 kcal (2) G-P(sol) polarization free energy of solvation -79.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds