Wall clock time and date at job start Fri Apr 10 2020 22:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.46926 * 2 1 4 4 O 1.42962 * 109.47559 * 120.00218 * 2 1 3 5 5 C 1.43100 * 113.76742 * 61.20611 * 4 2 1 6 6 C 1.53263 * 108.94344 * 57.97073 * 5 4 2 7 7 C 1.53001 * 109.57311 * 65.28100 * 6 5 4 8 8 C 1.50694 * 109.57406 * 185.53819 * 6 5 4 9 9 O 1.21277 * 120.00255 * 358.50798 * 8 6 5 10 10 N 1.34780 * 119.99609 * 178.50772 * 8 6 5 11 11 C 1.46927 * 120.63403 * 5.34853 * 10 8 6 12 12 C 1.53188 * 108.77363 * 233.58230 * 11 10 8 13 13 C 1.53040 * 109.31430 * 305.35856 * 12 11 10 14 14 C 1.53047 * 109.53178 * 61.36811 * 13 12 11 15 15 H 1.08998 * 109.49618 * 58.58672 * 14 13 12 16 16 C 1.50700 * 109.49238 * 178.64917 * 14 13 12 17 17 H 1.08001 * 120.00170 * 120.00517 * 16 14 13 18 18 C 1.37879 * 120.00118 * 299.99532 * 16 14 13 19 19 N 1.31517 * 119.99900 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00086 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46890 * 60.00074 * 20 18 16 22 22 H 1.48493 * 109.47200 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47283 * 300.00564 * 20 18 16 24 24 C 1.46932 * 120.62919 * 185.06128 * 10 8 6 25 25 C 1.53262 * 108.94924 * 305.41431 * 6 5 4 26 26 O 1.42968 * 109.47197 * 240.00541 * 2 1 3 27 27 H 1.08995 * 109.47132 * 299.99424 * 1 2 3 28 28 H 1.09008 * 109.47478 * 59.99879 * 1 2 3 29 29 H 1.09002 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46791 * 180.02562 * 3 2 1 31 31 H 1.08992 * 109.47480 * 300.00110 * 3 2 1 32 32 H 1.09004 * 109.46886 * 60.00530 * 3 2 1 33 33 H 1.08993 * 109.55430 * 298.13418 * 5 4 2 34 34 H 1.09001 * 109.55809 * 177.80575 * 5 4 2 35 35 H 1.08999 * 109.47295 * 168.62435 * 7 6 5 36 36 H 1.09001 * 109.47545 * 288.62731 * 7 6 5 37 37 H 1.09004 * 109.47006 * 48.62989 * 7 6 5 38 38 H 1.09002 * 109.58345 * 353.37332 * 11 10 8 39 39 H 1.08997 * 109.58889 * 113.64913 * 11 10 8 40 40 H 1.09000 * 109.49888 * 65.31687 * 12 11 10 41 41 H 1.09005 * 109.49593 * 185.40696 * 12 11 10 42 42 H 1.08996 * 109.45644 * 181.38248 * 13 12 11 43 43 H 1.08994 * 109.46004 * 301.35073 * 13 12 11 44 44 H 0.97000 * 119.99737 * 179.97438 * 19 18 16 45 45 H 1.08997 * 109.58901 * 246.20753 * 24 10 8 46 46 H 1.08994 * 109.58439 * 6.63251 * 24 10 8 47 47 H 1.09004 * 109.55355 * 174.42311 * 25 6 5 48 48 H 1.08998 * 109.55962 * 294.75011 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0066 -0.6740 1.1672 5 6 1.6041 -2.0449 1.2463 6 6 2.1043 -2.7830 -0.0003 7 6 3.6341 -2.8106 -0.0003 8 6 1.5738 -4.1935 0.0013 9 8 0.8874 -4.5822 0.9225 10 7 1.8623 -5.0230 -1.0211 11 6 2.7863 -4.6069 -2.0849 12 6 2.0940 -4.7907 -3.4390 13 6 1.6012 -6.2342 -3.5638 14 6 0.5840 -6.5250 -2.4578 15 1 -0.2496 -5.8273 -2.5376 16 6 0.0745 -7.9360 -2.6014 17 1 0.2151 -8.6452 -1.7991 18 6 -0.5712 -8.3215 -3.7570 19 7 -0.7421 -7.4580 -4.7342 20 14 -1.2033 -10.0703 -3.9348 21 1 -2.1903 -10.3513 -2.8614 22 1 -1.8538 -10.2292 -5.2601 23 1 -0.0677 -11.0208 -3.8241 24 6 1.2635 -6.3630 -1.0896 25 6 1.6040 -2.0475 -1.2483 26 8 2.0065 -0.6738 -1.1674 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 0.5168 -2.1038 1.2935 34 1 2.0350 -2.5008 2.1377 35 1 3.9850 -3.5005 -0.7677 36 1 4.0156 -1.8110 -0.2086 37 1 3.9916 -3.1400 0.9753 38 1 3.0513 -3.5584 -1.9492 39 1 3.6872 -5.2193 -2.0466 40 1 1.2462 -4.1093 -3.5096 41 1 2.8008 -4.5770 -4.2409 42 1 1.1298 -6.3741 -4.5365 43 1 2.4462 -6.9160 -3.4683 44 1 -1.1960 -7.7294 -5.5473 45 1 2.0416 -7.1174 -0.9734 46 1 0.5234 -6.4735 -0.2972 47 1 2.0348 -2.5054 -2.1388 48 1 0.5167 -2.1066 -1.2954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855254541.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:37:32 Heat of formation + Delta-G solvation = -119.964743 kcal Electronic energy + Delta-G solvation = -28539.340888 eV Core-core repulsion = 24787.677717 eV Total energy + Delta-G solvation = -3751.663171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.28055 -39.38386 -36.94538 -35.77356 -34.95945 -33.36875 -31.58477 -31.27715 -30.07204 -28.21662 -26.57126 -26.28498 -25.05822 -25.03588 -22.46942 -21.79550 -20.68146 -19.21872 -18.28442 -17.79986 -16.94583 -16.43295 -16.26673 -15.76774 -15.52447 -15.05609 -14.70072 -14.40530 -14.04585 -13.65607 -13.57513 -13.37645 -12.92385 -12.89571 -12.78628 -12.65989 -12.47760 -12.36285 -12.25590 -12.07973 -12.02066 -11.78623 -11.72530 -11.24326 -11.05261 -10.96366 -10.84590 -10.75603 -10.32435 -10.06080 -9.95578 -9.78736 -9.61902 -9.54808 -9.26098 -8.88181 -8.43325 -7.99403 -6.06596 -4.13977 2.84851 3.28238 3.28874 3.33093 3.37151 3.44079 3.60332 4.38597 4.39291 4.51093 4.61815 4.65493 4.70304 4.88737 5.14537 5.23618 5.25920 5.35272 5.39738 5.41947 5.44172 5.50095 5.52800 5.59306 5.63583 5.65246 5.81244 5.88097 5.94943 5.96940 6.02916 6.14053 6.25554 6.30839 6.40112 6.58301 6.68703 6.74274 6.86577 7.08924 7.09109 7.26220 7.63380 7.82802 7.90991 8.01521 8.31000 8.49044 8.89124 9.51211 10.98764 Molecular weight = 311.19amu Principal moments of inertia in cm(-1) A = 0.025014 B = 0.003632 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.103234 B = 7708.054259 C = 7834.423638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.261 3.739 3 C -0.126 4.126 4 O -0.382 6.382 5 C 0.083 3.917 6 C -0.148 4.148 7 C -0.147 4.147 8 C 0.523 3.477 9 O -0.548 6.548 10 N -0.596 5.596 11 C 0.084 3.916 12 C -0.138 4.138 13 C -0.112 4.112 14 C 0.042 3.958 15 H 0.029 0.971 16 C -0.516 4.516 17 H 0.057 0.943 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.116 3.884 25 C 0.058 3.942 26 O -0.378 6.378 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.036 0.964 44 H 0.261 0.739 45 H 0.056 0.944 46 H 0.079 0.921 47 H 0.120 0.880 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.553 15.346 5.932 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C 0.185 3.815 3 C -0.183 4.183 4 O -0.302 6.302 5 C 0.007 3.993 6 C -0.152 4.152 7 C -0.204 4.204 8 C 0.309 3.691 9 O -0.426 6.426 10 N -0.327 5.327 11 C -0.038 4.038 12 C -0.176 4.176 13 C -0.150 4.150 14 C 0.023 3.977 15 H 0.047 0.953 16 C -0.555 4.555 17 H 0.075 0.925 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.004 4.004 25 C -0.019 4.019 26 O -0.299 6.299 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.115 0.885 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.097 0.903 47 H 0.137 0.863 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.328 15.327 6.228 18.095 hybrid contribution -0.712 -1.397 -0.275 1.592 sum 6.616 13.931 5.953 16.531 Atomic orbital electron populations 1.22860 0.96132 1.03772 1.03887 1.22776 0.91312 0.91129 0.76322 1.21586 1.02839 0.90709 1.03130 1.88129 1.76143 1.23405 1.42562 1.22471 0.99903 0.80331 0.96619 1.21946 0.99465 0.94465 0.99321 1.22083 0.91251 1.03878 1.03210 1.20005 0.80509 0.86227 0.82326 1.90665 1.39726 1.77010 1.35234 1.48251 1.45142 1.16833 1.22504 1.22419 0.92526 1.00499 0.88379 1.22067 0.99613 1.01432 0.94471 1.21633 0.98152 0.90711 1.04533 1.19042 0.93440 0.97137 0.88112 0.95300 1.21031 1.36874 0.95980 1.01591 0.92521 1.24928 0.95628 0.97368 0.95800 1.69855 1.42405 1.34269 1.06194 0.86633 0.79171 0.84837 0.77228 1.20221 1.21287 1.20241 1.22140 0.97045 0.79619 1.01644 1.23151 1.00071 0.81248 0.97384 1.88189 1.75933 1.23092 1.42669 0.90496 0.90432 0.91440 0.90953 0.90308 0.90372 0.91602 0.87705 0.90517 0.90539 0.91967 0.88936 0.91536 0.92324 0.92199 0.88528 0.94496 0.92878 0.92532 0.90304 0.86276 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.22 8.11 37.15 0.30 -1.92 16 2 C 0.26 3.04 1.50 -26.73 -0.04 3.00 16 3 C -0.13 -1.11 9.21 37.16 0.34 -0.77 16 4 O -0.38 -4.98 10.09 -59.03 -0.60 -5.57 16 5 C 0.08 1.15 4.60 37.29 0.17 1.32 16 6 C -0.15 -2.08 0.50 -155.39 -0.08 -2.16 16 7 C -0.15 -1.79 7.87 37.16 0.29 -1.50 16 8 C 0.52 9.21 6.49 -10.99 -0.07 9.14 16 9 O -0.55 -11.40 15.38 5.56 0.09 -11.32 16 10 N -0.60 -10.62 2.96 -172.51 -0.51 -11.14 16 11 C 0.08 1.25 4.05 -3.71 -0.02 1.24 16 12 C -0.14 -2.32 5.78 -26.61 -0.15 -2.48 16 13 C -0.11 -2.43 4.96 -26.69 -0.13 -2.56 16 14 C 0.04 1.00 2.26 -91.43 -0.21 0.79 16 15 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 16 C -0.52 -13.71 8.57 -34.44 -0.29 -14.00 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -24.45 11.31 55.43 0.63 -23.82 16 20 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.12 2.45 5.67 -3.49 -0.02 2.43 16 25 C 0.06 0.78 4.96 37.29 0.19 0.96 16 26 O -0.38 -4.90 9.71 -59.03 -0.57 -5.47 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 29 H 0.07 0.81 5.12 -51.93 -0.27 0.55 16 30 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.95 6.36 -51.93 -0.33 0.62 16 34 H 0.10 1.42 8.10 -51.93 -0.42 1.00 16 35 H 0.08 0.88 4.68 -51.93 -0.24 0.64 16 36 H 0.08 0.90 7.50 -51.93 -0.39 0.51 16 37 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16 38 H 0.09 1.17 2.57 -51.93 -0.13 1.04 16 39 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 40 H 0.06 1.03 7.83 -51.93 -0.41 0.62 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.10 2.39 6.04 -51.93 -0.31 2.07 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.08 1.79 7.04 -51.93 -0.37 1.42 16 47 H 0.12 1.56 4.45 -51.93 -0.23 1.33 16 48 H 0.06 0.90 6.54 -51.93 -0.34 0.56 16 LS Contribution 351.91 15.07 5.30 5.30 Total: -1.00 -29.31 351.91 -8.13 -37.44 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.63 Total: 3.65 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 0.19 Total: -4.87 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.12 Total: -34.96 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -1.08 Total: -22.36 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.31 -8.13 -37.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254541.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.528 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds